Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: PZ2YN

Calculation Name: 4QLP-B-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4QLP

Chain ID: B

ChEMBL ID:

UniProt ID: O05442

Base Structure: X-ray

Registration Date: 2018-02-14

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 199
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2240829.546547
FMO2-HF: Nuclear repulsion 2161020.927605
FMO2-HF: Total energy -79808.618942
FMO2-MP2: Total energy -80042.778164


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:648:SER)


Summations of interaction energy for fragment #1(B:648:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-64.016-62.336-0.013-0.73-0.935-0.002
Interaction energy analysis for fragmet #1(B:648:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.812 / q_NPA : 0.892
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B650MET00.0440.0173.781-2.137-0.538-0.012-0.723-0.863-0.002
4B651ARG10.9540.9886.42424.48824.4880.0000.0000.0000.000
5B652LEU0-0.033-0.0128.0651.2211.2210.0000.0000.0000.000
6B653SER0-0.0150.00311.3200.0570.0570.0000.0000.0000.000
7B654ASP-1-0.845-0.90914.367-17.913-17.9130.0000.0000.0000.000
8B655GLU-1-0.924-0.97617.211-14.884-14.8840.0000.0000.0000.000
9B656ALA0-0.041-0.01820.2950.1120.1120.0000.0000.0000.000
10B657VAL0-0.050-0.03122.5540.4100.4100.0000.0000.0000.000
11B658ASP-1-0.903-0.93622.722-13.276-13.2760.0000.0000.0000.000
12B659PRO0-0.017-0.00624.3280.4730.4730.0000.0000.0000.000
13B660GLN0-0.0020.00027.3740.1350.1350.0000.0000.0000.000
14B661TYR00.018-0.00827.2770.0330.0330.0000.0000.0000.000
15B662GLY00.008-0.00129.0430.3820.3820.0000.0000.0000.000
16B663GLU-1-0.982-0.99029.451-9.318-9.3180.0000.0000.0000.000
17B664PRO0-0.068-0.04627.388-0.295-0.2950.0000.0000.0000.000
18B665LEU0-0.0020.01021.956-0.121-0.1210.0000.0000.0000.000
19B666SER0-0.037-0.01319.637-0.089-0.0890.0000.0000.0000.000
20B667ARG10.8350.89114.98218.53618.5360.0000.0000.0000.000
21B668HIS0-0.032-0.01919.3900.0780.0780.0000.0000.0000.000
22B669TRP0-0.076-0.03218.069-0.627-0.6270.0000.0000.0000.000
23B670ASP-1-0.803-0.89819.979-12.652-12.6520.0000.0000.0000.000
24B671PHE0-0.059-0.03322.210-0.361-0.3610.0000.0000.0000.000
25B672THR00.0270.00821.628-0.001-0.0010.0000.0000.0000.000
26B673ASP-1-0.886-0.93924.636-10.847-10.8470.0000.0000.0000.000
27B674ASN00.0680.02428.324-0.230-0.2300.0000.0000.0000.000
28B675PRO0-0.029-0.00728.5440.2260.2260.0000.0000.0000.000
29B676ALA00.0410.01030.5240.1610.1610.0000.0000.0000.000
30B677ASP-1-0.904-0.92333.696-8.422-8.4220.0000.0000.0000.000
31B678ARG10.9930.97535.6087.7457.7450.0000.0000.0000.000
32B679SER0-0.099-0.05737.4540.1100.1100.0000.0000.0000.000
33B680ARG10.8710.92429.03610.10810.1080.0000.0000.0000.000
34B681ILE0-0.0380.01134.217-0.206-0.2060.0000.0000.0000.000
35B682ASN00.017-0.01635.0580.4100.4100.0000.0000.0000.000
36B683PRO0-0.009-0.01636.6750.1230.1230.0000.0000.0000.000
37B684VAL0-0.002-0.00739.5280.1790.1790.0000.0000.0000.000
38B685VAL00.0480.02435.6030.1210.1210.0000.0000.0000.000
39B686ALA0-0.024-0.02138.8780.0850.0850.0000.0000.0000.000
40B687GLN0-0.072-0.03440.6550.2060.2060.0000.0000.0000.000
41B688LEU0-0.0100.01139.6730.1300.1300.0000.0000.0000.000
