Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: PG511

Calculation Name: 2OA2-A-Xray23

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2OA2

Chain ID: A

ChEMBL ID:

UniProt ID: Q9K9C9

Base Structure: X-ray

Registration Date: 2018-06-07

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 237
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1501771.694586
FMO2-HF: Nuclear repulsion 1441186.216117
FMO2-HF: Total energy -60585.478468
FMO2-MP2: Total energy -60761.292005


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:157:ACE)


Summations of interaction energy for fragment #1(A:157:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.8791.7041.041-0.307-1.559-0.01
Interaction energy analysis for fragmet #1(A:157:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.008 / q_NPA : 0.000
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A159THR00.0270.0613.8890.9711.704-0.009-0.313-0.4120.000
4A160ASP-1-0.677-0.8196.731-0.646-0.6460.0000.0000.0000.000
5A161HIS10.8470.9196.5051.2531.2530.0000.0000.0000.000
6A162GLY00.0220.04611.5260.0690.0690.0000.0000.0000.000
7A163PRO00.0150.01215.0710.0130.0130.0000.0000.0000.000
8A164ARG10.9460.97814.2420.2620.2620.0000.0000.0000.000
9A165PRO00.0670.03016.417-0.032-0.0320.0000.0000.0000.000
10A166PHE00.000-0.0028.853-0.008-0.0080.0000.0000.0000.000
11A167VAL00.0380.03113.8550.0240.0240.0000.0000.0000.000
12A168VAL00.0030.0028.570-0.073-0.0730.0000.0000.0000.000
13A169ASN0-0.0080.0009.8420.0880.0880.0000.0000.0000.000
14A170ILE00.0620.0199.815-0.140-0.1400.0000.0000.0000.000
15A171GLU-1-0.707-0.79111.640-0.268-0.2680.0000.0000.0000.000
16A172ASP-1-0.744-0.8497.902-0.378-0.3780.0000.0000.0000.000
17A173GLU-1-0.812-0.9094.645-3.010-3.039-0.001-0.0260.0570.000
18A174THR0-0.025-0.0127.6570.0030.0030.0000.0000.0000.000
19A175LYS10.8780.92810.7290.2540.2540.0000.0000.0000.000
20A176ARG10.7970.9242.7081.2071.7610.252-0.365-0.441-0.001
21A177ASN00.0090.0016.6510.1780.1780.0000.0000.0000.000
22A178ARG10.8670.9277.622-0.059-0.0590.0000.0000.0000.000
23A179ALA00.0200.0369.0250.0480.0480.0000.0000.0000.000
24A180PHE0-0.0100.00010.763-0.059-0.0590.0000.0000.0000.000
25A181ARG10.8620.91813.1870.1550.1550.0000.0000.0000.000
26A182ARG10.8680.9385.7870.5810.5810.0000.0000.0000.000
27A183ALA00.0010.01010.403-0.069-0.0690.0000.0000.0000.000
28A184LEU00.0010.0017.795-0.142-0.1420.0000.0000.0000.000
29A185TRP0-0.059-0.04110.298-0.020-0.0200.0000.0000.0000.000
30A186THR00.0100.00713.4100.0520.0520.0000.0000.0000.000
31A187GLY00.007-0.00216.5280.0090.0090.0000.0000.0000.000
32A188ASP-1-0.792-0.83819.536-0.141-0.1410.0000.0000.0000.000
33A189HIS00.0010.02822.7410.0100.0100.0000.0000.0000.000
34A190LEU00.0580.03218.5040.0070.0070.0000.0000.0000.000
35A191GLN0-0.016-0.02916.3010.0060.0060.0000.0000.0000.000
36A192VAL00.0070.01813.3350.0200.0200.0000.0000.0000.000
37A193THR0-0.028-0.00912.752-0.049-0.0490.0000.0000.0000.000
38A194LEU0-0.004-0.0037.706-0.001-0.0010.0000.0000.0000.000
