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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: PZVZN

Calculation Name: 2VQ8-A-Xray17

Preferred Name:

Target Type:

Ligand Name: chloride ion

ligand 3-letter code: CL

PDB ID: 2VQ8

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: X-ray

Registration Date: 2018-06-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandCharge CL-=-1
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1445546.307047
FMO2-HF: Nuclear repulsion 1383925.049574
FMO2-HF: Total energy -61621.257473
FMO2-MP2: Total energy -61791.907104


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:-3:ACE)


Summations of interaction energy for fragment #1(A:-3:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.2732.2090.472-1.198-1.211-0.008
Interaction energy analysis for fragmet #1(A:-3:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.003 / q_NPA : -0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A-1MET00.1050.0593.8440.6861.666-0.012-0.447-0.520-0.001
4A1GLN0-0.0070.0154.8750.4390.498-0.001-0.008-0.0510.000
5A2PRO00.0510.0297.7380.0080.0080.0000.0000.0000.000
6A3GLU-1-0.779-0.89011.127-0.354-0.3540.0000.0000.0000.000
7A4HIS00.0360.02513.900-0.033-0.0330.0000.0000.0000.000
8A5VAL0-0.027-0.00911.0780.0170.0170.0000.0000.0000.000
9A6LYS10.8730.93910.0280.4720.4720.0000.0000.0000.000
10A7GLU-1-0.735-0.84112.294-0.212-0.2120.0000.0000.0000.000
11A8ARG10.9680.96615.4090.0640.0640.0000.0000.0000.000
12A9TYR00.0220.0177.736-0.081-0.0810.0000.0000.0000.000
13A10LYS10.9350.97212.5780.3030.3030.0000.0000.0000.000
14A11ASN0-0.010-0.02613.5830.0260.0260.0000.0000.0000.000
15A12PHE00.0310.03513.1890.0240.0240.0000.0000.0000.000
16A13LEU0-0.071-0.0409.8190.0190.0190.0000.0000.0000.000
17A14ASN0-0.006-0.00214.2330.0080.0080.0000.0000.0000.000
18A15GLN00.0520.03117.4490.0320.0320.0000.0000.0000.000
19A16HIS00.0290.04217.3720.0120.0120.0000.0000.0000.000
20A17VAL0-0.071-0.00612.7490.0190.0190.0000.0000.0000.000
21A18GLY00.0490.01616.070-0.029-0.0290.0000.0000.0000.000
22A19PRO0-0.045-0.01414.5370.0190.0190.0000.0000.0000.000
23A20ASP-1-0.807-0.85517.553-0.084-0.0840.0000.0000.0000.000
24A21MET0-0.0700.01220.308-0.002-0.0020.0000.0000.0000.000
25A22SER00.042-0.00922.6220.0080.0080.0000.0000.0000.000
26A23VAL00.0050.00026.182-0.004-0.0040.0000.0000.0000.000
27A24GLN00.0420.03529.0820.0020.0020.0000.0000.0000.000
28A25ARG10.8860.93023.4180.0680.0680.0000.0000.0000.000
29A86CYS0-0.052-0.00827.319-0.006-0.0060.0000.0000.0000.000
30A27ASN00.0990.06128.203-0.006-0.0060.0000.0000.0000.000
31A28SER00.0320.01528.442-0.007-0.0070.0000.0000.0000.000
32A29GLU-1-0.701-0.80721.578-0.122-0.1220.0000.0000.0000.000
33A30ILE00.004-0.00224.605-0.011-0.0110.0000.0000.0000.000
34A31GLY00.0260.02526.401-0.003-0.0030.0000.0000.0000.000
35A32PRO0-0.023-0.03227.076-0.009-0.0090.0000.0000.0000.000
36A33ASN0-0.0080.00927.816-0.008-0.0080.0000.0000.0000.000
37A34ASN0-0.062-0.03423.536-0.013-0.0130.0000.0000.0000.000
