FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: PZ2VN

Calculation Name: 1ERE-C-Xray1

Preferred Name: Estrogen receptor alpha

Target Type: SINGLE PROTEIN

Ligand Name: estradiol

ligand 3-letter code: EST

PDB ID: 1ERE

Chain ID: C

ChEMBL ID: CHEMBL206

UniProt ID: P03372

Base Structure: X-ray

Registration Date: 2018-02-16

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20180117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 237
LigandResidueName EST
LigandFragmentNumber 237
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -3149562.357176
FMO2-HF: Nuclear repulsion 3051425.126487
FMO2-HF: Total energy -98137.230689
FMO2-MP2: Total energy -98414.30071


3D Structure
Snapshot
 
Ligand structure

EST

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-111.558-109.249107.507-50.403-59.4150.151


Interactive mode: IFIE and PIEDA for fragment #237(C:600:EST)


Summations of interaction energy for fragment #237(C:600:EST)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-111.558-109.249107.507-50.403-59.415-0.151
Interaction energy analysis for fragmet #237(C:600:EST)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.152 / q_NPA : -0.159
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1C309SER10.8690.91930.104-0.074-0.0740.0000.0000.0000.000
2C310LEU00.0860.04025.617-0.002-0.0020.0000.0000.0000.000
3C311THR00.0370.01629.5020.0070.0070.0000.0000.0000.000
4C312ALA00.0400.02227.0440.0030.0030.0000.0000.0000.000
5C313ASP-1-0.761-0.88725.9500.1470.1470.0000.0000.0000.000
6C314GLN00.0320.02025.9930.0040.0040.0000.0000.0000.000
7C315MET0-0.0300.00421.449-0.010-0.0100.0000.0000.0000.000
8C316VAL00.0610.02421.0840.0080.0080.0000.0000.0000.000
9C317SER00.0240.00820.7430.0110.0110.0000.0000.0000.000
10C318ALA0-0.011-0.00221.117-0.005-0.0050.0000.0000.0000.000
11C319LEU0-0.034-0.02717.279-0.013-0.0130.0000.0000.0000.000
12C320LEU0-0.028-0.02916.7430.0120.0120.0000.0000.0000.000
13C321ASP-1-0.909-0.94317.1770.0690.0690.0000.0000.0000.000
14C322ALA0-0.158-0.06916.065-0.034-0.0340.0000.0000.0000.000
15C323GLU-1-0.897-0.94511.5530.4570.4570.0000.0000.0000.000
16C324PRO0-0.0150.0068.833-0.064-0.0640.0000.0000.0000.000
17C325PRO0-0.0070.00710.3700.1020.1020.0000.0000.0000.000
18C326ILE00.010-0.0027.974-0.111-0.1110.0000.0000.0000.000
19C327LEU0-0.037-0.0186.3800.1240.1240.0000.0000.0000.000
20C328TYR00.007-0.0068.1820.2890.2890.0000.0000.0000.000
21C329SER00.0300.0218.349-0.274-0.2740.0000.0000.0000.000
22C330GLU-1-0.837-0.9268.720-1.236-1.2360.0000.0000.0000.000
23C331TYR0-0.030-0.02811.8450.0830.0830.0000.0000.0000.000
24C332ASP-1-0.736-0.83812.082-0.288-0.2880.0000.0000.0000.000
25C333PRO0-0.0300.01013.9890.0540.0540.0000.0000.0000.000
