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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: PLLM9

Calculation Name: 1BS9-A-Xray13

Preferred Name:

Target Type:

Ligand Name: sulfate ion

ligand 3-letter code: SO4

PDB ID: 1BS9

Chain ID: A

ChEMBL ID:

UniProt ID: O59893

Base Structure: X-ray

Registration Date: 2017-12-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20171117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 203
LigandCharge SO4=-2
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2085137.100132
FMO2-HF: Nuclear repulsion 2008935.709476
FMO2-HF: Total energy -76201.390657
FMO2-MP2: Total energy -76412.702112


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:SER)


Summations of interaction energy for fragment #1(A:1:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-3.46-0.680000000000010.65-1.583-1.847-0.011
Interaction energy analysis for fragmet #1(A:1:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.859 / q_NPA : 0.918
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3PRO00.0350.0332.606-5.075-2.3740.651-1.578-1.775-0.011
4A4ALA00.0710.0344.5753.1943.273-0.001-0.005-0.0720.000
5A5ILE0-0.017-0.0117.2562.4062.4060.0000.0000.0000.000
6A6HIS10.7580.8479.17426.99126.9910.0000.0000.0000.000
7A7VAL00.0150.00210.9821.6971.6970.0000.0000.0000.000
8A8PHE00.0320.01613.746-0.902-0.9020.0000.0000.0000.000
9A9GLY00.0280.01617.1580.8310.8310.0000.0000.0000.000
10A10ALA0-0.019-0.00920.315-0.249-0.2490.0000.0000.0000.000
11A11ARG10.8540.94723.41812.78212.7820.0000.0000.0000.000
12A12GLU-1-0.716-0.83326.101-11.122-11.1220.0000.0000.0000.000
13A13THR00.0370.00729.883-0.215-0.2150.0000.0000.0000.000
14A14THR0-0.082-0.04632.0360.2970.2970.0000.0000.0000.000
15A15ALA00.0150.03528.4140.0110.0110.0000.0000.0000.000
16A16SER00.012-0.00627.605-0.028-0.0280.0000.0000.0000.000
17A17PRO0-0.022-0.01423.849-0.299-0.2990.0000.0000.0000.000
18A18GLY00.0570.03221.064-0.167-0.1670.0000.0000.0000.000
19A19TYR00.0160.00715.9310.1280.1280.0000.0000.0000.000
20A20GLY00.0360.03122.5830.3280.3280.0000.0000.0000.000
21A21SER00.018-0.02625.673-0.338-0.3380.0000.0000.0000.000
22A22SER0-0.081-0.05522.921-0.212-0.2120.0000.0000.0000.000
23A23SER0-0.013-0.01022.035-0.442-0.4420.0000.0000.0000.000
24A24THR00.0320.02322.196-0.379-0.3790.0000.0000.0000.000
25A25VAL00.0400.01921.096-0.222-0.2220.0000.0000.0000.000
26A26VAL0-0.030-0.02317.086-0.592-0.5920.0000.0000.0000.000
27A27ASN00.0330.00717.689-1.597-1.5970.0000.0000.0000.000
28A28GLY0-0.0020.01318.867-0.203-0.2030.0000.0000.0000.000
29A29VAL0-0.015-0.02114.788-0.127-0.1270.0000.0000.0000.000
