FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: PKR53

Calculation Name: 1R0M-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1R0M

Chain ID: A

ChEMBL ID:

UniProt ID: Q9RYA6

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 363
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -5780672.471812
FMO2-HF: Nuclear repulsion 5642742.078631
FMO2-HF: Total energy -137930.393181
FMO2-MP2: Total energy -138334.932251


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:5:ACE)


Summations of interaction energy for fragment #1(A:5:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.8862.2360.287-0.704-0.933-0.002
Interaction energy analysis for fragmet #1(A:5:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.054 / q_NPA : 0.018
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A7MET0-0.0210.0023.8570.5811.415-0.011-0.391-0.4320.000
4A8PHE00.0340.0347.2780.0450.0450.0000.0000.0000.000
5A9LYS10.9190.9649.2800.2550.2550.0000.0000.0000.000
6A10ILE0-0.015-0.00112.8500.0430.0430.0000.0000.0000.000
7A11GLU-1-0.956-0.98315.195-0.123-0.1230.0000.0000.0000.000
8A12ALA0-0.014-0.01017.7420.0090.0090.0000.0000.0000.000
9A13ALA0-0.003-0.00319.3960.0010.0010.0000.0000.0000.000
10A14GLU-1-0.780-0.85821.9780.0070.0070.0000.0000.0000.000
11A15ILE0-0.027-0.00824.5270.0020.0020.0000.0000.0000.000
12A16VAL00.0220.00426.8150.0000.0000.0000.0000.0000.000
13A17VAL0-0.023-0.01129.2120.0020.0020.0000.0000.0000.000
14A18ALA00.0560.03131.8070.0000.0000.0000.0000.0000.000
15A19ARG10.8630.94433.459-0.012-0.0120.0000.0000.0000.000
16A20LEU00.0300.01332.3580.0000.0000.0000.0000.0000.000
17A21PRO00.009-0.00936.137-0.001-0.0010.0000.0000.0000.000
18A22LEU0-0.0160.02137.6200.0020.0020.0000.0000.0000.000
19A23LYS10.8610.92739.669-0.034-0.0340.0000.0000.0000.000
20A24NME0-0.026-0.00941.519-0.001-0.0010.0000.0000.0000.000
21A33ACE00.031-0.00241.1160.0000.0000.0000.0000.0000.000
22A34THR0-0.105-0.07041.6850.0000.0000.0000.0000.0000.000
23A35HIS00.0590.04239.4760.0010.0010.0000.0000.0000.000
24A36LYS10.8990.95532.383-0.021-0.0210.0000.0000.0000.000
25A37VAL0-0.004-0.00134.4020.0010.0010.0000.0000.0000.000
26A38VAL0-0.011-0.00629.4020.0000.0000.0000.0000.0000.000
27A39PRO0-0.0120.00329.2580.0000.0000.0000.0000.0000.000
28A40LEU00.0130.00525.2710.0030.0030.0000.0000.0000.000
29A41LEU0-0.020-0.00321.255-0.006-0.0060.0000.0000.0000.000
30A42ILE0-0.018-0.01019.9700.0100.0100.0000.0000.0000.000
31A43LEU0-0.020-0.00716.760-0.014-0.0140.0000.0000.0000.000
32A44HIS0-0.003-0.02416.2780.0220.0220.0000.0000.0000.000
33A45GLY00.0590.01413.240-0.032-0.0320.0000.0000.0000.000
34A46GLU-1-0.846-0.9228.493-0.349-0.3490.0000.0000.0000.000
35A47GLY0-0.037-0.00910.5540.0630.0630.0000.0000.0000.000
