FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: PGY41

Calculation Name: 3EW1-A-Xray33

Preferred Name:
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Target Type:
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Ligand Name:
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ligand 3-letter code:
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PDB ID: 3EW1

Chain ID: A

ChEMBL ID:
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UniProt ID: Q8KKW2

Base Structure: X-ray

Registration Date: 2018-09-07

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 224
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1286215.371764
FMO2-HF: Nuclear repulsion 1228718.898845
FMO2-HF: Total energy -57496.472919
FMO2-MP2: Total energy -57661.717772


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PHE)


Summations of interaction energy for fragment #1(A:1:PHE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-23.892-11.00423.696-9.652-26.931-0.006
Interaction energy analysis for fragmet #1(A:1:PHE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.012 / q_NPA : -0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ALA00.0220.0012.823-3.2240.6922.530-2.386-4.0600.013
4A4SER0-0.055-0.0413.783-0.636-1.1730.0351.159-0.6570.002
5A5ASN0-0.066-0.0524.603-0.309-0.140-0.001-0.008-0.1600.000
6A6PHE00.0320.0282.141-2.428-2.0954.951-1.436-3.8480.012
7A7LYS10.8540.9413.2200.1330.0340.0450.313-0.259-0.001
8A8ASP-1-0.782-0.8415.9330.3080.3080.0000.0000.0000.000
9A9PHE00.046-0.0035.6990.3330.3330.0000.0000.0000.000
10A10SER0-0.093-0.1027.3540.1060.1060.0000.0000.0000.000
11A11SER0-0.062-0.0342.748-1.114-0.3140.240-0.266-0.7740.001
12A12ILE00.0130.0142.743-4.502-2.0455.521-1.790-6.1880.002
13A13ALA00.1000.1224.274-0.980-0.8360.002-0.049-0.0960.000
14A14SER0-0.053-0.0336.369-0.179-0.1790.0000.0000.0000.000
15A15ALA00.0150.0385.426-0.005-0.0050.0000.0000.0000.000
16A16SER00.0490.0486.9910.1940.1940.0000.0000.0000.000
17A17SER00.0270.0273.792-0.847-0.5380.004-0.074-0.2390.000
18A18SER0-0.0050.0095.5080.5760.5760.0000.0000.0000.000
19A19TRP0-0.020-0.0103.481-1.170-0.5780.012-0.141-0.463-0.001
20A20GLN0-0.006-0.0178.0810.0970.0970.0000.0000.0000.000
21A21ASN00.0180.03111.3240.0050.0050.0000.0000.0000.000
22A22GLN00.0530.00513.739-0.019-0.0190.0000.0000.0000.000
23A23SER0-0.038-0.00116.7120.0270.0270.0000.0000.0000.000
24A24GLY00.0600.05216.8740.0150.0150.0000.0000.0000.000
25A25SER00.0240.01616.407-0.016-0.0160.0000.0000.0000.000
26A26THR0-0.029-0.02212.572-0.013-0.0130.0000.0000.0000.000
27A27MET0-0.052-0.0059.4710.0800.0800.0000.0000.0000.000
28A28ILE0-0.027-0.0079.620-0.119-0.1190.0000.0000.0000.000
29A29ILE00.004-0.0027.6050.1200.1200.0000.0000.0000.000
30A30GLN00.0100.0168.845-0.062-0.0620.0000.0000.0000.000
31A31VAL00.0560.0288.8110.0560.0560.0000.0000.0000.000
