FMODB ID: PZ1NN
Calculation Name: 1L2Y-A-MD50-91100ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandResidueName | |
LigandFragmentNumber | 0 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -22356.736971 |
---|---|
FMO2-HF: Nuclear repulsion | 17754.5859 |
FMO2-HF: Total energy | -4602.151071 |
FMO2-MP2: Total energy | -4615.561042 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-36.946 | -35.27 | 14.266 | -5.906 | -10.033 | 0.017 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | -0.008 | -0.008 | 2.944 | -3.892 | -1.620 | 0.154 | -1.091 | -1.335 | -0.007 | |
4 | 4 | GLN | 0 | 0.026 | 0.014 | 4.337 | 1.839 | 2.020 | -0.001 | -0.018 | -0.161 | 0.000 | |
5 | 5 | GLN | 0 | -0.001 | 0.016 | 2.357 | -12.614 | -10.367 | 4.559 | -3.212 | -3.594 | 0.014 | |
6 | 6 | GLN | 0 | -0.004 | -0.027 | 1.924 | -1.834 | -6.577 | 9.449 | -0.703 | -4.002 | 0.019 | |
7 | 7 | GLN | 0 | -0.013 | 0.008 | 3.009 | -2.548 | -0.829 | 0.105 | -0.882 | -0.941 | -0.009 | |
8 | 8 | GLN | 0 | 0.020 | -0.001 | 4.816 | -0.049 | -0.049 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.073 | -0.042 | 7.709 | 1.082 | 1.082 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.928 | -0.939 | 9.565 | -18.930 | -18.930 | 0.000 | 0.000 | 0.000 | 0.000 |