42B689MET0-0.084-0.02737.819-0.064-0.0640.0000.0000.0000.000
43B690GLU-1-0.910-0.96441.980-6.755-6.7550.0000.0000.0000.000
44B691ASP-1-0.842-0.89641.596-7.307-7.3070.0000.0000.0000.000
45B692PRO0-0.010-0.00741.207-0.205-0.2050.0000.0000.0000.000
46B693ASN0-0.053-0.03541.136-0.150-0.1500.0000.0000.0000.000
47B694ALA0-0.032-0.00939.399-0.046-0.0460.0000.0000.0000.000
48B695PRO0-0.0010.01435.832-0.126-0.1260.0000.0000.0000.000
49B696PHE0-0.038-0.02230.438-0.273-0.2730.0000.0000.0000.000
50B697GLY00.0570.02334.268-0.181-0.1810.0000.0000.0000.000
51B698ARG10.7450.82536.5527.5377.5370.0000.0000.0000.000
52B699ASP-1-0.742-0.85636.520-8.310-8.3100.0000.0000.0000.000
53B700PRO0-0.005-0.01836.2450.2080.2080.0000.0000.0000.000
54B701GLN0-0.039-0.01338.8310.0890.0890.0000.0000.0000.000
55B702GLY00.0030.01141.1740.2060.2060.0000.0000.0000.000
56B703GLN0-0.080-0.03239.7670.2260.2260.0000.0000.0000.000
57B704PRO0-0.005-0.00839.185-0.192-0.1920.0000.0000.0000.000
58B705TYR0-0.018-0.00233.679-0.042-0.0420.0000.0000.0000.000
59B706THR00.0250.00734.1170.0000.0000.0000.0000.0000.000
60B707GLN00.0590.01228.5370.1250.1250.0000.0000.0000.000
61B708GLU-1-0.940-0.96229.086-10.438-10.4380.0000.0000.0000.000
62B709ARG10.8940.92428.9328.6788.6780.0000.0000.0000.000
63B710TYR00.0570.03627.993-0.326-0.3260.0000.0000.0000.000
64B711GLN00.0150.01324.865-0.230-0.2300.0000.0000.0000.000
65B712GLU-1-0.918-0.96724.722-11.864-11.8640.0000.0000.0000.000
66B713ARG10.8730.95425.68510.07410.0740.0000.0000.0000.000
67B714PHE00.000-0.01825.900-0.086-0.0860.0000.0000.0000.000
68B715ASN0-0.0100.00822.0460.3040.3040.0000.0000.0000.000
69B716SER00.0780.03219.907-0.385-0.3850.0000.0000.0000.000
70B717VAL00.0140.00914.189-0.413-0.4130.0000.0000.0000.000
71B718GLY0-0.0150.00314.1950.2570.2570.0000.0000.0000.000
72B719PRO00.032-0.00110.698-1.164-1.1640.0000.0000.0000.000
73B720TRP0-0.085-0.0454.563-3.115-3.034-0.001-0.007-0.0720.000
74B721GLY00.0150.0108.982-1.444-1.4440.0000.0000.0000.000
75B722GLN0-0.0070.00611.5530.4460.4460.0000.0000.0000.000
76B723GLN00.0310.02013.8020.2380.2380.0000.0000.0000.000
77B724TYR0-0.021-0.01414.825-0.006-0.0060.0000.0000.0000.000
78B725SER00.0470.03219.4620.2050.2050.0000.0000.0000.000
79B726ASN0-0.053-0.01822.748-0.375-0.3750.0000.0000.0000.000
80B727PHE00.0150.00722.8760.5200.5200.0000.0000.0000.000
81B728PRO00.0490.03225.938-0.241-0.2410.0000.0000.0000.000
82B729PRO00.0470.01227.165-0.236-0.2360.0000.0000.0000.000
83B730ASN0-0.0170.00228.1330.0900.0900.0000.0000.0000.000
84B731ASN0-0.002-0.00927.6520.2100.2100.0000.0000.0000.000
85B732GLY00.0210.01628.6010.1130.1130.0000.0000.0000.000
86B733ALA00.0340.04530.9920.2730.2730.0000.0000.0000.000
87B734VAL00.0290.01633.899-0.186-0.1860.0000.0000.0000.000
88B735PRO0-0.036-0.02834.2510.0740.0740.0000.0000.0000.000
89B736GLY0-0.021-0.01436.4740.1860.1860.0000.0000.0000.000
90B737THR00.0150.00438.2220.1540.1540.0000.0000.0000.000
91B738ARG10.7960.89431.7469.2849.2840.0000.0000.0000.000
92B739ILE0-0.0020.02038.9560.1200.1200.0000.0000.0000.000
93B740ALA0-0.007-0.00840.383-0.152-0.1520.0000.0000.0000.000
94B741TYR0-0.062-0.04041.8140.1450.1450.0000.0000.0000.000