39A195MET00.0340.04511.7950.0310.0310.0000.0000.0000.000
40A196SER00.0430.04412.0200.0090.0090.0000.0000.0000.000
41A197ILE0-0.0070.01413.9360.0260.0260.0000.0000.0000.000
42A198GLN0-0.019-0.00515.0130.0210.0210.0000.0000.0000.000
43A199VAL00.0120.00219.047-0.007-0.0070.0000.0000.0000.000
44A200GLY00.0110.02322.1960.0070.0070.0000.0000.0000.000
45A201GLU-1-0.809-0.89418.872-0.049-0.0490.0000.0000.0000.000
46A202ASP-1-0.770-0.85623.275-0.060-0.0600.0000.0000.0000.000
47A203ILE0-0.007-0.01319.9790.0000.0000.0000.0000.0000.000
48A204GLY0-0.0060.00122.1800.0020.0020.0000.0000.0000.000
49A205LEU0-0.057-0.01525.512-0.008-0.0080.0000.0000.0000.000
50A206GLU-1-0.863-0.91225.598-0.076-0.0760.0000.0000.0000.000
51A207ILE0-0.062-0.04728.1950.0010.0010.0000.0000.0000.000
52A208HIS00.0210.01124.2260.0020.0020.0000.0000.0000.000
53A209PRO00.0290.01728.958-0.002-0.0020.0000.0000.0000.000
54A210HIS00.0230.04629.5960.0010.0010.0000.0000.0000.000
55A211LEU00.0070.02424.257-0.004-0.0040.0000.0000.0000.000
56A212ASP-1-0.780-0.86227.236-0.101-0.1010.0000.0000.0000.000
57A213GLN00.0390.01321.047-0.033-0.0330.0000.0000.0000.000
58A214PHE0-0.0010.00220.1300.0160.0160.0000.0000.0000.000
59A215LEU0-0.010-0.00519.879-0.025-0.0250.0000.0000.0000.000
60A216ARG10.8800.96018.4450.2150.2150.0000.0000.0000.000
61A217VAL00.0180.01217.989-0.033-0.0330.0000.0000.0000.000
62A218GLU-1-0.846-0.92914.649-0.259-0.2590.0000.0000.0000.000
63A219GLU-1-0.896-0.93616.212-0.073-0.0730.0000.0000.0000.000
64A220GLY0-0.0280.00618.290-0.005-0.0050.0000.0000.0000.000
65A221ARG10.8900.94220.8830.0480.0480.0000.0000.0000.000
66A222GLY00.0350.00923.7770.0020.0020.0000.0000.0000.000
67A223LEU0-0.0300.00125.0010.0030.0030.0000.0000.0000.000
68A224VAL00.0020.00425.811-0.004-0.0040.0000.0000.0000.000
69A225GLN0-0.006-0.00228.1730.0050.0050.0000.0000.0000.000
70A226MET00.001-0.00929.828-0.007-0.0070.0000.0000.0000.000
71A227GLY0-0.019-0.00432.3440.0050.0050.0000.0000.0000.000
72A228HIS00.0700.03934.868-0.005-0.0050.0000.0000.0000.000
73A229ARG10.8480.91237.5940.0380.0380.0000.0000.0000.000
74A230GLN00.0400.02534.3810.0000.0000.0000.0000.0000.000
75A231ASP-1-0.818-0.89136.263-0.036-0.0360.0000.0000.0000.000
76A232ASN0-0.013-0.00638.2210.0020.0020.0000.0000.0000.000
77A233LEU00.0120.00732.245-0.003-0.0030.0000.0000.0000.000
78A234HIS00.0280.01035.9390.0010.0010.0000.0000.0000.000
79A235PHE0-0.0300.01330.9030.0010.0010.0000.0000.0000.000
80A236GLN0-0.015-0.02832.824-0.002-0.0020.0000.0000.0000.000
81A237GLU-1-0.826-0.90330.882-0.057-0.0570.0000.0000.0000.000
82A238GLU-1-0.834-0.87929.108-0.055-0.0550.0000.0000.0000.000
83A239VAL0-0.0420.00024.183-0.005-0.0050.0000.0000.0000.000
84A240PHE00.0060.00424.2780.0060.0060.0000.0000.0000.000
85A241ASP-1-0.714-0.86721.102-0.106-0.1060.0000.0000.0000.000
86A242ASP-1-0.848-0.93721.231-0.114-0.1140.0000.0000.0000.000
87A243TYR0-0.076-0.02522.7710.0030.0030.0000.0000.0000.000