36A48VAL0-0.066-0.01710.5690.0380.0380.0000.0000.0000.000
37A49GLN00.043-0.00213.392-0.048-0.0480.0000.0000.0000.000
38A50GLY0-0.041-0.01015.4170.0320.0320.0000.0000.0000.000
39A51VAL0-0.021-0.01716.340-0.021-0.0210.0000.0000.0000.000
40A52ALA0-0.0080.00319.7820.0100.0100.0000.0000.0000.000
41A53GLU-1-0.751-0.85721.8400.0290.0290.0000.0000.0000.000
42A54GLY0-0.014-0.01325.547-0.001-0.0010.0000.0000.0000.000
43A55THR0-0.025-0.04727.8410.0030.0030.0000.0000.0000.000
44A56MET0-0.0300.00028.5610.0010.0010.0000.0000.0000.000
45A57GLU-1-0.886-0.94132.8370.0100.0100.0000.0000.0000.000
46A58ALA0-0.012-0.01936.188-0.002-0.0020.0000.0000.0000.000
47A59ARG10.9150.94638.682-0.001-0.0010.0000.0000.0000.000
48A60PRO00.0120.02038.7750.0010.0010.0000.0000.0000.000
49A61MET0-0.045-0.02139.5380.0000.0000.0000.0000.0000.000
50A62TYR00.006-0.02133.4590.0000.0000.0000.0000.0000.000
51A63ARG10.8520.89933.9250.0050.0050.0000.0000.0000.000
52A64GLU-1-0.858-0.92434.018-0.011-0.0110.0000.0000.0000.000
53A65GLU-1-0.822-0.89530.597-0.016-0.0160.0000.0000.0000.000
54A66THR0-0.002-0.01634.9830.0020.0020.0000.0000.0000.000
55A67ILE00.022-0.00133.292-0.002-0.0020.0000.0000.0000.000
56A68ALA0-0.017-0.00733.802-0.002-0.0020.0000.0000.0000.000
57A69GLY00.0180.01335.033-0.002-0.0020.0000.0000.0000.000
58A70ALA00.0270.01129.927-0.003-0.0030.0000.0000.0000.000
59A71LEU00.000-0.01329.523-0.003-0.0030.0000.0000.0000.000
60A72ASP-1-0.955-0.97030.724-0.033-0.0330.0000.0000.0000.000
61A73LEU00.0150.01928.581-0.004-0.0040.0000.0000.0000.000
62A74LEU0-0.028-0.03024.737-0.007-0.0070.0000.0000.0000.000
63A75ARG10.8470.90026.8620.0170.0170.0000.0000.0000.000
64A76GLY00.0040.01328.957-0.004-0.0040.0000.0000.0000.000
65A77THR0-0.060-0.02827.530-0.003-0.0030.0000.0000.0000.000
66A78PHE0-0.022-0.03423.606-0.007-0.0070.0000.0000.0000.000
67A79LEU00.0170.00822.161-0.010-0.0100.0000.0000.0000.000
68A80PRO00.0210.00622.900-0.011-0.0110.0000.0000.0000.000
69A81ALA0-0.0310.00423.065-0.009-0.0090.0000.0000.0000.000
70A82ILE0-0.032-0.02518.081-0.018-0.0180.0000.0000.0000.000
71A83LEU0-0.0030.01418.432-0.021-0.0210.0000.0000.0000.000
72A84GLY0-0.005-0.00118.6470.0010.0010.0000.0000.0000.000
73A85GLN0-0.049-0.01817.159-0.022-0.0220.0000.0000.0000.000
74A86THR0-0.035-0.03111.159-0.015-0.0150.0000.0000.0000.000
75A87PHE00.0010.00111.5790.0110.0110.0000.0000.0000.000
76A88ALA00.008-0.0128.362-0.125-0.1250.0000.0000.0000.000
77A89ASN00.0180.0077.566-0.080-0.0800.0000.0000.0000.000
78A90PRO00.0840.0339.841-0.007-0.0070.0000.0000.0000.000
79A91GLU-1-0.918-0.96612.570-0.078-0.0780.0000.0000.0000.000
80A92ALA00.0040.00413.0190.0100.0100.0000.0000.0000.000
81A93VAL00.0040.01213.5010.0130.0130.0000.0000.0000.000
82A94SER0-0.031-0.02916.0670.0220.0220.0000.0000.0000.000