38A35ARG10.7620.87917.6470.1310.1310.0000.0000.0000.000
39A36LYS10.8650.93422.7890.0880.0880.0000.0000.0000.000
40A37ILE0-0.0200.01221.790-0.003-0.0030.0000.0000.0000.000
41A38THR0-0.021-0.00224.7720.0080.0080.0000.0000.0000.000
42A39LEU00.0230.02526.048-0.003-0.0030.0000.0000.0000.000
43A40SER0-0.0050.00425.369-0.003-0.0030.0000.0000.0000.000
44A41GLY00.0290.01227.1740.0060.0060.0000.0000.0000.000
45A42THR0-0.042-0.02829.8320.0040.0040.0000.0000.0000.000
46A43ASP-1-0.771-0.86030.685-0.066-0.0660.0000.0000.0000.000
47A44ASN0-0.060-0.04630.557-0.003-0.0030.0000.0000.0000.000
48A45GLY00.0900.05331.6120.0020.0020.0000.0000.0000.000
49A97CYS0-0.0710.01030.493-0.002-0.0020.0000.0000.0000.000
50A47LYS10.8200.88523.5100.0660.0660.0000.0000.0000.000
51A48PRO00.0740.04529.8430.0010.0010.0000.0000.0000.000
52A49VAL0-0.0070.00627.8990.0020.0020.0000.0000.0000.000
53A50ASN00.0160.00222.468-0.007-0.0070.0000.0000.0000.000
54A51THR0-0.039-0.02722.6080.0010.0010.0000.0000.0000.000
55A52PHE00.0100.01220.179-0.005-0.0050.0000.0000.0000.000
56A53ILE00.0300.00317.1740.0120.0120.0000.0000.0000.000
57A54LEU0-0.063-0.01118.286-0.013-0.0130.0000.0000.0000.000
58A55ALA00.0580.01715.4280.0180.0180.0000.0000.0000.000
59A56ASN00.0540.02911.2920.0130.0130.0000.0000.0000.000
60A57LYS11.0260.9916.5950.9990.9990.0000.0000.0000.000
61A58ARG10.9330.9815.301-0.237-0.2370.0000.0000.0000.000
62A59LEU00.0700.0378.2840.1270.1270.0000.0000.0000.000
63A60ILE00.0580.04311.7790.0260.0260.0000.0000.0000.000
64A61LYS10.8870.9644.326-1.043-1.005-0.001-0.005-0.0310.000
65A62THR0-0.087-0.04710.2030.0310.0310.0000.0000.0000.000
66A63VAL00.0430.02511.805-0.003-0.0030.0000.0000.0000.000
67A112CYS0-0.077-0.02511.588-0.047-0.0470.0000.0000.0000.000
68A65GLY00.0320.02112.8860.0110.0110.0000.0000.0000.000
69A66ARG10.9470.96110.200-0.612-0.6120.0000.0000.0000.000
70A67ALA0-0.036-0.00715.027-0.027-0.0270.0000.0000.0000.000
71A68GLY00.0390.02316.792-0.027-0.0270.0000.0000.0000.000
72A69SER0-0.031-0.09618.4130.0100.0100.0000.0000.0000.000
73A70PRO00.0250.00421.364-0.007-0.0070.0000.0000.0000.000
74A71GLN00.0630.03922.482-0.003-0.0030.0000.0000.0000.000
75A72GLY00.0440.02624.353-0.007-0.0070.0000.0000.0000.000
76A73ASN00.0030.00322.4510.0080.0080.0000.0000.0000.000
77A74MET0-0.0030.01020.339-0.002-0.0020.0000.0000.0000.000
78A75VAL0-0.0270.00316.5540.0100.0100.0000.0000.0000.000
79A76ARG10.9010.93019.988-0.084-0.0840.0000.0000.0000.000
80A77SER0-0.034-0.02819.1150.0090.0090.0000.0000.0000.000
81A78ASN00.0530.00719.900-0.019-0.0190.0000.0000.0000.000
82A79GLN0-0.032-0.02620.545-0.022-0.0220.0000.0000.0000.000
83A80PRO0-0.0110.00921.5250.0020.0020.0000.0000.0000.000
84A81PHE00.011-0.00516.0290.0080.0080.0000.0000.0000.000
85A82PRO0-0.0120.01120.502-0.007-0.0070.0000.0000.0000.000
86A83VAL00.007-0.00221.651-0.004-0.0040.0000.0000.0000.000
87A84VAL0-0.016-0.01823.7000.0020.0020.0000.0000.0000.000
88A85LYS10.8250.93225.196-0.002-0.0020.0000.0000.0000.000