88A244ALA0-0.007-0.01022.616-0.018-0.0180.0000.0000.0000.000
89A245ILE0-0.031-0.00923.0560.0160.0160.0000.0000.0000.000
90A246LEU00.001-0.00724.781-0.014-0.0140.0000.0000.0000.000
91A247ILE0-0.006-0.01024.6560.0100.0100.0000.0000.0000.000
92A248PRO0-0.0160.01728.013-0.008-0.0080.0000.0000.0000.000
93A249ALA00.0450.01530.3610.0040.0040.0000.0000.0000.000
94A250GLY00.0130.00831.1910.0060.0060.0000.0000.0000.000
95A251THR0-0.0130.02231.5210.0080.0080.0000.0000.0000.000
96A252TRP00.019-0.00230.757-0.006-0.0060.0000.0000.0000.000
97A253HIS0-0.042-0.04725.457-0.007-0.0070.0000.0000.0000.000
98A254ASN00.006-0.01525.933-0.006-0.0060.0000.0000.0000.000
99A255VAL00.0160.01522.453-0.001-0.0010.0000.0000.0000.000
100A256ARG10.8700.91023.8480.0500.0500.0000.0000.0000.000
101A257ASN00.0100.01720.396-0.004-0.0040.0000.0000.0000.000
102A258THR0-0.018-0.00923.4740.0090.0090.0000.0000.0000.000
103A259GLY00.0010.00624.2550.0060.0060.0000.0000.0000.000
104A260ASN00.0060.00923.818-0.001-0.0010.0000.0000.0000.000
105A261ARG10.9250.96418.6300.0490.0490.0000.0000.0000.000
106A262PRO0-0.007-0.00715.715-0.009-0.0090.0000.0000.0000.000
107A263LEU00.0200.03517.659-0.005-0.0050.0000.0000.0000.000
108A264LYS10.7990.91011.1340.1140.1140.0000.0000.0000.000
109A265LEU00.0420.01514.8880.0090.0090.0000.0000.0000.000
110A266TYR0-0.018-0.00813.739-0.049-0.0490.0000.0000.0000.000
111A267SER0-0.055-0.03815.3290.0430.0430.0000.0000.0000.000
112A268ILE00.003-0.01016.838-0.049-0.0490.0000.0000.0000.000
113A269TYR00.0060.00317.9380.0380.0380.0000.0000.0000.000
114A270ALA00.0030.01821.629-0.017-0.0170.0000.0000.0000.000
115A271PRO00.0730.01724.4130.0090.0090.0000.0000.0000.000
116A272PRO0-0.075-0.03220.270-0.006-0.0060.0000.0000.0000.000
117A273GLN00.0760.06320.6830.0190.0190.0000.0000.0000.000
118A274HIS0-0.0210.00917.3800.0240.0240.0000.0000.0000.000
119A275PRO00.0570.04917.982-0.017-0.0170.0000.0000.0000.000
120A276HIS00.0660.06313.195-0.013-0.0130.0000.0000.0000.000
121A277GLY0-0.031-0.01312.0200.0370.0370.0000.0000.0000.000
122A278THR0-0.030-0.00612.3300.0350.0350.0000.0000.0000.000
123A279VAL0-0.034-0.0269.292-0.091-0.0910.0000.0000.0000.000
124A280HIS0-0.0060.00112.0770.0410.0410.0000.0000.0000.000
125A281GLU-1-0.879-0.95410.1300.0460.0460.0000.0000.0000.000
126A282THR0-0.008-0.02212.920-0.006-0.0060.0000.0000.0000.000
127A283LYS10.8890.92516.2640.0440.0440.0000.0000.0000.000
128A284ALA0-0.0070.00319.252-0.003-0.0030.0000.0000.0000.000
129A285ILE00.0140.01616.169-0.002-0.0020.0000.0000.0000.000
130A286ALA00.0380.02417.978-0.006-0.0060.0000.0000.0000.000
131A287MET0-0.046-0.02519.4710.0000.0000.0000.0000.0000.000
132A288ALA0-0.057-0.01622.2200.0040.0040.0000.0000.0000.000
133A289ALA0-0.070-0.02620.1300.0020.0020.0000.0000.0000.000
134A290NME0-0.0140.00522.205-0.002-0.0020.0000.0000.0000.000
135A1HOH0-0.032-0.02211.225-0.028-0.0280.0000.0000.0000.000
136A2HOH0-0.015-0.01520.988-0.002-0.0020.0000.0000.0000.000
137A3HOH0-0.058-0.05516.3160.0100.0100.0000.0000.0000.000