26C334THR00.0490.01311.7640.0500.0500.0000.0000.0000.000
27C335ARG10.8200.89114.1430.0670.0670.0000.0000.0000.000
28C336PRO0-0.047-0.02017.2940.0140.0140.0000.0000.0000.000
29C337PHE00.0370.02410.006-0.004-0.0040.0000.0000.0000.000
30C338SER00.0040.00112.4670.0000.0000.0000.0000.0000.000
31C339GLU-1-0.789-0.8988.683-0.629-0.6290.0000.0000.0000.000
32C340ALA00.0260.0008.6560.0060.0060.0000.0000.0000.000
33C341SER0-0.089-0.0659.6830.0030.0030.0000.0000.0000.000
34C342MET00.0040.0066.1880.0210.0210.0000.0000.0000.000
35C343MET00.0110.0052.838-3.970-1.5460.458-0.922-1.9590.010
36C344GLY00.0260.0245.178-0.282-0.174-0.001-0.001-0.1060.000
37C345LEU0-0.003-0.0086.919-0.286-0.2860.0000.0000.0000.000
38C346LEU0-0.023-0.0022.516-3.357-0.7130.880-0.560-2.9640.000
39C347THR00.0390.0102.565-8.034-4.3071.156-1.770-3.113-0.023
40C348ASN0-0.028-0.0233.943-0.329-0.1580.001-0.007-0.1660.000
41C349LEU0-0.042-0.0202.898-0.7180.5780.139-0.312-1.1230.001
42C350ALA00.0270.0082.304-3.125-1.2192.209-1.204-2.9110.000
43C351ASP-1-0.867-0.9503.3950.0090.0860.0680.133-0.2780.001
44C352ARG10.8580.9156.3692.1282.1280.0000.0000.0000.000
45C353GLU-1-0.835-0.8771.314-36.012-68.73967.274-30.571-3.976-0.132
46C354LEU00.0320.0335.8850.8760.8760.0000.0000.0000.000
47C355VAL00.0240.0228.2220.3540.3540.0000.0000.0000.000
48C356HIS0-0.058-0.0418.5690.3010.3010.0000.0000.0000.000
49C357MET0-0.034-0.0046.9240.2030.2030.0000.0000.0000.000
50C358ILE00.0700.0379.8660.1590.1590.0000.0000.0000.000
51C359ASN0-0.060-0.03113.2040.1250.1250.0000.0000.0000.000
52C360TRP0-0.018-0.01411.7820.0830.0830.0000.0000.0000.000
53C361ALA00.0520.02013.6340.0510.0510.0000.0000.0000.000
54C362LYS10.8370.92815.2120.0870.0870.0000.0000.0000.000
55C363ARG10.8950.94816.7340.0350.0350.0000.0000.0000.000
56C364VAL00.0000.01915.8800.0210.0210.0000.0000.0000.000
57C365PRO0-0.043-0.04118.868-0.013-0.0130.0000.0000.0000.000
58C366GLY00.0140.01122.4070.0160.0160.0000.0000.0000.000
59C367PHE00.0290.01417.743-0.008-0.0080.0000.0000.0000.000
60C368VAL0-0.011-0.02221.576-0.013-0.0130.0000.0000.0000.000
61C369ASP-1-0.918-0.94823.4660.0350.0350.0000.0000.0000.000
62C370LEU0-0.0300.00622.1160.0020.0020.0000.0000.0000.000
63C371THR0-0.072-0.04025.624-0.016-0.0160.0000.0000.0000.000
64C372LEU0-0.011-0.02323.8150.0010.0010.0000.0000.0000.000
65C373HIS00.002-0.00522.633-0.005-0.0050.0000.0000.0000.000
66C374ASP-1-0.743-0.86121.3370.0210.0210.0000.0000.0000.000
67C375GLN0-0.070-0.04119.691-0.004-0.0040.0000.0000.0000.000
68C376VAL00.0160.00517.3220.0080.0080.0000.0000.0000.000
69C377HIS00.0450.04616.5530.0000.0000.0000.0000.0000.000
70C378LEU0-0.056-0.03316.0680.0180.0180.0000.0000.0000.000
71C379LEU0-0.041-0.02412.5550.0400.0400.0000.0000.0000.000
