FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: PJ49P

Calculation Name: 3MVL-A-Xray9

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 4-{[5-(cyclopropylcarbamoyl)-2-methylphenyl]amino}-5-methyl-n-propylpyrrolo[2,1-f][1,2,4]triazine-6-carboxamide

ligand 3-letter code: 38P

PDB ID: 3MVL

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-05-17

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:MMFF94x
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName 38P
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5761341.905636
FMO2-HF: Nuclear repulsion 5621064.648321
FMO2-HF: Total energy -140277.257315
FMO2-MP2: Total energy -140687.472673


3D Structure
Snapshot
 
Ligand structure

38P

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-80.081-88.835141.234-38.460-94.0170.009


Interactive mode: IFIE and PIEDA for fragment #347(A:361:38P)


Summations of interaction energy for fragment #347(A:361:38P)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-80.081-88.835141.234-38.46-94.017-0.009
Interaction energy analysis for fragmet #347(A:361:38P)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.009 / q_NPA : 0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8660.91516.0770.3810.3810.0000.0000.0000.000
2A7THR00.1010.06719.0750.0010.0010.0000.0000.0000.000
3A8PHE00.0270.01613.764-0.023-0.0230.0000.0000.0000.000
4A9TYR0-0.051-0.03314.7070.0590.0590.0000.0000.0000.000
5A10ARG11.0061.01316.2550.0610.0610.0000.0000.0000.000
6A11GLN00.0020.00514.7880.0530.0530.0000.0000.0000.000
7A12GLU-1-0.943-0.97516.2170.0500.0500.0000.0000.0000.000
8A13LEU00.0050.00611.5990.0020.0020.0000.0000.0000.000
9A14ASN0-0.022-0.01413.9150.0390.0390.0000.0000.0000.000
10A15LYS10.9620.96815.403-0.180-0.1800.0000.0000.0000.000
11A16THR0-0.0150.00312.639-0.051-0.0510.0000.0000.0000.000
12A17ILE00.0570.03115.620-0.001-0.0010.0000.0000.0000.000
13A18TRP00.016-0.0076.786-0.075-0.0750.0000.0000.0000.000
14A19GLU-1-0.941-0.96813.137-0.236-0.2360.0000.0000.0000.000
15A20VAL00.003-0.0059.721-0.088-0.0880.0000.0000.0000.000
16A21PRO0-0.042-0.02411.7610.0560.0560.0000.0000.0000.000
17A22GLU-1-0.938-0.99214.615-0.227-0.2270.0000.0000.0000.000
18A23ARG10.8520.91412.8260.5990.5990.0000.0000.0000.000
19A24TYR0-0.074-0.0639.734-0.001-0.0010.0000.0000.0000.000
20A25GLN00.0590.03912.6380.0520.0520.0000.0000.0000.000
21A26ASN0-0.040-0.01512.1170.0120.0120.0000.0000.0000.000
22A27LEU00.0460.0269.605-0.014-0.0140.0000.0000.0000.000
23A28SER0-0.006-0.0268.544-0.011-0.0110.0000.0000.0000.000
24A29PRO00.0130.0098.2430.1400.1400.0000.0000.0000.000
25A30VAL00.0150.0113.868-0.677-0.0910.004-0.061-0.5290.000