138A4HOH0-0.011-0.01629.0660.0020.0020.0000.0000.0000.000
139A5HOH0-0.053-0.04625.7120.0020.0020.0000.0000.0000.000
140A6HOH0-0.029-0.02227.8710.0010.0010.0000.0000.0000.000
141A7HOH0-0.073-0.0505.0250.1140.1140.0000.0000.0000.000
142A8HOH0-0.037-0.02431.7550.0030.0030.0000.0000.0000.000
143A9HOH00.016-0.00616.5120.0120.0120.0000.0000.0000.000
144A10HOH00.0200.00327.593-0.002-0.0020.0000.0000.0000.000
145A11HOH00.0400.02128.3010.0030.0030.0000.0000.0000.000
146A12HOH00.0010.01225.3890.0030.0030.0000.0000.0000.000
147A13HOH00.0070.00712.8100.0060.0060.0000.0000.0000.000
148A14HOH0-0.043-0.02733.6520.0020.0020.0000.0000.0000.000
149A15HOH00.0180.00718.566-0.004-0.0040.0000.0000.0000.000
150A16HOH0-0.057-0.05130.363-0.001-0.0010.0000.0000.0000.000
151A17HOH0-0.041-0.03314.9260.0110.0110.0000.0000.0000.000
152A18HOH0-0.029-0.01716.2510.0030.0030.0000.0000.0000.000
153A19HOH0-0.038-0.03733.0440.0010.0010.0000.0000.0000.000
154A20HOH0-0.056-0.03942.4080.0000.0000.0000.0000.0000.000
155A21HOH00.0290.02929.7240.0020.0020.0000.0000.0000.000
156A22HOH0-0.030-0.01920.5140.0050.0050.0000.0000.0000.000
157A23HOH0-0.002-0.0159.748-0.007-0.0070.0000.0000.0000.000
158A24HOH00.0500.0365.520-0.123-0.1230.0000.0000.0000.000
159A25HOH0-0.077-0.06611.2530.0260.0260.0000.0000.0000.000
160A27HOH00.0260.02436.806-0.001-0.0010.0000.0000.0000.000
161A28HOH00.0150.01030.7510.0000.0000.0000.0000.0000.000
162A29HOH0-0.035-0.04324.8690.0020.0020.0000.0000.0000.000
163A30HOH0-0.0030.00334.3370.0000.0000.0000.0000.0000.000
164A31HOH0-0.006-0.01316.6770.0090.0090.0000.0000.0000.000
165A32HOH00.0040.00938.6090.0000.0000.0000.0000.0000.000
166A34HOH0-0.014-0.01913.289-0.007-0.0070.0000.0000.0000.000
167A35HOH0-0.033-0.03024.874-0.004-0.0040.0000.0000.0000.000
168A36HOH0-0.045-0.03621.383-0.001-0.0010.0000.0000.0000.000
169A37HOH0-0.025-0.02612.7950.0150.0150.0000.0000.0000.000
170A38HOH0-0.041-0.0436.2770.1260.1260.0000.0000.0000.000
171A39HOH00.0110.00936.0190.0000.0000.0000.0000.0000.000
172A40HOH00.0440.0257.9920.0360.0360.0000.0000.0000.000
173A43HOH0-0.011-0.01020.9690.0030.0030.0000.0000.0000.000
174A44HOH0-0.040-0.03323.8540.0000.0000.0000.0000.0000.000
175A45HOH00.0370.03919.162-0.004-0.0040.0000.0000.0000.000
176A46HOH0-0.022-0.01230.5930.0000.0000.0000.0000.0000.000
177A47HOH00.0450.02615.042-0.015-0.0150.0000.0000.0000.000
178A48HOH0-0.031-0.01935.2230.0010.0010.0000.0000.0000.000
179A49HOH0-0.050-0.04725.8960.0010.0010.0000.0000.0000.000
180A51HOH0-0.038-0.03817.0450.0060.0060.0000.0000.0000.000
181A52HOH0-0.035-0.01910.1380.0340.0340.0000.0000.0000.000
182A53HOH0-0.055-0.05618.7360.0040.0040.0000.0000.0000.000
183A54HOH00.0030.00733.195-0.001-0.0010.0000.0000.0000.000
184A56HOH0-0.016-0.00615.6340.0100.0100.0000.0000.0000.000
185A57HOH0-0.003-0.01633.083-0.002-0.0020.0000.0000.0000.000
186A59HOH0-0.011-0.02523.527-0.003-0.0030.0000.0000.0000.000
187A60HOH0-0.053-0.04914.5910.0120.0120.0000.0000.0000.000