72C380GLU-1-0.883-0.95212.326-0.002-0.0020.0000.0000.0000.000
73C381CYS0-0.083-0.04811.5090.0330.0330.0000.0000.0000.000
74C382ALA00.0070.00211.2990.0380.0380.0000.0000.0000.000
75C383TRP00.0240.0123.915-0.2890.1600.002-0.034-0.4160.000
76C384LEU00.0550.0342.364-1.993-0.0041.114-0.439-2.665-0.003
77C385GLU-1-0.847-0.9215.0020.8200.938-0.001-0.002-0.1140.000
78C386ILE0-0.031-0.0156.8740.3000.3000.0000.0000.0000.000
79C387LEU00.0010.0022.546-3.859-0.2582.230-1.520-4.3110.011
80C388MET0-0.066-0.0222.161-2.5910.9722.257-1.351-4.470-0.008
81C389ILE0-0.016-0.0053.8150.0310.2150.0040.024-0.2120.000
82C390GLY00.0270.0095.536-0.266-0.2660.0000.0000.0000.000
83C391LEU00.0090.0212.123-1.998-1.7184.029-1.007-3.3020.001
84C392VAL0-0.004-0.0094.428-1.075-0.9480.000-0.024-0.1040.000
85C393TRP0-0.024-0.0207.360-0.332-0.3320.0000.0000.0000.000
86C394ARG10.8710.9482.202-9.497-7.5691.899-1.609-2.2180.019
87C395SER0-0.029-0.0077.476-0.209-0.2090.0000.0000.0000.000
88C396MET0-0.0060.0209.894-0.150-0.1500.0000.0000.0000.000
89C397GLU-1-0.914-0.93612.8790.6300.6300.0000.0000.0000.000
90C398HIS0-0.058-0.02612.567-0.133-0.1330.0000.0000.0000.000
91C399PRO00.022-0.01113.1310.0870.0870.0000.0000.0000.000
92C400GLY0-0.063-0.02613.789-0.047-0.0470.0000.0000.0000.000
93C401LYS10.8780.93411.364-0.583-0.5830.0000.0000.0000.000
94C402LEU00.0450.0205.0340.0330.0330.0000.0000.0000.000
95C403LEU0-0.032-0.0118.074-0.138-0.1380.0000.0000.0000.000
96C404PHE00.0190.0062.564-5.469-1.2832.223-1.277-5.1320.014
97C405ALA00.0450.0184.966-0.660-0.589-0.001-0.005-0.0640.000
98C406PRO00.0110.0117.6310.1970.1970.0000.0000.0000.000
99C407ASN0-0.016-0.01610.8530.0200.0200.0000.0000.0000.000
100C408LEU0-0.004-0.0047.059-0.083-0.0830.0000.0000.0000.000
101C409LEU0-0.030-0.0029.4270.2750.2750.0000.0000.0000.000
102C410LEU0-0.0030.0156.739-0.189-0.1890.0000.0000.0000.000
103C411ASP-1-0.818-0.92810.2040.5490.5490.0000.0000.0000.000
104C412ARG10.8920.92410.355-0.365-0.3650.0000.0000.0000.000
105C413ASN0-0.088-0.05611.046-0.106-0.1060.0000.0000.0000.000
106C414GLN00.0510.00910.687-0.023-0.0230.0000.0000.0000.000
107C415GLY00.0690.0467.958-0.065-0.0650.0000.0000.0000.000
108C416LYS10.8440.9088.506-0.290-0.2900.0000.0000.0000.000
109C417CYS0-0.073-0.01710.081-0.037-0.0370.0000.0000.0000.000
110C418VAL00.0010.0125.016-0.032-0.0320.0000.0000.0000.000
111C419GLU-1-0.820-0.9097.965-0.661-0.6610.0000.0000.0000.000
112C420GLY00.001-0.0046.783-0.556-0.5560.0000.0000.0000.000
113C421MET00.0010.0103.281-1.721-0.3530.618-0.361-1.625-0.001
114C422VAL0-0.036-0.0165.1460.5530.617-0.0010.000-0.0640.000
115C423GLU-1-0.830-0.9218.103-0.117-0.1170.0000.0000.0000.000
116C424ILE00.0210.0162.101-1.014-0.2902.186-0.550-2.3600.002
117C425PHE00.032-0.0103.862-0.0700.4060.002-0.046-0.4310.000