32A32ASP-1-0.757-0.8639.862-0.057-0.0570.0000.0000.0000.000
33A33SER00.008-0.02012.3140.0400.0400.0000.0000.0000.000
34A34PHE0-0.097-0.03513.2160.0230.0230.0000.0000.0000.000
35A35GLY00.0480.02514.391-0.001-0.0010.0000.0000.0000.000
36A36ASN0-0.052-0.03015.343-0.003-0.0030.0000.0000.0000.000
37A37VAL00.0180.01911.8160.0080.0080.0000.0000.0000.000
38A38SER0-0.021-0.00413.6550.0170.0170.0000.0000.0000.000
39A39GLY00.049-0.00113.046-0.036-0.0360.0000.0000.0000.000
40A40GLN0-0.0200.00113.8380.0510.0510.0000.0000.0000.000
41A41TYR00.0490.02514.160-0.063-0.0630.0000.0000.0000.000
42A42VAL0-0.051-0.01015.9310.0290.0290.0000.0000.0000.000
43A43ASN00.024-0.00617.404-0.024-0.0240.0000.0000.0000.000
44A44ARG10.8360.89616.1180.3020.3020.0000.0000.0000.000
45A45ALA00.0300.03621.1580.0060.0060.0000.0000.0000.000
46A46GLN0-0.0060.00622.3760.0160.0160.0000.0000.0000.000
47A47GLY00.0320.01325.7680.0040.0040.0000.0000.0000.000
48A48THR0-0.0180.00324.8270.0040.0040.0000.0000.0000.000
49A49GLY00.0970.04927.352-0.002-0.0020.0000.0000.0000.000
50A79CYS0-0.042-0.02524.956-0.001-0.0010.0000.0000.0000.000
51A51GLN00.015-0.00323.122-0.023-0.0230.0000.0000.0000.000
52A52ASN0-0.032-0.02221.589-0.012-0.0120.0000.0000.0000.000
53A53SER00.0230.01622.3010.0020.0020.0000.0000.0000.000
54A54PRO00.0340.02918.749-0.005-0.0050.0000.0000.0000.000
55A55TYR0-0.0210.00219.3080.0210.0210.0000.0000.0000.000
56A56PRO00.0270.01218.604-0.026-0.0260.0000.0000.0000.000
57A57LEU00.0070.03613.0010.0140.0140.0000.0000.0000.000
58A58THR00.004-0.00616.791-0.007-0.0070.0000.0000.0000.000
59A59GLY00.0550.00716.059-0.004-0.0040.0000.0000.0000.000
60A60ARG10.8180.90716.2000.0090.0090.0000.0000.0000.000
61A61VAL00.0030.00610.706-0.008-0.0080.0000.0000.0000.000
62A62ASN0-0.052-0.03013.8100.0090.0090.0000.0000.0000.000
63A63GLY00.0800.04911.974-0.010-0.0100.0000.0000.0000.000
64A64THR00.0650.0058.9100.0490.0490.0000.0000.0000.000
65A65PHE0-0.067-0.02010.630-0.031-0.0310.0000.0000.0000.000
66A66ILE00.0080.00410.2960.0160.0160.0000.0000.0000.000
67A67ALA0-0.0030.00713.342-0.014-0.0140.0000.0000.0000.000
68A68PHE00.006-0.00312.8720.0000.0000.0000.0000.0000.000
69A69SER00.0220.02216.6750.0070.0070.0000.0000.0000.000
70A70VAL0-0.022-0.00217.995-0.014-0.0140.0000.0000.0000.000
71A71GLY00.0130.02220.6770.0120.0120.0000.0000.0000.000
72A72TRP00.011-0.01619.926-0.015-0.0150.0000.0000.0000.000
73A73ASN00.0380.01025.5120.0010.0010.0000.0000.0000.000
74A74ASN00.0590.02823.4660.0130.0130.0000.0000.0000.000
75A75SER0-0.084-0.03626.086-0.001-0.0010.0000.0000.0000.000
76A76THR0-0.0210.01327.0210.0020.0020.0000.0000.0000.000
77A77GLU-1-0.756-0.88327.819-0.112-0.1120.0000.0000.0000.000
78A78ASN00.008-0.00828.030-0.008-0.0080.0000.0000.0000.000
79A80ASN0-0.0020.03929.9160.0030.0030.0000.0000.0000.000
80A81SER00.0110.00327.3260.0050.0050.0000.0000.0000.000
81A82ALA0-0.042-0.02725.040-0.005-0.0050.0000.0000.0000.000