26A31GLY00.0160.0145.441-0.777-0.7770.0000.0000.0000.000
27A32SER0-0.083-0.0446.0140.4210.4210.0000.0000.0000.000
28A33GLY00.0490.0332.2950.0010.2681.445-1.090-0.6230.007
29A34ALA00.0050.0132.932-0.185-1.012-0.0101.242-0.405-0.002
30A35TYR0-0.045-0.0295.4590.1940.1940.0000.0000.0000.000
31A36GLY00.0290.0167.096-0.057-0.0570.0000.0000.0000.000
32A37SER0-0.031-0.0066.5830.6180.6180.0000.0000.0000.000
33A38VAL00.0470.0272.178-3.455-2.0844.776-1.495-4.6510.011
34A39CYS0-0.070-0.0334.974-0.640-0.6400.0000.0000.0000.000
35A40ALA00.0120.0265.168-0.310-0.3100.0000.0000.0000.000
36A41ALA0-0.006-0.0166.830-0.068-0.0680.0000.0000.0000.000
37A42PHE0-0.062-0.0278.8540.0280.0280.0000.0000.0000.000
38A43ASP-1-0.777-0.85810.886-0.606-0.6060.0000.0000.0000.000
39A44THR0-0.019-0.02812.5250.0590.0590.0000.0000.0000.000
40A45LYS10.9210.95815.7220.4470.4470.0000.0000.0000.000
41A46THR00.0140.00812.2580.0040.0040.0000.0000.0000.000
42A47GLY0-0.0060.01914.6750.0500.0500.0000.0000.0000.000
43A48LEU00.0490.0239.5110.0580.0580.0000.0000.0000.000
44A49ARG10.8820.9226.460-0.206-0.2060.0000.0000.0000.000
45A50VAL00.0120.0305.4330.4850.4850.0000.0000.0000.000
46A51ALA00.005-0.0042.444-0.5400.9832.139-1.016-2.6460.002
47A52VAL00.006-0.0062.898-4.066-2.3010.421-0.814-1.373-0.008
48A53LYS10.8290.9242.1750.064-1.03213.569-3.418-9.0550.021
49A54LYS10.8860.9563.441-1.174-1.2760.0260.375-0.2990.001
50A55LEU00.0280.0105.1180.5750.5750.0000.0000.0000.000
51A56SER0-0.004-0.0198.1250.0930.0930.0000.0000.0000.000
52A57ARG10.9140.95711.606-0.193-0.1930.0000.0000.0000.000
53A58PRO00.0400.01610.2260.0330.0330.0000.0000.0000.000
54A59PHE00.1110.05312.228-0.075-0.0750.0000.0000.0000.000
55A60GLN0-0.034-0.02015.6230.0420.0420.0000.0000.0000.000
56A61SER00.0120.00915.7610.0290.0290.0000.0000.0000.000
57A62ILE00.1070.05515.909-0.067-0.0670.0000.0000.0000.000
58A63ILE0-0.0040.00512.696-0.076-0.0760.0000.0000.0000.000
59A64HIS0-0.054-0.05511.582-0.038-0.0380.0000.0000.0000.000
60A65ALA00.0420.04411.020-0.210-0.2100.0000.0000.0000.000
61A66LYS10.8910.94011.6900.4090.4090.0000.0000.0000.000
62A67ARG10.8270.9197.5870.2640.2640.0000.0000.0000.000
63A68THR0-0.027-0.0156.484-0.629-0.6290.0000.0000.0000.000
64A69TYR00.0190.0077.273-0.432-0.4320.0000.0000.0000.000
65A70ARG10.8770.9416.1221.1751.1750.0000.0000.0000.000
66A71GLU-1-0.774-0.8771.775-23.619-30.59021.816-6.654-8.190-0.050
67A72LEU0-0.022-0.0053.6500.4190.521-0.0020.128-0.2270.000
68A73ARG10.9240.9686.7081.2741.2740.0000.0000.0000.000
69A74LEU0-0.0290.0012.582-0.8540.0370.472-0.274-1.0900.000
70A75LEU00.028-0.0052.639-2.710-0.2212.059-0.823-3.7250.003
71A76LYS10.7780.9045.7821.2141.2140.0000.0000.0000.000