118C426ASP-1-0.815-0.8736.9030.5080.5080.0000.0000.0000.000
119C427MET0-0.062-0.0226.8190.0190.0190.0000.0000.0000.000
120C428LEU00.0730.0282.627-0.999-0.0600.308-0.187-1.0600.001
121C429LEU0-0.008-0.0047.231-0.101-0.1010.0000.0000.0000.000
122C430ALA0-0.027-0.0039.988-0.092-0.0920.0000.0000.0000.000
123C431THR0-0.013-0.0219.290-0.129-0.1290.0000.0000.0000.000
124C432SER0-0.0050.0099.117-0.137-0.1370.0000.0000.0000.000
125C433SER0-0.028-0.02910.980-0.128-0.1280.0000.0000.0000.000
126C434ARG10.9340.97014.268-0.498-0.4980.0000.0000.0000.000
127C435PHE00.0760.00410.514-0.085-0.0850.0000.0000.0000.000
128C436ARG10.9080.94913.677-0.756-0.7560.0000.0000.0000.000
129C437MET0-0.079-0.04116.881-0.075-0.0750.0000.0000.0000.000
130C438MET0-0.104-0.03218.545-0.038-0.0380.0000.0000.0000.000
131C439ASN00.0210.02019.3280.0020.0020.0000.0000.0000.000
132C440LEU0-0.038-0.00913.761-0.037-0.0370.0000.0000.0000.000
133C441GLN00.0400.01017.3010.0080.0080.0000.0000.0000.000
134C442GLY00.0670.02815.9620.0430.0430.0000.0000.0000.000
135C443GLU-1-0.881-0.96016.7100.3100.3100.0000.0000.0000.000
136C444GLU-1-0.749-0.82118.0690.3670.3670.0000.0000.0000.000
137C445PHE0-0.006-0.0039.0970.0190.0190.0000.0000.0000.000
138C446VAL00.0270.00913.8080.0370.0370.0000.0000.0000.000
139C447CYS0-0.032-0.01115.299-0.045-0.0450.0000.0000.0000.000
140C448LEU0-0.012-0.01213.983-0.021-0.0210.0000.0000.0000.000
141C449LYS10.9150.9809.466-0.618-0.6180.0000.0000.0000.000
142C450SER00.0400.01712.653-0.047-0.0470.0000.0000.0000.000
143C451ILE0-0.049-0.02315.781-0.035-0.0350.0000.0000.0000.000
144C452ILE0-0.030-0.01710.621-0.031-0.0310.0000.0000.0000.000
145C453LEU0-0.0060.01113.860-0.035-0.0350.0000.0000.0000.000
146C454LEU00.000-0.01214.746-0.047-0.0470.0000.0000.0000.000
147C455ASN0-0.023-0.02617.116-0.057-0.0570.0000.0000.0000.000
148C456SER0-0.080-0.05212.955-0.024-0.0240.0000.0000.0000.000
149C457GLY00.0490.01016.129-0.022-0.0220.0000.0000.0000.000
150C458VAL00.0380.04817.993-0.025-0.0250.0000.0000.0000.000
151C459TYR0-0.086-0.05420.742-0.024-0.0240.0000.0000.0000.000
152C460THR0-0.062-0.04918.094-0.007-0.0070.0000.0000.0000.000
153C461PHE00.0130.01321.314-0.006-0.0060.0000.0000.0000.000
154C462LEU00.0360.03623.238-0.009-0.0090.0000.0000.0000.000
155C463SER0-0.0020.00625.5110.0040.0040.0000.0000.0000.000
156C464SER0-0.104-0.06628.041-0.005-0.0050.0000.0000.0000.000
157C465THR00.0300.01430.6230.0050.0050.0000.0000.0000.000
158C466LEU00.0350.00132.4690.0030.0030.0000.0000.0000.000
159C467LYS11.0321.02430.5940.0040.0040.0000.0000.0000.000
160C468SER00.0580.03228.0990.0020.0020.0000.0000.0000.000
161C469LEU0-0.051-0.01229.0270.0080.0080.0000.0000.0000.000
162C470GLU-1-0.879-0.93731.2950.0300.0300.0000.0000.0000.000