82A83THR00.0170.03620.3880.0050.0050.0000.0000.0000.000
83A84GLY00.0370.03020.392-0.006-0.0060.0000.0000.0000.000
84A85TRP0-0.047-0.03616.1220.0020.0020.0000.0000.0000.000
85A86THR00.000-0.03416.6090.0080.0080.0000.0000.0000.000
86A87GLY0-0.009-0.01714.365-0.010-0.0100.0000.0000.0000.000
87A88TYR0-0.051-0.03711.5490.0210.0210.0000.0000.0000.000
88A89ALA00.0090.0186.045-0.041-0.0410.0000.0000.0000.000
89A90GLN0-0.017-0.0197.4980.0810.0810.0000.0000.0000.000
90A91VAL0-0.014-0.0105.577-0.078-0.0780.0000.0000.0000.000
91A92ASN0-0.099-0.0617.7120.0180.0180.0000.0000.0000.000
92A93GLY00.0570.0299.972-0.021-0.0210.0000.0000.0000.000
93A94ASN0-0.067-0.0539.318-0.006-0.0060.0000.0000.0000.000
94A95ASN00.0200.0225.8450.1700.1700.0000.0000.0000.000
95A96THR0-0.0300.0061.9190.083-1.1683.754-0.689-1.8140.001
96A97GLU-1-0.731-0.8124.821-0.419-0.369-0.001-0.003-0.0450.000
97A98ILE0-0.021-0.0146.8810.1100.1100.0000.0000.0000.000
98A99VAL00.0050.0149.102-0.024-0.0240.0000.0000.0000.000
99A100THR0-0.061-0.04312.6690.0230.0230.0000.0000.0000.000
100A101SER00.0480.01715.368-0.001-0.0010.0000.0000.0000.000
101A102TRP0-0.064-0.02718.6980.0030.0030.0000.0000.0000.000
102A103ASN00.008-0.00720.7730.0070.0070.0000.0000.0000.000
103A104LEU0-0.005-0.01123.783-0.007-0.0070.0000.0000.0000.000
104A105ALA00.0130.00725.8180.0070.0070.0000.0000.0000.000
105A106TYR0-0.067-0.05128.869-0.006-0.0060.0000.0000.0000.000
106A107GLU-1-0.842-0.93131.275-0.048-0.0480.0000.0000.0000.000
107A108GLY00.0370.03134.965-0.003-0.0030.0000.0000.0000.000
108A109GLY0-0.018-0.01136.1680.0020.0020.0000.0000.0000.000
109A110SER0-0.037-0.02539.6140.0020.0020.0000.0000.0000.000
110A111GLY00.0550.04339.1930.0030.0030.0000.0000.0000.000
111A112PRO0-0.0200.01135.250-0.002-0.0020.0000.0000.0000.000
112A113ALA0-0.0140.00733.6990.0040.0040.0000.0000.0000.000
113A114ILE0-0.011-0.02527.950-0.004-0.0040.0000.0000.0000.000
114A115GLU-1-0.847-0.86627.405-0.066-0.0660.0000.0000.0000.000
115A116GLN0-0.030-0.01725.182-0.001-0.0010.0000.0000.0000.000
116A117GLY00.0750.03023.1370.0000.0000.0000.0000.0000.000
117A118GLN0-0.038-0.00718.7210.0080.0080.0000.0000.0000.000
118A119ASP-1-0.732-0.82915.516-0.185-0.1850.0000.0000.0000.000
119A120THR00.000-0.01111.7090.0130.0130.0000.0000.0000.000
120A121PHE0-0.015-0.0049.562-0.011-0.0110.0000.0000.0000.000
121A122GLN00.0500.0168.349-0.028-0.0280.0000.0000.0000.000
122A123TYR00.0330.0232.630-4.730-2.5834.680-1.555-5.273-0.015
123A124VAL00.0040.0095.2140.3530.401-0.001-0.003-0.0440.000
124A125PRO00.0550.0375.673-0.376-0.3760.0000.0000.0000.000
125A126THR00.0200.0446.6590.3730.3730.0000.0000.0000.000
126A127THR0-0.0170.0008.6500.1030.1030.0000.0000.0000.000
127A128GLU-1-0.901-0.9549.545-0.653-0.6530.0000.0000.0000.000
128A129ASN0-0.026-0.01613.6270.0620.0620.0000.0000.0000.000
129A130LYS11.0071.00616.7730.1100.1100.0000.0000.0000.000