89A87VAL00.020-0.00129.099-0.001-0.0010.0000.0000.0000.000
90A88LEU0-0.045-0.01432.149-0.001-0.0010.0000.0000.0000.000
91A89ASN0-0.089-0.06234.1110.0050.0050.0000.0000.0000.000
92A90ASN00.014-0.00736.8350.0020.0020.0000.0000.0000.000
93A91GLY00.0720.05136.650-0.003-0.0030.0000.0000.0000.000
94A92GLU-1-0.911-0.94537.000-0.034-0.0340.0000.0000.0000.000
95A93ARG10.9730.95834.3030.0430.0430.0000.0000.0000.000
96A94HIS00.0200.02728.4080.0030.0030.0000.0000.0000.000
97A95PRO0-0.0240.02233.4370.0000.0000.0000.0000.0000.000
98A96TYR00.0740.02634.6070.0010.0010.0000.0000.0000.000
99A98GLU-1-0.817-0.88033.405-0.038-0.0380.0000.0000.0000.000
100A99TYR00.000-0.02230.2050.0000.0000.0000.0000.0000.000
101A100ARG10.8910.94833.4090.0180.0180.0000.0000.0000.000
102A101GLY00.0260.01030.379-0.001-0.0010.0000.0000.0000.000
103A102THR0-0.021-0.02530.1580.0030.0030.0000.0000.0000.000
104A103ARG10.9380.96924.425-0.001-0.0010.0000.0000.0000.000
105A104SER0-0.025-0.01627.4130.0030.0030.0000.0000.0000.000
106A105THR00.004-0.00425.3100.0000.0000.0000.0000.0000.000
107A106ARG10.7630.87024.391-0.017-0.0170.0000.0000.0000.000
108A107TYR00.0240.02123.4720.0000.0000.0000.0000.0000.000
109A108ILE0-0.058-0.01417.391-0.010-0.0100.0000.0000.0000.000
110A109VAL00.0180.01020.9300.0130.0130.0000.0000.0000.000
111A110LEU0-0.022-0.01515.130-0.015-0.0150.0000.0000.0000.000
112A111LYS10.8780.94518.369-0.014-0.0140.0000.0000.0000.000
113A113GLU-1-0.870-0.95413.4530.0210.0210.0000.0000.0000.000
114A114GLU-1-0.849-0.90811.3270.1120.1120.0000.0000.0000.000
115A115GLY00.0160.01410.0830.0610.0610.0000.0000.0000.000
116A116TRP0-0.073-0.0483.739-0.0610.0720.001-0.028-0.1070.000
117A117PRO00.0340.0239.793-0.012-0.0120.0000.0000.0000.000
118A118VAL0-0.016-0.02712.855-0.055-0.0550.0000.0000.0000.000
119A119HIS0-0.0060.03815.371-0.024-0.0240.0000.0000.0000.000
120A120TYR00.017-0.00618.3870.0220.0220.0000.0000.0000.000
121A121HIS00.0570.05120.215-0.011-0.0110.0000.0000.0000.000
122A122GLU-1-0.705-0.83223.543-0.022-0.0220.0000.0000.0000.000
123A123ASP-1-0.835-0.89826.2190.0130.0130.0000.0000.0000.000
124A124GLU-1-0.947-0.97629.607-0.003-0.0030.0000.0000.0000.000
125A125VAL0-0.0080.00032.254-0.004-0.0040.0000.0000.0000.000
126A126ASN0-0.022-0.02230.4350.0030.0030.0000.0000.0000.000
127A127NME00.0660.04833.6920.0000.0000.0000.0000.0000.000
128A1127CL--1-0.809-0.77123.7080.0980.0980.0000.0000.0000.000
129A2001HOH0-0.019-0.0322.846-0.4860.2400.485-0.710-0.502-0.007
130A2005HOH0-0.072-0.05810.173-0.016-0.0160.0000.0000.0000.000
131A2012HOH0-0.002-0.00616.285-0.009-0.0090.0000.0000.0000.000
132A2015HOH0-0.031-0.01918.131-0.013-0.0130.0000.0000.0000.000
133A2016HOH0-0.050-0.03220.0010.0030.0030.0000.0000.0000.000
134A2017HOH0-0.022-0.01419.877-0.007-0.0070.0000.0000.0000.000
135A2018HOH0-0.072-0.06416.6910.0010.0010.0000.0000.0000.000
136A2019HOH00.0180.0025.7430.0520.0520.0000.0000.0000.000
137A2020HOH00.0170.0156.565-0.088-0.0880.0000.0000.0000.000