72A77HIS0-0.066-0.0457.9550.1150.1150.0000.0000.0000.000
73A78MET0-0.060-0.0255.2340.1570.1570.0000.0000.0000.000
74A79LYS10.8940.9588.4420.6170.6170.0000.0000.0000.000
75A80HIS00.0750.03310.5340.0920.0920.0000.0000.0000.000
76A81GLU-1-0.775-0.86710.5830.6830.6830.0000.0000.0000.000
77A82ASN00.0110.0329.7590.0700.0700.0000.0000.0000.000
78A83VAL0-0.038-0.0246.2560.4910.4910.0000.0000.0000.000
79A84ILE0-0.093-0.0292.651-4.195-1.2331.971-1.098-3.8350.007
80A85GLY00.0810.0395.475-0.785-0.7850.0000.0000.0000.000
81A86LEU0-0.036-0.0264.891-0.431-0.4310.0000.0000.0000.000
82A87LEU0-0.047-0.0226.5060.2360.2360.0000.0000.0000.000
83A88ASP-1-0.851-0.9077.145-0.718-0.7180.0000.0000.0000.000
84A89VAL0-0.0110.0006.694-0.542-0.5420.0000.0000.0000.000
85A90PHE0-0.0070.0017.7060.2930.2930.0000.0000.0000.000
86A91THR00.023-0.02110.014-0.029-0.0290.0000.0000.0000.000
87A92PRO0-0.0060.00512.8930.0150.0150.0000.0000.0000.000
88A93ALA0-0.054-0.01215.8110.0470.0470.0000.0000.0000.000
89A94ARG10.9310.97317.9940.2560.2560.0000.0000.0000.000
90A95SER0-0.022-0.01021.0770.0050.0050.0000.0000.0000.000
91A96LEU00.0830.04319.503-0.042-0.0420.0000.0000.0000.000
92A97GLU-1-0.931-0.97420.354-0.319-0.3190.0000.0000.0000.000
93A98GLU-1-0.922-0.97420.307-0.255-0.2550.0000.0000.0000.000
94A99PHE0-0.052-0.02012.531-0.007-0.0070.0000.0000.0000.000
95A100ASN0-0.033-0.04015.856-0.019-0.0190.0000.0000.0000.000
96A101ASP-1-0.903-0.93712.562-0.289-0.2890.0000.0000.0000.000
97A102VAL0-0.022-0.0227.024-0.056-0.0560.0000.0000.0000.000
98A103TYR00.0050.0066.1090.2820.2820.0000.0000.0000.000
99A104LEU00.0090.0132.276-1.3320.0000.989-0.496-1.825-0.001
100A105VAL00.011-0.0022.644-3.100-1.2530.812-1.086-1.573-0.015
101A106THR00.0360.0142.210-2.452-0.3002.490-0.956-3.685-0.004
102A107HIS00.0800.0434.035-1.612-0.9730.003-0.135-0.5070.000
103A108LEU0-0.099-0.0482.094-7.149-4.1687.511-3.210-7.283-0.005
104A109MET0-0.0010.0051.761-4.477-11.82417.275-4.398-5.5290.035
105A110GLY00.0610.0302.588-6.988-4.8481.217-0.893-2.464-0.022
106A111ALA0-0.087-0.0701.741-2.950-4.3059.933-5.025-3.552-0.008
107A112ASP-1-0.821-0.8972.7743.7080.4370.1024.455-1.286-0.006
108A113LEU00.046-0.0194.092-0.229-0.0770.002-0.023-0.1310.000
109A114ASN0-0.063-0.0137.2280.0680.0680.0000.0000.0000.000
110A115ASN0-0.037-0.0345.2000.2350.2350.0000.0000.0000.000
111A116ILE0-0.0280.0076.588-0.018-0.0180.0000.0000.0000.000
112A117VAL00.0250.0208.8330.0310.0310.0000.0000.0000.000
113A118LYS10.9320.97410.8900.0290.0290.0000.0000.0000.000
114A119CYS0-0.086-0.05310.3850.0150.0150.0000.0000.0000.000
115A120GLN0-0.029-0.01712.573-0.025-0.0250.0000.0000.0000.000
116A121LYS10.8670.94215.011-0.203-0.2030.0000.0000.0000.000