130A131SER00.0630.07319.0220.0080.0080.0000.0000.0000.000
131A132LEU00.0740.07820.860-0.014-0.0140.0000.0000.0000.000
132A133LEU0-0.0100.00322.3190.0010.0010.0000.0000.0000.000
133A134LYS10.9790.98222.4680.1840.1840.0000.0000.0000.000
134A0NME00.0600.06326.3150.0090.0090.0000.0000.0000.000
135A201HOH0-0.029-0.03721.4260.0050.0050.0000.0000.0000.000
136A204HOH0-0.014-0.02021.559-0.006-0.0060.0000.0000.0000.000
137A205HOH00.0190.02320.7350.0030.0030.0000.0000.0000.000
138A213HOH0-0.053-0.03920.9520.0070.0070.0000.0000.0000.000
139A239HOH00.0150.00821.5730.0050.0050.0000.0000.0000.000
140A249HOH0-0.008-0.00827.845-0.003-0.0030.0000.0000.0000.000
141A259HOH0-0.003-0.00315.7680.0160.0160.0000.0000.0000.000
142A262HOH0-0.0030.0009.924-0.023-0.0230.0000.0000.0000.000
143A263HOH00.0220.01632.1450.0020.0020.0000.0000.0000.000
144A267HOH0-0.021-0.01225.0010.0040.0040.0000.0000.0000.000
145A269HOH0-0.029-0.01025.899-0.002-0.0020.0000.0000.0000.000
146A272HOH0-0.0120.00118.790-0.009-0.0090.0000.0000.0000.000
147A273HOH00.0210.01525.785-0.002-0.0020.0000.0000.0000.000
148A290HOH00.0410.04613.5590.0150.0150.0000.0000.0000.000
149A293HOH0-0.018-0.0206.217-0.076-0.0760.0000.0000.0000.000
150A294HOH0-0.089-0.10020.7770.0010.0010.0000.0000.0000.000
151A300HOH00.0090.01023.414-0.006-0.0060.0000.0000.0000.000
152A306HOH0-0.030-0.01430.8830.0000.0000.0000.0000.0000.000
153A308HOH0-0.005-0.00813.564-0.008-0.0080.0000.0000.0000.000
154A327HOH0-0.023-0.02026.913-0.005-0.0050.0000.0000.0000.000
155A331HOH0-0.026-0.01523.7910.0060.0060.0000.0000.0000.000
156A332HOH0-0.060-0.0436.9020.0600.0600.0000.0000.0000.000
157A340HOH0-0.007-0.02011.388-0.003-0.0030.0000.0000.0000.000
158A349HOH0-0.014-0.00414.781-0.009-0.0090.0000.0000.0000.000
159A351HOH0-0.028-0.0163.201-0.368-0.1390.009-0.078-0.1590.000
160A370HOH0-0.055-0.03315.9780.0130.0130.0000.0000.0000.000
161A379HOH0-0.028-0.03531.4380.0000.0000.0000.0000.0000.000
162A383HOH0-0.023-0.01715.7930.0080.0080.0000.0000.0000.000
163A391HOH0-0.035-0.03216.7720.0050.0050.0000.0000.0000.000
164A397HOH0-0.038-0.02124.3790.0010.0010.0000.0000.0000.000
165A399HOH0-0.034-0.02742.0530.0010.0010.0000.0000.0000.000
166A407HOH0-0.041-0.06034.2610.0010.0010.0000.0000.0000.000
167A428HOH0-0.001-0.00113.2090.0050.0050.0000.0000.0000.000
168A436HOH0-0.054-0.05512.5500.0050.0050.0000.0000.0000.000
169A438HOH00.0010.00317.973-0.008-0.0080.0000.0000.0000.000
170A444HOH0-0.018-0.01619.2920.0020.0020.0000.0000.0000.000
171A446HOH0-0.036-0.02131.7720.0010.0010.0000.0000.0000.000
172A449HOH0-0.013-0.01537.5650.0000.0000.0000.0000.0000.000
173A450HOH0-0.015-0.02621.8940.0060.0060.0000.0000.0000.000
174A454HOH0-0.052-0.03128.1830.0030.0030.0000.0000.0000.000
175A460HOH0-0.033-0.02410.404-0.001-0.0010.0000.0000.0000.000
176A464HOH0-0.026-0.01515.577-0.006-0.0060.0000.0000.0000.000
177A469HOH0-0.004-0.01714.453-0.010-0.0100.0000.0000.0000.000