138A2021HOH00.0380.02615.2220.0100.0100.0000.0000.0000.000
139A2022HOH0-0.033-0.02614.685-0.024-0.0240.0000.0000.0000.000
140A2025HOH0-0.012-0.01120.311-0.003-0.0030.0000.0000.0000.000
141A2029HOH0-0.013-0.01819.869-0.007-0.0070.0000.0000.0000.000
142A2030HOH0-0.016-0.01617.559-0.006-0.0060.0000.0000.0000.000
143A2034HOH00.010-0.01620.5400.0050.0050.0000.0000.0000.000
144A2036HOH0-0.018-0.00814.741-0.012-0.0120.0000.0000.0000.000
145A2040HOH00.0250.00418.1900.0020.0020.0000.0000.0000.000
146A2041HOH0-0.032-0.03920.3880.0010.0010.0000.0000.0000.000
147A2043HOH0-0.061-0.04616.7210.0050.0050.0000.0000.0000.000
148A2045HOH0-0.066-0.04921.3190.0040.0040.0000.0000.0000.000
149A2046HOH00.000-0.01430.759-0.002-0.0020.0000.0000.0000.000
150A2048HOH0-0.024-0.00425.3050.0030.0030.0000.0000.0000.000
151A2055HOH00.0110.00028.442-0.001-0.0010.0000.0000.0000.000
152A2056HOH00.0130.00320.9370.0030.0030.0000.0000.0000.000
153A2057HOH0-0.041-0.02822.954-0.001-0.0010.0000.0000.0000.000
154A2058HOH0-0.051-0.04020.510-0.008-0.0080.0000.0000.0000.000
155A2060HOH0-0.027-0.02027.0100.0010.0010.0000.0000.0000.000
156A2063HOH0-0.037-0.01822.649-0.004-0.0040.0000.0000.0000.000
157A2064HOH00.0390.02827.5330.0010.0010.0000.0000.0000.000
158A2065HOH0-0.004-0.00328.0230.0020.0020.0000.0000.0000.000
159A2066HOH0-0.008-0.00724.014-0.003-0.0030.0000.0000.0000.000
160A2067HOH00.0280.01823.276-0.002-0.0020.0000.0000.0000.000
161A2068HOH00.0490.02825.3020.0010.0010.0000.0000.0000.000
162A2069HOH0-0.019-0.01327.3630.0000.0000.0000.0000.0000.000
163A2071HOH0-0.057-0.04635.7730.0010.0010.0000.0000.0000.000
164A2072HOH0-0.063-0.04433.927-0.001-0.0010.0000.0000.0000.000
165A2073HOH0-0.025-0.01733.8750.0000.0000.0000.0000.0000.000
166A2074HOH0-0.019-0.01733.4660.0010.0010.0000.0000.0000.000
167A2075HOH00.0130.00828.329-0.001-0.0010.0000.0000.0000.000
168A2077HOH0-0.006-0.00625.8760.0020.0020.0000.0000.0000.000
169A2078HOH0-0.029-0.02118.1490.0060.0060.0000.0000.0000.000
170A2079HOH0-0.034-0.02120.2420.0030.0030.0000.0000.0000.000
171A2083HOH00.0470.02611.7940.0080.0080.0000.0000.0000.000
172A2084HOH0-0.033-0.0277.5460.1250.1250.0000.0000.0000.000
173A2087HOH0-0.014-0.01813.8660.0150.0150.0000.0000.0000.000
174A2088HOH00.0070.00914.699-0.007-0.0070.0000.0000.0000.000
175A2089HOH0-0.040-0.03316.651-0.006-0.0060.0000.0000.0000.000
176A2090HOH0-0.027-0.01417.5110.0030.0030.0000.0000.0000.000
177A2092HOH00.0370.02814.7900.0220.0220.0000.0000.0000.000
178A2093HOH00.003-0.00718.219-0.007-0.0070.0000.0000.0000.000
179A2095HOH0-0.030-0.02024.462-0.005-0.0050.0000.0000.0000.000
180A2098HOH0-0.046-0.03925.981-0.003-0.0030.0000.0000.0000.000
181A2099HOH00.0160.00927.2250.0000.0000.0000.0000.0000.000
182A2100HOH0-0.006-0.01127.248-0.002-0.0020.0000.0000.0000.000
183A2101HOH0-0.012-0.01224.5780.0000.0000.0000.0000.0000.000
184A2102HOH00.0170.01226.301-0.003-0.0030.0000.0000.0000.000
185A2103HOH0-0.028-0.02724.483-0.003-0.0030.0000.0000.0000.000
