FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: Q138Y

Calculation Name: 4NUX-A-Xray372

Preferred Name: Interleukin-17 receptor A

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 4NUX

Chain ID: A

ChEMBL ID: CHEMBL3580485

UniProt ID: Q96F46

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 201
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2442793.750876
FMO2-HF: Nuclear repulsion 2360337.272776
FMO2-HF: Total energy -82456.4781
FMO2-MP2: Total energy -82691.476969


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:376:LYS)


Summations of interaction energy for fragment #1(A:376:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-91.981-89.8820.032-1.106-1.0240.001
Interaction energy analysis for fragmet #1(A:376:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.969 / q_NPA : 0.976
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A378ARG10.8410.9193.36822.87824.9770.032-1.106-1.0240.001
4A379LYS10.9020.9495.49333.66833.6680.0000.0000.0000.000
5A380VAL0-0.001-0.0047.2171.3661.3660.0000.0000.0000.000
6A381TRP00.0380.01810.995-0.046-0.0460.0000.0000.0000.000
7A382ILE0-0.021-0.01514.0720.5970.5970.0000.0000.0000.000
8A383ILE0-0.0100.01417.5110.4430.4430.0000.0000.0000.000
9A384TYR0-0.043-0.05420.7390.5300.5300.0000.0000.0000.000
10A385SER00.002-0.01423.8370.0050.0050.0000.0000.0000.000
11A386ALA00.0540.02527.1860.0520.0520.0000.0000.0000.000
12A387ASP-1-0.765-0.86328.298-9.773-9.7730.0000.0000.0000.000
13A388HIS00.0800.03630.7670.1650.1650.0000.0000.0000.000
14A389PRO00.0180.00930.493-0.350-0.3500.0000.0000.0000.000
15A390LEU0-0.041-0.01829.695-0.265-0.2650.0000.0000.0000.000
16A391TYR0-0.0150.01126.385-0.269-0.2690.0000.0000.0000.000
17A392VAL00.0280.00925.441-0.426-0.4260.0000.0000.0000.000
18A393ASP-1-0.828-0.90324.759-11.503-11.5030.0000.0000.0000.000
19A394VAL00.0010.00424.724-0.378-0.3780.0000.0000.0000.000
20A395VAL00.0090.00820.968-0.472-0.4720.0000.0000.0000.000
21A396LEU0-0.0010.01020.027-0.761-0.7610.0000.0000.0000.000
22A397LYS10.7750.87720.08310.76710.7670.0000.0000.0000.000
23A398PHE00.0210.01118.426-0.378-0.3780.0000.0000.0000.000
24A399ALA00.0310.01716.300-0.666-0.6660.0000.0000.0000.000
25A400GLN0-0.016-0.01415.497-0.490-0.4900.0000.0000.0000.000
26A401PHE0-0.007-0.00616.314-0.495-0.4950.0000.0000.0000.000
27A402LEU00.0200.00713.423-0.331-0.3310.0000.0000.0000.000
28A403LEU00.0160.02410.228-1.097-1.0970.0000.0000.0000.000
29A404THR0-0.076-0.06812.581-0.351-0.3510.0000.0000.0000.000
30A405ALA0-0.069-0.03415.3110.4930.4930.0000.0000.0000.000
31A406CYS0-0.051-0.01513.4230.4910.4910.0000.0000.0000.000
32A407GLY00.0070.0269.803-1.169-1.1690.0000.0000.0000.000
33A408THR0-0.072-0.0468.073-2.895-2.8950.0000.0000.0000.000
34A409GLU-1-0.873-0.9385.376-36.149-36.1490.0000.0000.0000.000
35A410VAL0-0.026-0.0278.784-0.215-0.2150.0000.0000.0000.000
36A411ALA0-0.0060.02211.9150.4070.4070.0000.0000.0000.000
37A412LEU0-0.003-0.03113.2040.9100.9100.0000.0000.0000.000
38A413ASP-1-0.750-0.85316.940-13.988-13.9880.0000.0000.0000.000
39A414LEU0-0.025-0.02320.1180.1710.1710.0000.0000.0000.000
40A415LEU0-0.067-0.02915.5330.3990.3990.0000.0000.0000.000
41A416GLU-1-0.810-0.90815.120-20.618-20.6180.0000.0000.0000.000
42A417GLU-1-0.850-0.94019.066-12.283-12.2830.0000.0000.0000.000