30A30LEU0-0.024-0.01712.786-0.659-0.6590.0000.0000.0000.000
31A31SER0-0.025-0.00814.559-0.549-0.5490.0000.0000.0000.000
32A32ALA0-0.084-0.03217.1700.3740.3740.0000.0000.0000.000
33A33TYR0-0.051-0.01812.1960.2720.2720.0000.0000.0000.000
34A34PRO00.0710.03711.886-1.866-1.8660.0000.0000.0000.000
35A35GLY0-0.0070.0018.125-0.661-0.6610.0000.0000.0000.000
36A36SER0-0.086-0.0407.238-4.253-4.2530.0000.0000.0000.000
37A37THR00.0270.0157.4251.0341.0340.0000.0000.0000.000
38A38ALA00.012-0.00210.1771.0481.0480.0000.0000.0000.000
39A39GLU-1-0.848-0.89012.461-25.927-25.9270.0000.0000.0000.000
40A40ALA0-0.0030.00614.7550.9200.9200.0000.0000.0000.000
41A41ILE0-0.012-0.01218.130-0.410-0.4100.0000.0000.0000.000
42A42ASN0-0.026-0.01018.1091.1631.1630.0000.0000.0000.000
43A43TYR0-0.028-0.03021.6360.1820.1820.0000.0000.0000.000
44A44PRO00.0470.01125.176-0.071-0.0710.0000.0000.0000.000
45A45ALA0-0.0150.02027.7070.1380.1380.0000.0000.0000.000
46A52CYS0-0.075-0.01429.5740.1340.1340.0000.0000.0000.000
47A47GLY00.060-0.00533.099-0.027-0.0270.0000.0000.0000.000
48A48GLY0-0.0100.00436.5410.2780.2780.0000.0000.0000.000
49A49GLN00.0410.01536.6210.0030.0030.0000.0000.0000.000
50A50SER00.030-0.00236.532-0.252-0.2520.0000.0000.0000.000
51A51SER0-0.011-0.00234.876-0.170-0.1700.0000.0000.0000.000
52A53GLY00.0190.00431.929-0.250-0.2500.0000.0000.0000.000
53A54GLY0-0.0020.00733.6360.1010.1010.0000.0000.0000.000
54A55ALA0-0.0170.00233.1930.2010.2010.0000.0000.0000.000
55A56SER00.0310.00335.162-0.083-0.0830.0000.0000.0000.000
56A57TYR00.0460.00834.539-0.291-0.2910.0000.0000.0000.000
57A58SER00.0560.04234.510-0.278-0.2780.0000.0000.0000.000
58A59SER0-0.030-0.01233.811-0.375-0.3750.0000.0000.0000.000
59A60SER0-0.026-0.03230.952-0.460-0.4600.0000.0000.0000.000
60A61VAL00.0700.03429.714-0.512-0.5120.0000.0000.0000.000
61A62ALA0-0.0130.00029.703-0.371-0.3710.0000.0000.0000.000
62A63GLN0-0.041-0.03827.642-0.650-0.6500.0000.0000.0000.000
63A64GLY00.033-0.00225.663-0.595-0.5950.0000.0000.0000.000
64A65ILE00.0010.00924.837-0.648-0.6480.0000.0000.0000.000
65A66ALA00.0020.01124.687-0.497-0.4970.0000.0000.0000.000
66A67ALA00.0050.00921.921-0.694-0.6940.0000.0000.0000.000
67A68VAL00.006-0.00120.276-1.052-1.0520.0000.0000.0000.000
68A69ALA00.0040.00619.811-0.902-0.9020.0000.0000.0000.000
69A70SER0-0.047-0.02419.450-0.704-0.7040.0000.0000.0000.000
70A71ALA00.0130.01216.077-1.061-1.0610.0000.0000.0000.000
71A72VAL00.0030.00014.881-1.625-1.6250.0000.0000.0000.000
72A73ASN00.0200.01015.449-1.248-1.2480.0000.0000.0000.000
73A74SER0-0.024-0.01414.000-1.131-1.1310.0000.0000.0000.000