178A471HOH00.0280.02636.082-0.001-0.0010.0000.0000.0000.000
179A475HOH00.0260.01912.414-0.038-0.0380.0000.0000.0000.000
180A483HOH0-0.018-0.01522.5960.0020.0020.0000.0000.0000.000
181A490HOH00.0020.02814.271-0.005-0.0050.0000.0000.0000.000
182A494HOH0-0.043-0.03024.7320.0020.0020.0000.0000.0000.000
183A495HOH0-0.038-0.02819.550-0.003-0.0030.0000.0000.0000.000
184A502HOH0-0.028-0.02429.4500.0010.0010.0000.0000.0000.000
185A516HOH0-0.040-0.0338.3450.0140.0140.0000.0000.0000.000
186A539HOH0-0.019-0.01321.826-0.001-0.0010.0000.0000.0000.000
187A550HOH0-0.065-0.04439.0700.0010.0010.0000.0000.0000.000
188A557HOH0-0.034-0.0359.9180.0410.0410.0000.0000.0000.000
189A561HOH0-0.041-0.05717.7790.0100.0100.0000.0000.0000.000
190A563HOH0-0.025-0.0362.842-2.192-0.3270.257-1.106-1.016-0.008
191A564HOH00.0620.0612.593-1.959-1.2481.374-1.033-1.052-0.009
192A567HOH0-0.018-0.00310.1190.0170.0170.0000.0000.0000.000
193A583HOH0-0.034-0.0256.0160.0730.0730.0000.0000.0000.000
194A596HOH0-0.023-0.01520.4470.0050.0050.0000.0000.0000.000
195A600HOH00.0370.0229.3850.0010.0010.0000.0000.0000.000
196A606HOH0-0.022-0.0239.644-0.029-0.0290.0000.0000.0000.000
197A612HOH0-0.006-0.0142.544-1.537-0.6000.287-0.505-0.719-0.003
198A628HOH0-0.035-0.03410.0550.0450.0450.0000.0000.0000.000
199A631HOH00.0330.0194.5930.1980.239-0.001-0.002-0.0390.000
200A663HOH0-0.035-0.01826.5390.0010.0010.0000.0000.0000.000
201A690HOH0-0.034-0.03330.2020.0010.0010.0000.0000.0000.000
202A723HOH0-0.016-0.01019.9410.0070.0070.0000.0000.0000.000
203A735HOH0-0.024-0.01119.550-0.002-0.0020.0000.0000.0000.000
204A750HOH0-0.015-0.01116.826-0.001-0.0010.0000.0000.0000.000
205A754HOH0-0.071-0.0476.9430.0350.0350.0000.0000.0000.000
206A760HOH0-0.0020.00233.438-0.002-0.0020.0000.0000.0000.000
207A792HOH0-0.029-0.0227.878-0.069-0.0690.0000.0000.0000.000
208A802HOH00.0050.0037.0160.0100.0100.0000.0000.0000.000
209A876HOH0-0.070-0.06921.360-0.003-0.0030.0000.0000.0000.000
210A877HOH00.0370.02611.562-0.008-0.0080.0000.0000.0000.000
211A892HOH0-0.107-0.1296.8870.0450.0450.0000.0000.0000.000
212A893HOH0-0.023-0.00730.9100.0010.0010.0000.0000.0000.000
213A898HOH00.0140.00319.816-0.009-0.0090.0000.0000.0000.000
214A899HOH00.0060.00218.739-0.002-0.0020.0000.0000.0000.000
215B225HOH0-0.0030.00122.5080.0000.0000.0000.0000.0000.000
216B227HOH00.0270.02220.6600.0010.0010.0000.0000.0000.000
217B244HOH00.0130.01213.1180.0040.0040.0000.0000.0000.000
218B888HOH00.0380.06719.0110.0030.0030.0000.0000.0000.000
219C203HOH0-0.007-0.0114.7010.1800.207-0.0010.000-0.0260.000
220C212HOH0-0.020-0.01131.5790.0030.0030.0000.0000.0000.000
221C271HOH0-0.019-0.03120.192-0.002-0.0020.0000.0000.0000.000
222C347HOH00.0080.01014.7820.0020.0020.0000.0000.0000.000
223C348HOH0-0.032-0.02433.8920.0010.0010.0000.0000.0000.000
224C660HOH0-0.028-0.02229.122-0.004-0.0040.0000.0000.0000.000