163C471GLU-1-0.793-0.91826.2300.0350.0350.0000.0000.0000.000
164C472LYS10.8690.93525.361-0.053-0.0530.0000.0000.0000.000
165C473ASP-1-0.909-0.95127.2110.0720.0720.0000.0000.0000.000
166C474HIS0-0.092-0.02926.0740.0110.0110.0000.0000.0000.000
167C475ILE00.0410.01521.9890.0090.0090.0000.0000.0000.000
168C476HIS00.018-0.00224.5840.0220.0220.0000.0000.0000.000
169C477ARG10.9240.96526.396-0.065-0.0650.0000.0000.0000.000
170C478VAL0-0.030-0.01222.8210.0050.0050.0000.0000.0000.000
171C479LEU00.0100.00520.0420.0180.0180.0000.0000.0000.000
172C480ASP-1-0.893-0.92523.6030.1450.1450.0000.0000.0000.000
173C481LYS10.8870.96025.838-0.120-0.1200.0000.0000.0000.000
174C482ILE00.013-0.00519.7090.0060.0060.0000.0000.0000.000
175C483THR0-0.008-0.00623.1610.0240.0240.0000.0000.0000.000
176C484ASP-1-0.934-0.97424.4680.1410.1410.0000.0000.0000.000
177C485THR0-0.131-0.08423.306-0.007-0.0070.0000.0000.0000.000
178C486LEU00.0420.01719.7000.0030.0030.0000.0000.0000.000
179C487ILE00.0080.01323.5950.0020.0020.0000.0000.0000.000
180C488HIS0-0.072-0.03926.974-0.007-0.0070.0000.0000.0000.000
181C489LEU0-0.014-0.00721.869-0.006-0.0060.0000.0000.0000.000
182C490MET0-0.014-0.00622.842-0.009-0.0090.0000.0000.0000.000
183C491ALA0-0.016-0.00126.811-0.006-0.0060.0000.0000.0000.000
184C492LYS10.8720.95928.689-0.152-0.1520.0000.0000.0000.000
185C493ALA0-0.040-0.01926.867-0.005-0.0050.0000.0000.0000.000
186C494GLY0-0.026-0.01228.993-0.001-0.0010.0000.0000.0000.000
187C495LEU0-0.020-0.01126.1920.0030.0030.0000.0000.0000.000
188C496THR0-0.008-0.00230.893-0.006-0.0060.0000.0000.0000.000
189C497LEU00.0750.01831.8800.0080.0080.0000.0000.0000.000
190C498GLN00.0120.01132.2300.0000.0000.0000.0000.0000.000
191C499GLN0-0.020-0.02229.3170.0080.0080.0000.0000.0000.000
192C500GLN0-0.010-0.00227.7550.0140.0140.0000.0000.0000.000
193C501HIS00.0820.03526.9060.0070.0070.0000.0000.0000.000
194C502GLN0-0.085-0.04126.927-0.002-0.0020.0000.0000.0000.000
195C503ARG10.7810.83220.377-0.334-0.3340.0000.0000.0000.000
196C504LEU00.0460.03422.2640.0290.0290.0000.0000.0000.000
197C505ALA00.0350.02221.8390.0220.0220.0000.0000.0000.000
198C506GLN0-0.074-0.05121.2210.0340.0340.0000.0000.0000.000
199C507LEU0-0.020-0.01017.3650.0370.0370.0000.0000.0000.000
200C508LEU00.0530.01916.9890.0480.0480.0000.0000.0000.000
201C509LEU0-0.019-0.01617.5060.0120.0120.0000.0000.0000.000
202C510ILE0-0.054-0.01912.7660.0070.0070.0000.0000.0000.000
203C511LEU00.0410.01912.9980.0640.0640.0000.0000.0000.000
204C512SER00.0120.01813.0460.0040.0040.0000.0000.0000.000
205C513HIS0-0.015-0.00412.199-0.015-0.0150.0000.0000.0000.000
206C514ILE00.0220.0197.9430.0340.0340.0000.0000.0000.000
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