74A75PHE00.0560.0238.144-2.261-2.2610.0000.0000.0000.000
75A76ASN0-0.030-0.03510.717-1.338-1.3380.0000.0000.0000.000
76A77SER0-0.005-0.00612.100-0.001-0.0010.0000.0000.0000.000
77A78GLN0-0.052-0.0177.3842.3812.3810.0000.0000.0000.000
78A80PRO00.0650.0378.2501.6551.6550.0000.0000.0000.000
79A81SER0-0.053-0.0328.8261.2921.2920.0000.0000.0000.000
80A82THR0-0.048-0.0186.970-0.428-0.4280.0000.0000.0000.000
81A83LYS10.9040.9569.57320.62220.6220.0000.0000.0000.000
82A84ILE00.0190.00411.976-1.308-1.3080.0000.0000.0000.000
83A85VAL0-0.0090.00214.3751.3321.3320.0000.0000.0000.000
84A86LEU00.000-0.00316.888-0.754-0.7540.0000.0000.0000.000
85A87VAL00.011-0.00319.6720.6340.6340.0000.0000.0000.000
86A88GLY00.0310.01222.014-0.391-0.3910.0000.0000.0000.000
87A89TYR0-0.052-0.05325.0990.2010.2010.0000.0000.0000.000
88A90SER0-0.005-0.02528.223-0.032-0.0320.0000.0000.0000.000
89A91GLN00.0510.03630.309-0.287-0.2870.0000.0000.0000.000
90A92GLY00.016-0.00526.938-0.176-0.1760.0000.0000.0000.000
91A93GLY0-0.016-0.01126.492-0.457-0.4570.0000.0000.0000.000
92A94GLH00.018-0.02228.137-0.164-0.1640.0000.0000.0000.000
93A95ILE0-0.045-0.01525.044-0.048-0.0480.0000.0000.0000.000
94A96MET0-0.042-0.01521.035-0.260-0.2600.0000.0000.0000.000
95A97ASP-1-0.781-0.83825.697-10.520-10.5200.0000.0000.0000.000
96A98VAL00.0080.00728.5650.0230.0230.0000.0000.0000.000
97A99ALA0-0.0040.00524.290-0.007-0.0070.0000.0000.0000.000
98A100LEU0-0.033-0.03122.697-0.246-0.2460.0000.0000.0000.000
99A161CYS0-0.045-0.00525.644-0.209-0.2090.0000.0000.0000.000
100A102GLY00.0210.03029.1880.3100.3100.0000.0000.0000.000
101A103GLY0-0.015-0.03131.0670.1290.1290.0000.0000.0000.000
102A104GLY0-0.058-0.02233.3130.2880.2880.0000.0000.0000.000
103A105ASP-1-0.833-0.94033.876-9.418-9.4180.0000.0000.0000.000
104A106PRO00.008-0.00235.9000.0710.0710.0000.0000.0000.000
105A107ASN0-0.018-0.01339.4030.2620.2620.0000.0000.0000.000
106A108GLN0-0.015-0.00135.8800.0910.0910.0000.0000.0000.000
107A109GLY0-0.027-0.00737.230-0.107-0.1070.0000.0000.0000.000
108A110TYR0-0.024-0.01329.198-0.092-0.0920.0000.0000.0000.000
109A111THR00.018-0.00735.363-0.078-0.0780.0000.0000.0000.000
110A112ASN0-0.0070.00331.0860.1980.1980.0000.0000.0000.000
111A113THR00.0430.01533.461-0.228-0.2280.0000.0000.0000.000
112A114ALA0-0.0070.01430.239-0.047-0.0470.0000.0000.0000.000
113A115VAL00.009-0.00525.714-0.086-0.0860.0000.0000.0000.000
114A116GLN0-0.056-0.02325.411-0.320-0.3200.0000.0000.0000.000
115A117LEU0-0.028-0.00320.489-0.541-0.5410.0000.0000.0000.000
116A118SER00.0220.00519.1280.3760.3760.0000.0000.0000.000
117A119SER00.0840.02221.383-0.142-0.1420.0000.0000.0000.000