117A122LEU00.0160.01013.015-0.022-0.0220.0000.0000.0000.000
118A123THR0-0.081-0.05217.4120.0150.0150.0000.0000.0000.000
119A124ASP-1-0.819-0.93819.7820.3100.3100.0000.0000.0000.000
120A125ASP-1-0.853-0.89720.9810.2960.2960.0000.0000.0000.000
121A126HIS00.0550.02315.5200.0310.0310.0000.0000.0000.000
122A127VAL00.012-0.00216.3240.0730.0730.0000.0000.0000.000
123A128GLN00.0130.03417.7510.0670.0670.0000.0000.0000.000
124A129PHE00.0780.03814.3000.0460.0460.0000.0000.0000.000
125A130LEU0-0.002-0.00311.1540.1040.1040.0000.0000.0000.000
126A131ILE0-0.016-0.01614.4940.1490.1490.0000.0000.0000.000
127A132TYR0-0.020-0.02016.9100.0800.0800.0000.0000.0000.000
128A133GLN00.0820.02312.4580.1090.1090.0000.0000.0000.000
129A134ILE0-0.051-0.01812.6300.1420.1420.0000.0000.0000.000
130A135LEU0-0.007-0.02112.7590.0520.0520.0000.0000.0000.000
131A136ARG10.7920.85815.116-0.588-0.5880.0000.0000.0000.000
132A137GLY00.0130.01211.110-0.061-0.0610.0000.0000.0000.000
133A138LEU0-0.067-0.05010.072-0.162-0.1620.0000.0000.0000.000
134A139LYS10.8970.95011.922-0.390-0.3900.0000.0000.0000.000
135A140TYR00.0400.0409.636-0.090-0.0900.0000.0000.0000.000
136A141ILE0-0.036-0.0327.236-0.155-0.1550.0000.0000.0000.000
137A142HIS0-0.050-0.0229.709-0.187-0.1870.0000.0000.0000.000
138A143SER0-0.0060.03412.549-0.069-0.0690.0000.0000.0000.000
139A144ALA00.0140.01910.367-0.028-0.0280.0000.0000.0000.000
140A145ASP-1-0.943-0.98411.602-0.234-0.2340.0000.0000.0000.000
141A146ILE0-0.082-0.0356.113-0.152-0.1520.0000.0000.0000.000
142A147ILE0-0.023-0.0139.3090.1570.1570.0000.0000.0000.000
143A148HIS0-0.062-0.0535.417-1.478-1.4780.0000.0000.0000.000
144A149ARG10.8330.9107.3800.0220.0220.0000.0000.0000.000
145A150ASP-1-0.861-0.9238.1761.7601.7600.0000.0000.0000.000
146A151LEU00.0540.0569.1550.4880.4880.0000.0000.0000.000
147A152LYS10.7690.8549.515-2.591-2.5910.0000.0000.0000.000
148A153PRO00.0620.01310.1060.4770.4770.0000.0000.0000.000
149A154SER00.0230.0087.125-0.142-0.1420.0000.0000.0000.000
150A155ASN0-0.040-0.0085.633-0.252-0.2520.0000.0000.0000.000
151A156LEU00.0140.0176.7031.1691.1690.0000.0000.0000.000
152A157ALA00.0180.0132.954-2.835-1.4580.257-0.576-1.0580.006
153A158VAL0-0.001-0.0154.3900.0060.195-0.001-0.013-0.1750.000
154A159ASN00.0680.0364.661-0.301-0.097-0.001-0.008-0.1950.000
155A160GLU-1-0.924-0.9627.072-0.075-0.0750.0000.0000.0000.000
156A161ASP-1-0.919-0.9689.4560.5870.5870.0000.0000.0000.000
157A162CYS0-0.068-0.04210.3650.0010.0010.0000.0000.0000.000
158A163GLU-1-0.901-0.92010.3260.8440.8440.0000.0000.0000.000
159A164LEU0-0.054-0.0398.6430.3720.3720.0000.0000.0000.000
160A165LYS10.8550.8984.768-1.869-1.737-0.001-0.004-0.1270.000