188A61HOH00.0000.00626.3090.0000.0000.0000.0000.0000.000
189A63HOH0-0.016-0.01118.6630.0060.0060.0000.0000.0000.000
190A64HOH0-0.030-0.02134.3730.0010.0010.0000.0000.0000.000
191A65HOH00.001-0.01221.0920.0030.0030.0000.0000.0000.000
192A66HOH0-0.026-0.01920.2070.0090.0090.0000.0000.0000.000
193A68HOH0-0.087-0.06225.7080.0030.0030.0000.0000.0000.000
194A69HOH0-0.021-0.03319.5920.0030.0030.0000.0000.0000.000
195A70HOH0-0.030-0.03217.2050.0060.0060.0000.0000.0000.000
196A71HOH0-0.054-0.04035.9520.0010.0010.0000.0000.0000.000
197A72HOH0-0.024-0.02624.6930.0040.0040.0000.0000.0000.000
198A74HOH00.0240.0219.691-0.047-0.0470.0000.0000.0000.000
199A75HOH0-0.0110.00117.740-0.001-0.0010.0000.0000.0000.000
200A76HOH0-0.041-0.0289.240-0.041-0.0410.0000.0000.0000.000
201A77HOH0-0.053-0.0398.9270.0480.0480.0000.0000.0000.000
202A78HOH0-0.022-0.01524.3840.0030.0030.0000.0000.0000.000
203A79HOH0-0.048-0.0417.0530.0720.0720.0000.0000.0000.000
204A81HOH0-0.030-0.02420.1710.0050.0050.0000.0000.0000.000
205A83HOH0-0.048-0.03024.0770.0010.0010.0000.0000.0000.000
206A85HOH0-0.030-0.04427.6370.0000.0000.0000.0000.0000.000
207A87HOH00.0280.01819.4780.0000.0000.0000.0000.0000.000
208A90HOH0-0.020-0.01913.294-0.033-0.0330.0000.0000.0000.000
209A91HOH0-0.039-0.03922.4150.0030.0030.0000.0000.0000.000
210A92HOH0-0.033-0.04032.4750.0010.0010.0000.0000.0000.000
211A94HOH0-0.019-0.01326.2830.0010.0010.0000.0000.0000.000
212A95HOH00.0260.0156.177-0.026-0.0260.0000.0000.0000.000
213A97HOH00.0470.03013.070-0.008-0.0080.0000.0000.0000.000
214A98HOH0-0.024-0.01535.0720.0000.0000.0000.0000.0000.000
215A99HOH0-0.034-0.02816.1220.0070.0070.0000.0000.0000.000
216A103HOH0-0.028-0.03914.2540.0110.0110.0000.0000.0000.000
217A104HOH0-0.036-0.04131.0210.0020.0020.0000.0000.0000.000
218A105HOH00.0220.01210.286-0.023-0.0230.0000.0000.0000.000
219A106HOH0-0.004-0.01022.2860.0000.0000.0000.0000.0000.000
220A107HOH00.0270.01838.1190.0010.0010.0000.0000.0000.000
221A109HOH0-0.032-0.02128.5120.0010.0010.0000.0000.0000.000
222A110HOH0-0.038-0.02428.8770.0000.0000.0000.0000.0000.000
223A112HOH0-0.026-0.02435.5930.0000.0000.0000.0000.0000.000
224A113HOH0-0.018-0.01342.0640.0000.0000.0000.0000.0000.000
225A115HOH00.0090.01336.7240.0010.0010.0000.0000.0000.000
226A116HOH0-0.026-0.02426.1040.0030.0030.0000.0000.0000.000
227A121HOH00.0100.00220.2620.0010.0010.0000.0000.0000.000
228A122HOH0-0.024-0.03034.6240.0010.0010.0000.0000.0000.000
229A126HOH00.0290.02233.101-0.002-0.0020.0000.0000.0000.000
230A131HOH0-0.019-0.0222.9230.8150.3820.7990.397-0.763-0.009
231A134HOH0-0.044-0.0418.0440.0560.0560.0000.0000.0000.000
232A136HOH00.0440.03420.180-0.006-0.0060.0000.0000.0000.000
233A137HOH0-0.040-0.03423.4400.0020.0020.0000.0000.0000.000
234A138HOH0-0.043-0.0238.4210.0270.0270.0000.0000.0000.000
235A140HOH00.0290.02413.453-0.004-0.0040.0000.0000.0000.000
236A142HOH0-0.023-0.03826.949-0.001-0.0010.0000.0000.0000.000
237A143HOH00.0200.04426.652-0.001-0.0010.0000.0000.0000.000