118A120SER0-0.027-0.01917.0030.3470.3470.0000.0000.0000.000
119A121ALA00.0320.02417.060-0.626-0.6260.0000.0000.0000.000
120A122VAL00.0150.00918.098-0.228-0.2280.0000.0000.0000.000
121A123ASN0-0.026-0.01318.4370.6930.6930.0000.0000.0000.000
122A124MET0-0.025-0.00912.8910.7820.7820.0000.0000.0000.000
123A125VAL00.0250.03715.782-0.802-0.8020.0000.0000.0000.000
124A126LYS10.8280.90316.19617.39117.3910.0000.0000.0000.000
125A127ALA0-0.006-0.00618.7820.7540.7540.0000.0000.0000.000
126A128ALA0-0.0040.01019.893-0.797-0.7970.0000.0000.0000.000
127A129ILE0-0.0200.00222.5710.5520.5520.0000.0000.0000.000
128A130PHE00.0220.01024.682-0.370-0.3700.0000.0000.0000.000
129A131MET0-0.014-0.00527.1110.2150.2150.0000.0000.0000.000
130A132GLY00.0970.04330.039-0.122-0.1220.0000.0000.0000.000
131A133ASH0-0.072-0.08631.0250.1030.1030.0000.0000.0000.000
132A134PRO00.0640.02232.8330.1770.1770.0000.0000.0000.000
133A135MET0-0.055-0.01433.6220.1190.1190.0000.0000.0000.000
134A136PHE0-0.032-0.01034.3890.0360.0360.0000.0000.0000.000
135A137ARG10.8710.91436.2907.8267.8260.0000.0000.0000.000
136A138ALA00.0210.03038.461-0.097-0.0970.0000.0000.0000.000
137A139GLY0-0.014-0.01139.1960.1600.1600.0000.0000.0000.000
138A140LEU0-0.049-0.00235.0350.0150.0150.0000.0000.0000.000
139A141SER0-0.029-0.02533.432-0.123-0.1230.0000.0000.0000.000
140A142TYR0-0.008-0.01529.982-0.038-0.0380.0000.0000.0000.000
141A143GLU-1-0.827-0.92231.225-9.216-9.2160.0000.0000.0000.000
142A144VAL0-0.053-0.03531.8670.1290.1290.0000.0000.0000.000
143A145GLY00.0320.00834.579-0.168-0.1680.0000.0000.0000.000
144A146THR0-0.027-0.03437.1530.0700.0700.0000.0000.0000.000
145A179CYS0-0.095-0.00337.9960.3240.3240.0000.0000.0000.000
146A148ALA00.0440.01340.875-0.081-0.0810.0000.0000.0000.000
147A149ALA0-0.060-0.03842.9630.1440.1440.0000.0000.0000.000
148A150GLY00.0420.00640.454-0.138-0.1380.0000.0000.0000.000
149A151GLY00.0230.04539.3670.1530.1530.0000.0000.0000.000
150A152PHE0-0.082-0.03937.2540.1060.1060.0000.0000.0000.000
151A153ASP-1-0.784-0.85337.106-8.557-8.5570.0000.0000.0000.000
152A154GLN0-0.064-0.00938.006-0.194-0.1940.0000.0000.0000.000
153A155ARG10.8730.93831.6759.8379.8370.0000.0000.0000.000
154A156PRO00.0230.01838.4730.2230.2230.0000.0000.0000.000
155A157ALA00.016-0.00940.558-0.131-0.1310.0000.0000.0000.000
156A158GLY00.0050.00141.8550.0600.0600.0000.0000.0000.000
157A159PHE0-0.060-0.01933.147-0.058-0.0580.0000.0000.0000.000
158A160SER00.0220.00835.328-0.059-0.0590.0000.0000.0000.000
159A162PRO00.0460.01028.725-0.020-0.0200.0000.0000.0000.000
160A163SER00.011-0.00825.116-0.197-0.1970.0000.0000.0000.000