186A2104HOH00.016-0.00318.113-0.003-0.0030.0000.0000.0000.000
187A2105HOH00.0310.02022.857-0.002-0.0020.0000.0000.0000.000
188A2106HOH0-0.035-0.02320.5830.0050.0050.0000.0000.0000.000
189A2107HOH00.0660.05819.117-0.003-0.0030.0000.0000.0000.000
190A2108HOH0-0.021-0.01819.453-0.002-0.0020.0000.0000.0000.000
191A2109HOH0-0.025-0.01220.7960.0080.0080.0000.0000.0000.000
192A2110HOH0-0.003-0.01930.235-0.002-0.0020.0000.0000.0000.000
193A2111HOH0-0.030-0.02037.590-0.001-0.0010.0000.0000.0000.000
194A2112HOH00.0690.05041.2580.0000.0000.0000.0000.0000.000
195A2114HOH0-0.028-0.02341.9950.0000.0000.0000.0000.0000.000
196A2115HOH00.0100.00136.9310.0000.0000.0000.0000.0000.000
197A2117HOH0-0.072-0.04835.3150.0000.0000.0000.0000.0000.000
198A2118HOH00.0110.02339.480-0.001-0.0010.0000.0000.0000.000
199A2119HOH00.0010.00134.915-0.002-0.0020.0000.0000.0000.000
200A2120HOH0-0.017-0.02731.7010.0010.0010.0000.0000.0000.000
201A2121HOH0-0.038-0.04536.6320.0000.0000.0000.0000.0000.000
202A2122HOH0-0.021-0.01633.483-0.002-0.0020.0000.0000.0000.000
203A2124HOH0-0.008-0.01442.3920.0000.0000.0000.0000.0000.000
204A2125HOH0-0.016-0.01938.3430.0010.0010.0000.0000.0000.000
205A2126HOH0-0.028-0.02030.609-0.001-0.0010.0000.0000.0000.000
206A2127HOH0-0.055-0.03534.2250.0000.0000.0000.0000.0000.000
207A2128HOH0-0.060-0.04540.5270.0010.0010.0000.0000.0000.000
208A2129HOH0-0.0070.00340.6650.0010.0010.0000.0000.0000.000
209A2130HOH00.0000.00037.095-0.001-0.0010.0000.0000.0000.000
210A2131HOH00.0150.00235.358-0.001-0.0010.0000.0000.0000.000
211A2132HOH00.0290.01843.8660.0000.0000.0000.0000.0000.000
212A2133HOH00.0310.01933.689-0.001-0.0010.0000.0000.0000.000
213A2135HOH00.0050.01132.3760.0010.0010.0000.0000.0000.000
214A2137HOH00.0480.02932.3020.0000.0000.0000.0000.0000.000
215A2138HOH00.0280.02228.6580.0020.0020.0000.0000.0000.000
216A2139HOH00.0390.02428.862-0.001-0.0010.0000.0000.0000.000
217A2140HOH00.0340.01930.6060.0000.0000.0000.0000.0000.000
218A2142HOH00.0090.00527.7960.0000.0000.0000.0000.0000.000
219A2143HOH00.0120.02818.494-0.004-0.0040.0000.0000.0000.000
220A2144HOH0-0.024-0.02011.1970.0020.0020.0000.0000.0000.000
221A2145HOH0-0.036-0.0299.6710.0530.0530.0000.0000.0000.000
222A2146HOH0-0.002-0.01314.3240.0050.0050.0000.0000.0000.000
223A2148HOH0-0.008-0.0108.8210.0040.0040.0000.0000.0000.000
224A2149HOH00.0280.01218.6800.0020.0020.0000.0000.0000.000
225A2150HOH0-0.022-0.03121.514-0.005-0.0050.0000.0000.0000.000
226A2151HOH0-0.014-0.00422.7300.0000.0000.0000.0000.0000.000
227A2152HOH00.0240.01123.4090.0040.0040.0000.0000.0000.000
228A2153HOH00.015-0.01325.622-0.002-0.0020.0000.0000.0000.000
229A2154HOH0-0.012-0.00525.1710.0020.0020.0000.0000.0000.000
230A2155HOH0-0.030-0.02924.133-0.004-0.0040.0000.0000.0000.000
231A2156HOH0-0.033-0.02029.696-0.002-0.0020.0000.0000.0000.000
232A2157HOH00.0580.04331.024-0.001-0.0010.0000.0000.0000.000
233A2158HOH00.0320.01033.147-0.001-0.0010.0000.0000.0000.000
234A2159HOH0-0.027-0.02633.3200.0000.0000.0000.0000.0000.000