95B742THR00.024-0.00642.928-0.100-0.1000.0000.0000.0000.000
96B743ASN0-0.020-0.00244.7220.0990.0990.0000.0000.0000.000
97B744LEU00.0860.04044.761-0.031-0.0310.0000.0000.0000.000
98B745GLU-1-0.875-0.94247.075-6.250-6.2500.0000.0000.0000.000
99B746LYS10.9180.96048.9136.0826.0820.0000.0000.0000.000
100B747PHE00.0340.02242.6910.0110.0110.0000.0000.0000.000
101B748LEU0-0.011-0.00647.1720.0180.0180.0000.0000.0000.000
102B749SER0-0.069-0.03549.2300.1090.1090.0000.0000.0000.000
103B750ASP-1-0.900-0.91648.353-6.243-6.2430.0000.0000.0000.000
104B751TYR0-0.037-0.03445.252-0.033-0.0330.0000.0000.0000.000
105B752GLY0-0.0280.00248.092-0.005-0.0050.0000.0000.0000.000
106B753PRO00.013-0.02146.581-0.130-0.1300.0000.0000.0000.000
107B754GLN0-0.025-0.00544.9310.0230.0230.0000.0000.0000.000
108B755LEU00.0200.01139.339-0.041-0.0410.0000.0000.0000.000
109B756ASP-1-0.710-0.83339.301-7.754-7.7540.0000.0000.0000.000
110B757ARG10.8160.91028.7019.8899.8890.0000.0000.0000.000
111B758ILE00.0270.03132.7880.1160.1160.0000.0000.0000.000
112B759GLY00.0380.01930.405-0.276-0.2760.0000.0000.0000.000
113B760GLY0-0.015-0.01229.2210.2480.2480.0000.0000.0000.000
114B761ASP-1-0.857-0.93329.956-10.299-10.2990.0000.0000.0000.000
115B762GLN00.027-0.01224.3500.0050.0050.0000.0000.0000.000
116B763GLY0-0.0240.00126.545-0.272-0.2720.0000.0000.0000.000
117B764LYS10.8940.93725.72311.40611.4060.0000.0000.0000.000
118B765TYR00.0100.01429.5160.1670.1670.0000.0000.0000.000
119B766LEU0-0.019-0.00432.507-0.171-0.1710.0000.0000.0000.000
120B767ALA00.0210.01835.610-0.032-0.0320.0000.0000.0000.000
121B768ILE00.0440.01338.3120.0640.0640.0000.0000.0000.000
122B769MET0-0.069-0.00941.915-0.025-0.0250.0000.0000.0000.000
123B770GLU-1-0.852-0.92944.435-6.773-6.7730.0000.0000.0000.000
124B771HIS0-0.062-0.04546.9820.1180.1180.0000.0000.0000.000
125B772GLY00.0250.01548.2030.1120.1120.0000.0000.0000.000
126B773ARG10.8800.94147.6436.1886.1880.0000.0000.0000.000
127B774PRO0-0.0170.00842.929-0.066-0.0660.0000.0000.0000.000
128B775ALA00.0650.03540.5440.0870.0870.0000.0000.0000.000
129B776SER00.0830.04341.641-0.171-0.1710.0000.0000.0000.000
130B777TRP0-0.007-0.02632.446-0.185-0.1850.0000.0000.0000.000
131B778GLU-1-0.767-0.88937.300-7.961-7.9610.0000.0000.0000.000
132B779GLN00.0540.02238.184-0.160-0.1600.0000.0000.0000.000
133B780ARG10.7300.86735.3608.0108.0100.0000.0000.0000.000
134B781ALA0-0.0290.00333.553-0.232-0.2320.0000.0000.0000.000
135B782LEU0-0.012-0.00231.024-0.343-0.3430.0000.0000.0000.000
136B783HIS00.0480.01625.3770.2640.2640.0000.0000.0000.000
137B784VAL00.0150.00628.7360.1020.1020.0000.0000.0000.000
138B785THR0-0.030-0.04224.8480.1010.1010.0000.0000.0000.000
139B786SER00.0000.01228.090-0.004-0.0040.0000.0000.0000.000
140B787LEU0-0.020-0.00430.3550.3100.3100.0000.0000.0000.000
141B788ARG10.8010.90928.62010.70410.7040.0000.0000.0000.000
142B789ASP-1-0.872-0.91928.927-10.927-10.9270.0000.0000.0000.000
143B790PRO0-0.062-0.02231.0310.3380.3380.0000.0000.0000.000
144B791TYR0-0.029-0.04834.260-0.095-0.0950.0000.0000.0000.000
145B792HIS0-0.032-0.01133.8480.2660.2660.0000.0000.0000.000
146B793ALA00.0180.00038.285-0.054-0.0540.0000.0000.0000.000
147B794TYR0-0.008-0.01635.798-0.154-0.1540.0000.0000.0000.000