83A95ASP-1-1.001-0.99117.977-0.141-0.1410.0000.0000.0000.000
84A96ALA00.0370.02918.8150.0090.0090.0000.0000.0000.000
85A97LEU0-0.056-0.02320.5620.0130.0130.0000.0000.0000.000
86A98GLY0-0.044-0.02723.1120.0120.0120.0000.0000.0000.000
87A99SER0-0.028-0.01024.7470.0070.0070.0000.0000.0000.000
88A100TYR0-0.0210.00126.9110.0050.0050.0000.0000.0000.000
89A101ARG10.9600.97128.8160.0410.0410.0000.0000.0000.000
90A102GLY0-0.0050.00430.9340.0020.0020.0000.0000.0000.000
91A103ASN00.005-0.00829.345-0.001-0.0010.0000.0000.0000.000
92A104ARG10.9190.96426.1730.0200.0200.0000.0000.0000.000
93A105MET00.0250.02926.1180.0010.0010.0000.0000.0000.000
94A106ALA00.0340.01226.3620.0020.0020.0000.0000.0000.000
95A107ARG10.8900.95122.2000.0580.0580.0000.0000.0000.000
96A108ALA0-0.0060.00922.189-0.004-0.0040.0000.0000.0000.000
97A109MET0-0.0280.01621.5110.0040.0040.0000.0000.0000.000
98A110VAL00.0490.02118.9370.0040.0040.0000.0000.0000.000
99A111GLU-1-0.766-0.88117.446-0.011-0.0110.0000.0000.0000.000
100A112MET00.005-0.01316.6070.0040.0040.0000.0000.0000.000
101A113ALA00.0060.02016.9320.0200.0200.0000.0000.0000.000
102A114ALA00.0290.00513.8550.0110.0110.0000.0000.0000.000
103A115TRP0-0.054-0.03511.2720.0140.0140.0000.0000.0000.000
104A116ASP-1-0.781-0.87512.1690.1840.1840.0000.0000.0000.000
105A117LEU00.0000.01011.5130.0500.0500.0000.0000.0000.000
106A118TRP0-0.0060.0024.1910.0650.172-0.001-0.015-0.0910.000
107A119ALA00.0260.0107.6170.1710.1710.0000.0000.0000.000
108A120ARG10.8250.8988.995-0.005-0.0050.0000.0000.0000.000
109A121THR0-0.077-0.0306.1230.0660.0660.0000.0000.0000.000
110A122LEU0-0.067-0.0332.8990.1810.5900.299-0.298-0.410-0.002
111A123GLY0-0.0130.0075.9540.0520.0520.0000.0000.0000.000
112A124VAL0-0.053-0.0257.858-0.062-0.0620.0000.0000.0000.000
113A125PRO00.0250.01610.475-0.063-0.0630.0000.0000.0000.000
114A126LEU00.0340.00612.9180.0220.0220.0000.0000.0000.000
115A127GLY00.0290.00514.245-0.009-0.0090.0000.0000.0000.000
116A128THR0-0.028-0.01312.491-0.012-0.0120.0000.0000.0000.000
117A129LEU0-0.0130.0078.035-0.005-0.0050.0000.0000.0000.000
118A130LEU0-0.065-0.02011.975-0.046-0.0460.0000.0000.0000.000
119A131GLY0-0.001-0.00215.107-0.030-0.0300.0000.0000.0000.000
120A132GLY0-0.028-0.00316.568-0.013-0.0130.0000.0000.0000.000
121A133HIS0-0.057-0.03617.8410.0160.0160.0000.0000.0000.000
122A134LYS10.9020.96420.178-0.089-0.0890.0000.0000.0000.000
123A135GLU-1-0.883-0.94221.9820.1480.1480.0000.0000.0000.000
124A136GLN0-0.023-0.02023.856-0.003-0.0030.0000.0000.0000.000
125A137VAL00.0000.00525.064-0.001-0.0010.0000.0000.0000.000
126A138GLU-1-0.898-0.95127.9650.0510.0510.0000.0000.0000.000
127A139VAL0-0.045-0.01031.041-0.002-0.0020.0000.0000.0000.000
128A140GLY00.0100.00033.332-0.002-0.0020.0000.0000.0000.000