161A166ILE0-0.0260.0135.9610.5240.5240.0000.0000.0000.000
162A167LEU00.0310.0082.057-5.133-1.7718.028-2.814-8.5760.011
163A168ASP-1-0.881-0.9721.7101.598-7.80524.075-6.675-7.9970.025
164A169PHE0-0.0200.0122.139-6.561-9.1927.5680.294-5.230-0.006
165A170GLY00.0540.0032.2060.772-2.9767.281-0.751-2.783-0.015
166A171LEU0-0.033-0.0122.143-0.550-1.0495.009-1.146-3.3630.004
167A172ALA00.0040.0105.3170.0220.055-0.001-0.002-0.0300.000
168A173ARG10.8500.9108.2110.3460.3460.0000.0000.0000.000
169A174HIS00.0800.07111.8580.0670.0670.0000.0000.0000.000
170A175THR0-0.039-0.05213.9830.0050.0050.0000.0000.0000.000
171A176ASP-1-0.863-0.89116.6110.4160.4160.0000.0000.0000.000
172A177ASP-1-0.831-0.92517.0160.3150.3150.0000.0000.0000.000
173A178GLU-1-0.929-0.96216.3020.0240.0240.0000.0000.0000.000
174A179MET0-0.084-0.04319.369-0.039-0.0390.0000.0000.0000.000
175A180THR0-0.065-0.02916.650-0.015-0.0150.0000.0000.0000.000
176A181GLY00.0020.01419.9630.0050.0050.0000.0000.0000.000
177A182TYR0-0.019-0.01013.771-0.026-0.0260.0000.0000.0000.000
178A183VAL00.0220.00417.4310.0690.0690.0000.0000.0000.000
179A184ALA00.0190.01615.6330.0060.0060.0000.0000.0000.000
180A185THR00.0210.02712.5170.0560.0560.0000.0000.0000.000
181A186ARG10.8630.88015.872-0.730-0.7300.0000.0000.0000.000
182A187TRP0-0.040-0.00516.996-0.023-0.0230.0000.0000.0000.000
183A188TYR00.0230.01914.804-0.007-0.0070.0000.0000.0000.000
184A189ARG10.8520.95412.298-0.599-0.5990.0000.0000.0000.000
185A190ALA00.0300.02116.207-0.050-0.0500.0000.0000.0000.000
186A191PRO00.0370.01818.206-0.018-0.0180.0000.0000.0000.000
187A192GLU-1-0.800-0.89619.6160.2820.2820.0000.0000.0000.000
188A193ILE0-0.017-0.00814.241-0.022-0.0220.0000.0000.0000.000
189A194MET0-0.0230.00718.4770.0160.0160.0000.0000.0000.000
190A195LEU0-0.036-0.02320.147-0.022-0.0220.0000.0000.0000.000
191A196ASN00.0140.00921.702-0.029-0.0290.0000.0000.0000.000
192A197TRP0-0.016-0.01023.102-0.017-0.0170.0000.0000.0000.000
193A198MET0-0.012-0.02723.497-0.017-0.0170.0000.0000.0000.000
194A199HIS00.006-0.00122.2410.0100.0100.0000.0000.0000.000
195A200TYR00.0030.01314.220-0.001-0.0010.0000.0000.0000.000
196A201ASN00.0580.02317.441-0.007-0.0070.0000.0000.0000.000
197A202GLN00.007-0.03413.1340.0840.0840.0000.0000.0000.000
198A203THR00.0120.02614.5160.0870.0870.0000.0000.0000.000
199A204VAL0-0.019-0.01413.2350.0370.0370.0000.0000.0000.000
200A205ASP-1-0.695-0.85210.8130.8890.8890.0000.0000.0000.000
201A206ILE0-0.019-0.00713.6650.0790.0790.0000.0000.0000.000
202A207TRP00.0030.01616.987-0.036-0.0360.0000.0000.0000.000
203A208SER0-0.005-0.01513.842-0.006-0.0060.0000.0000.0000.000
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