148B795THR0-0.039-0.02341.7320.1140.1140.0000.0000.0000.000
149B796ILE0-0.068-0.02741.117-0.148-0.1480.0000.0000.0000.000
150B797ASP-1-0.827-0.91843.545-6.692-6.6920.0000.0000.0000.000
151B798TRP0-0.075-0.04541.8320.1690.1690.0000.0000.0000.000
152B799LEU00.0100.00440.888-0.199-0.1990.0000.0000.0000.000
153B800PRO0-0.049-0.02139.8060.1460.1460.0000.0000.0000.000
154B801GLU-1-0.882-0.94742.717-6.842-6.8420.0000.0000.0000.000
155B802GLY0-0.019-0.01542.028-0.148-0.1480.0000.0000.0000.000
156B803TRP0-0.042-0.01636.402-0.262-0.2620.0000.0000.0000.000
157B804PHE0-0.028-0.01835.8340.2300.2300.0000.0000.0000.000
158B805ILE0-0.017-0.00238.360-0.259-0.2590.0000.0000.0000.000
159B806GLU-1-0.793-0.88634.359-8.910-8.9100.0000.0000.0000.000
160B807VAL00.0270.01237.790-0.142-0.1420.0000.0000.0000.000
161B808SER00.006-0.00835.950-0.016-0.0160.0000.0000.0000.000
162B809GLU-1-0.902-0.94538.588-7.519-7.5190.0000.0000.0000.000
163B810VAL0-0.049-0.00734.499-0.251-0.2510.0000.0000.0000.000
164B811ALA00.013-0.00333.8770.2280.2280.0000.0000.0000.000
165B812PRO00.0190.00435.036-0.121-0.1210.0000.0000.0000.000
166B813GLY00.014-0.00531.770-0.260-0.2600.0000.0000.0000.000
167B814CYS0-0.065-0.03228.2610.0570.0570.0000.0000.0000.000
168B815GLY00.0100.00731.0540.0860.0860.0000.0000.0000.000
169B816GLN00.0130.01334.3930.4710.4710.0000.0000.0000.000
170B817PRO00.007-0.00236.287-0.136-0.1360.0000.0000.0000.000
171B818GLY0-0.0090.01337.477-0.007-0.0070.0000.0000.0000.000
172B819GLY00.018-0.00138.0130.2040.2040.0000.0000.0000.000
173B820SER0-0.040-0.02438.2620.1140.1140.0000.0000.0000.000
174B821ILE00.0560.04239.634-0.129-0.1290.0000.0000.0000.000
175B822GLN0-0.050-0.02932.518-0.050-0.0500.0000.0000.0000.000
176B823VAL00.0200.00336.8190.1120.1120.0000.0000.0000.000
177B824ARG10.7870.86129.2219.4369.4360.0000.0000.0000.000
178B825ILE00.0210.01534.2610.2310.2310.0000.0000.0000.000
179B826PHE0-0.0040.00231.035-0.416-0.4160.0000.0000.0000.000
180B827ASP-1-0.705-0.84233.485-8.918-8.9180.0000.0000.0000.000
181B828HIS00.0390.01036.098-0.028-0.0280.0000.0000.0000.000
182B829GLN0-0.099-0.04833.3180.3360.3360.0000.0000.0000.000
183B830ASN0-0.030-0.01232.235-0.162-0.1620.0000.0000.0000.000
184B831GLU-1-0.947-0.96129.688-10.398-10.3980.0000.0000.0000.000
185B832MET0-0.033-0.00328.1550.1630.1630.0000.0000.0000.000
186B833ARG10.7640.84529.2868.8818.8810.0000.0000.0000.000
187B834LYS10.8690.95426.18511.28511.2850.0000.0000.0000.000
188B835VAL00.0800.02830.0110.2430.2430.0000.0000.0000.000
189B836GLU-1-0.759-0.85730.338-9.726-9.7260.0000.0000.0000.000
190B837GLU-1-0.925-0.94830.352-9.810-9.8100.0000.0000.0000.000
191B838LEU00.013-0.00532.8910.2680.2680.0000.0000.0000.000
192B839ILE00.0100.01434.8200.2480.2480.0000.0000.0000.000
193B840ARG10.7490.85029.79010.06010.0600.0000.0000.0000.000
194B841ARG10.8850.93534.1148.9048.9040.0000.0000.0000.000
195B842GLY00.0530.03338.6750.1950.1950.0000.0000.0000.000
196B843VAL0-0.065-0.01238.7880.1370.1370.0000.0000.0000.000
197B844LEU0-0.024-0.01736.5830.1100.1100.0000.0000.0000.000
198B845ARG10.9010.97440.4406.6306.6300.0000.0000.0000.000
199B846GLN-1-0.865-0.95037.493-7.175-7.1750.0000.0000.0000.000