129A141VAL0-0.065-0.02436.2500.0010.0010.0000.0000.0000.000
130A142SER00.015-0.01137.963-0.002-0.0020.0000.0000.0000.000
131A143LEU0-0.058-0.01840.6390.0000.0000.0000.0000.0000.000
132A144GLY00.0300.01144.322-0.001-0.0010.0000.0000.0000.000
133A145ILE00.000-0.00546.2150.0000.0000.0000.0000.0000.000
134A146GLN0-0.036-0.01948.5010.0000.0000.0000.0000.0000.000
135A147ALA0-0.014-0.00852.238-0.001-0.0010.0000.0000.0000.000
136A148ASP-1-0.836-0.91955.7250.0130.0130.0000.0000.0000.000
137A149GLU-1-0.821-0.93455.2930.0140.0140.0000.0000.0000.000
138A150GLN0-0.0010.00155.1220.0020.0020.0000.0000.0000.000
139A151ALA00.0470.02854.2220.0010.0010.0000.0000.0000.000
140A152THR0-0.056-0.04050.1220.0010.0010.0000.0000.0000.000
141A153VAL00.0120.00950.5890.0010.0010.0000.0000.0000.000
142A154ASP-1-0.941-0.96251.4010.0220.0220.0000.0000.0000.000
143A155LEU0-0.014-0.00546.7640.0020.0020.0000.0000.0000.000
144A156VAL0-0.014-0.02246.5270.0020.0020.0000.0000.0000.000
145A157ARG10.9860.99646.813-0.020-0.0200.0000.0000.0000.000
146A158ARG10.9450.98945.730-0.024-0.0240.0000.0000.0000.000
147A159HIS10.8040.88542.606-0.028-0.0280.0000.0000.0000.000
148A160VAL00.0540.01742.7710.0020.0020.0000.0000.0000.000
149A161GLU-1-0.927-0.95243.9500.0330.0330.0000.0000.0000.000
150A162GLN0-0.056-0.02541.1090.0010.0010.0000.0000.0000.000
151A163GLY00.0880.05439.9570.0030.0030.0000.0000.0000.000
152A164TYR0-0.124-0.05836.5020.0020.0020.0000.0000.0000.000
153A165ARG10.9170.97434.761-0.055-0.0550.0000.0000.0000.000
154A166ARG10.8090.90034.802-0.034-0.0340.0000.0000.0000.000
155A167ILE0-0.0080.00939.3680.0010.0010.0000.0000.0000.000
156A168LYS10.8880.94036.699-0.026-0.0260.0000.0000.0000.000
157A169LEU0-0.007-0.00642.0530.0000.0000.0000.0000.0000.000
158A170LYS10.9650.99244.161-0.013-0.0130.0000.0000.0000.000
159A171ILE0-0.044-0.00945.8160.0000.0000.0000.0000.0000.000
160A172LYS10.9300.97048.242-0.010-0.0100.0000.0000.0000.000
161A173PRO00.0920.04650.8670.0000.0000.0000.0000.0000.000
162A174GLY0-0.019-0.00754.0490.0000.0000.0000.0000.0000.000
163A175TRP0-0.081-0.04051.9370.0000.0000.0000.0000.0000.000
164A176ASP-1-0.682-0.82451.6390.0100.0100.0000.0000.0000.000
165A177VAL00.012-0.00652.3840.0010.0010.0000.0000.0000.000
166A178GLN0-0.034-0.02254.5260.0010.0010.0000.0000.0000.000
167A179PRO00.0110.01451.1990.0010.0010.0000.0000.0000.000
168A180VAL00.0170.01449.0180.0010.0010.0000.0000.0000.000
169A181ARG10.9390.99151.480-0.011-0.0110.0000.0000.0000.000
170A182ALA00.0120.01054.6990.0010.0010.0000.0000.0000.000
171A183THR0-0.064-0.04848.4370.0010.0010.0000.0000.0000.000
172A184ARG10.7850.88246.278-0.020-0.0200.0000.0000.0000.000
173A185GLU-1-0.951-0.97251.7860.0150.0150.0000.0000.0000.000