161A164ALA00.0420.02526.694-0.298-0.2980.0000.0000.0000.000
162A165ALA0-0.0030.00127.083-0.062-0.0620.0000.0000.0000.000
163A166LYS10.8020.89020.73014.06614.0660.0000.0000.0000.000
164A167ILE00.0180.01523.836-0.540-0.5400.0000.0000.0000.000
165A168LYS10.9210.97726.32310.55510.5550.0000.0000.0000.000
166A169SER0-0.0020.00127.704-0.394-0.3940.0000.0000.0000.000
167A170TYR00.014-0.00327.7150.0650.0650.0000.0000.0000.000
168A178CYS0-0.088-0.03732.565-0.126-0.1260.0000.0000.0000.000
169A172ASP-1-0.647-0.74935.945-8.368-8.3680.0000.0000.0000.000
170A173ALA0-0.014-0.02739.1110.0020.0020.0000.0000.0000.000
171A174SER0-0.010-0.02642.6110.0610.0610.0000.0000.0000.000
172A175ASP-1-0.710-0.83337.423-8.600-8.6000.0000.0000.0000.000
173A176PRO0-0.035-0.01340.7770.0610.0610.0000.0000.0000.000
174A177TYR0-0.047-0.02337.9660.0530.0530.0000.0000.0000.000
175A180ASN00.0100.00141.290-0.060-0.0600.0000.0000.0000.000
176A181GLY00.0360.03143.9150.2080.2080.0000.0000.0000.000
177A182SER0-0.012-0.01245.545-0.033-0.0330.0000.0000.0000.000
178A183ASN00.0360.01242.673-0.093-0.0930.0000.0000.0000.000
179A184ALA00.0350.00641.344-0.163-0.1630.0000.0000.0000.000
180A185ALA0-0.024-0.01839.795-0.235-0.2350.0000.0000.0000.000
181A186THR00.006-0.01838.579-0.229-0.2290.0000.0000.0000.000
182A187HIS0-0.061-0.00235.218-0.443-0.4430.0000.0000.0000.000
183A188GLN00.0140.00934.335-0.582-0.5820.0000.0000.0000.000
184A189GLY0-0.0030.01533.919-0.207-0.2070.0000.0000.0000.000
185A190TYR00.008-0.01931.452-0.114-0.1140.0000.0000.0000.000
186A191GLY0-0.007-0.01228.645-0.215-0.2150.0000.0000.0000.000
187A192SER0-0.061-0.03529.311-0.138-0.1380.0000.0000.0000.000
188A193GLH0-0.037-0.04431.599-0.056-0.0560.0000.0000.0000.000
189A194TYR0-0.049-0.06130.371-0.007-0.0070.0000.0000.0000.000
190A195GLY00.0130.01326.979-0.328-0.3280.0000.0000.0000.000
191A196SER0-0.024-0.01425.992-0.525-0.5250.0000.0000.0000.000
192A197GLN00.0620.01626.796-0.306-0.3060.0000.0000.0000.000
193A198ALA00.0310.02325.052-0.195-0.1950.0000.0000.0000.000
194A199LEU0-0.0030.00219.951-0.454-0.4540.0000.0000.0000.000
195A200ALA0-0.017-0.01322.380-0.432-0.4320.0000.0000.0000.000
196A201PHE0-0.0010.01523.915-0.106-0.1060.0000.0000.0000.000
197A202VAL00.0190.00118.421-0.302-0.3020.0000.0000.0000.000
198A203LYS10.9640.97319.34512.73512.7350.0000.0000.0000.000
199A204SER0-0.092-0.03620.258-0.073-0.0730.0000.0000.0000.000
200A205LYS10.8590.93920.40112.34512.3450.0000.0000.0000.000
201A206LEU0-0.094-0.04314.441-0.569-0.5690.0000.0000.0000.000
202A207GLY-1-0.897-0.94116.433-16.652-16.6520.0000.0000.0000.000
203A208SO4-2-1.736-1.82142.327-14.891-14.8910.0000.0000.0000.000