174A186ALA0-0.065-0.02353.0070.0000.0000.0000.0000.0000.000
175A187PHE0-0.081-0.04848.6780.0010.0010.0000.0000.0000.000
176A188PRO00.0530.01849.6940.0000.0000.0000.0000.0000.000
177A189ASP-1-0.870-0.92647.2070.0240.0240.0000.0000.0000.000
178A190ILE0-0.087-0.02444.4880.0020.0020.0000.0000.0000.000
179A191ARG10.9560.98337.071-0.038-0.0380.0000.0000.0000.000
180A192LEU00.0150.00942.3920.0010.0010.0000.0000.0000.000
181A193THR0-0.020-0.01339.6140.0000.0000.0000.0000.0000.000
182A194VAL00.0200.00442.9450.0000.0000.0000.0000.0000.000
183A195ASP-1-0.864-0.93440.8540.0150.0150.0000.0000.0000.000
184A196ALA0-0.028-0.01942.9780.0000.0000.0000.0000.0000.000
185A197ASN0-0.020-0.01742.983-0.001-0.0010.0000.0000.0000.000
186A198SER0-0.017-0.00143.055-0.001-0.0010.0000.0000.0000.000
187A199ALA0-0.074-0.02745.127-0.001-0.0010.0000.0000.0000.000
188A200TYR0-0.062-0.05148.3310.0000.0000.0000.0000.0000.000
189A201THR0-0.009-0.01349.675-0.001-0.0010.0000.0000.0000.000
190A202LEU00.0420.00449.8710.0010.0010.0000.0000.0000.000
191A203ALA0-0.046-0.01952.7570.0000.0000.0000.0000.0000.000
192A204ASP-1-0.839-0.91352.7680.0050.0050.0000.0000.0000.000
193A205ALA0-0.001-0.00252.7720.0010.0010.0000.0000.0000.000
194A206GLY00.0010.00053.8130.0010.0010.0000.0000.0000.000
195A207ARG10.8540.92154.876-0.008-0.0080.0000.0000.0000.000
196A208LEU00.0440.01149.0480.0010.0010.0000.0000.0000.000
197A209ARG10.9100.96251.817-0.007-0.0070.0000.0000.0000.000
198A210GLN0-0.051-0.03253.5810.0010.0010.0000.0000.0000.000
199A211LEU00.009-0.00149.1420.0010.0010.0000.0000.0000.000
200A212ASP-1-0.781-0.87350.4610.0120.0120.0000.0000.0000.000
201A213GLU-1-0.997-0.98951.2890.0130.0130.0000.0000.0000.000
202A214TYR00.0340.01351.0480.0000.0000.0000.0000.0000.000
203A215ASP-1-0.903-0.93347.8440.0180.0180.0000.0000.0000.000
204A216LEU0-0.041-0.02145.0970.0020.0020.0000.0000.0000.000
205A217THR0-0.061-0.04639.2360.0010.0010.0000.0000.0000.000
206A218TYR00.014-0.01337.3040.0010.0010.0000.0000.0000.000
207A219ILE00.0020.00142.0860.0010.0010.0000.0000.0000.000
208A220GLU-1-0.857-0.92637.3150.0180.0180.0000.0000.0000.000
209A221GLN00.0160.00438.8520.0010.0010.0000.0000.0000.000
210A222PRO00.0350.00941.595-0.001-0.0010.0000.0000.0000.000
211A223LEU0-0.0120.00344.690-0.001-0.0010.0000.0000.0000.000
212A224ALA00.0430.02144.3150.0010.0010.0000.0000.0000.000
213A225TRP00.1080.03637.3540.0000.0000.0000.0000.0000.000
214A226ASP-1-0.928-0.96939.120-0.005-0.0050.0000.0000.0000.000
215A227ASP-1-0.768-0.87140.187-0.003-0.0030.0000.0000.0000.000
216A228LEU0-0.057-0.03836.7240.0010.0010.0000.0000.0000.000
217A229VAL0-0.017-0.01341.2140.0010.0010.0000.0000.0000.000
218A230ASP-1-0.879-0.94944.453-0.001-0.0010.0000.0000.0000.000
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