43A418GLN0-0.056-0.02521.6730.5850.5850.0000.0000.0000.000
44A419ALA00.0320.00818.2260.2510.2510.0000.0000.0000.000
45A420ILE0-0.055-0.01820.2760.0420.0420.0000.0000.0000.000
46A421SER0-0.057-0.04222.2150.7090.7090.0000.0000.0000.000
47A422GLU-1-0.937-0.94621.925-13.493-13.4930.0000.0000.0000.000
48A423ALA0-0.049-0.02720.4010.1380.1380.0000.0000.0000.000
49A424GLY00.0310.02322.293-0.172-0.1720.0000.0000.0000.000
50A425VAL00.0640.02122.729-0.587-0.5870.0000.0000.0000.000
51A426MET0-0.001-0.00322.394-0.506-0.5060.0000.0000.0000.000
52A427THR0-0.0050.00119.386-0.247-0.2470.0000.0000.0000.000
53A428TRP0-0.046-0.03816.854-0.559-0.5590.0000.0000.0000.000
54A429VAL00.0300.01117.387-0.976-0.9760.0000.0000.0000.000
55A430GLY0-0.026-0.01218.110-0.501-0.5010.0000.0000.0000.000
56A431ARG10.9510.98112.82919.23619.2360.0000.0000.0000.000
57A432GLN00.0400.01813.132-2.575-2.5750.0000.0000.0000.000
58A433LYS10.7710.86613.64614.72614.7260.0000.0000.0000.000
59A434GLN0-0.100-0.05911.9320.8760.8760.0000.0000.0000.000
60A435GLU-1-0.879-0.9519.068-29.779-29.7790.0000.0000.0000.000
61A436MET0-0.057-0.0018.881-3.721-3.7210.0000.0000.0000.000
62A437VAL0-0.015-0.01410.794-0.853-0.8530.0000.0000.0000.000
63A438GLU-1-0.923-0.9458.144-29.857-29.8570.0000.0000.0000.000
64A439SER0-0.057-0.0426.161-2.980-2.9800.0000.0000.0000.000
65A440ASN0-0.058-0.0167.7870.1440.1440.0000.0000.0000.000
66A441SER00.0080.0187.6150.9430.9430.0000.0000.0000.000
67A442LYS10.7600.8729.94024.88724.8870.0000.0000.0000.000
68A443ILE00.008-0.00113.091-0.520-0.5200.0000.0000.0000.000
69A444ILE0-0.009-0.00215.3270.9500.9500.0000.0000.0000.000
70A445VAL0-0.007-0.01018.0370.0440.0440.0000.0000.0000.000
71A446LEU0-0.0120.00920.5510.4660.4660.0000.0000.0000.000
72A447CYS0-0.059-0.03423.5180.2380.2380.0000.0000.0000.000
73A448SER00.015-0.03727.209-0.086-0.0860.0000.0000.0000.000
74A449ARG10.8340.91430.2398.3198.3190.0000.0000.0000.000
75A450GLY00.010-0.00632.1500.2820.2820.0000.0000.0000.000
76A451THR0-0.025-0.00527.125-0.024-0.0240.0000.0000.0000.000
77A452ARG10.8320.90830.3698.7328.7320.0000.0000.0000.000
78A453ALA0-0.050-0.01933.5790.1520.1520.0000.0000.0000.000
79A454LYS10.8190.87729.59910.60510.6050.0000.0000.0000.000
80A455TRP0-0.007-0.01331.092-0.152-0.1520.0000.0000.0000.000
81A456GLN00.027-0.00432.9880.2750.2750.0000.0000.0000.000
82A457ALA0-0.029-0.00235.7250.1930.1930.0000.0000.0000.000
83A458LEU0-0.029-0.01030.5860.1150.1150.0000.0000.0000.000
84A459LEU0-0.052-0.01234.8730.0980.0980.0000.0000.0000.000
85A460GLY0-0.019-0.00337.1180.2380.2380.0000.0000.0000.000
86A461ARG10.8590.91539.7108.1358.1350.0000.0000.0000.000
87A462GLY00.0140.01040.1640.0990.0990.0000.0000.0000.000
88A463ALA0-0.017-0.00340.762-0.030-0.0300.0000.0000.0000.000
89A464PRO00.009-0.00938.137-0.184-0.1840.0000.0000.0000.000
90A465VAL0-0.0130.00334.4690.1380.1380.0000.0000.0000.000
91A466ARG10.8720.93435.5188.1488.1480.0000.0000.0000.000
92A467LEU00.0280.02431.6240.2550.2550.0000.0000.0000.000
93A468ARG10.8370.91234.5097.7587.7580.0000.0000.0000.000
94A469CYS0-0.018-0.00429.995-0.111-0.1110.0000.0000.0000.000
95A470ASP-1-0.826-0.88429.509-10.844-10.8440.0000.0000.0000.000
96A471HIS00.041-0.00130.996-0.050-0.0500.0000.0000.0000.000
97A472GLY0-0.0020.01333.7470.3460.3460.0000.0000.0000.000
98A473LYS10.8210.92727.18211.32711.3270.0000.0000.0000.000
99A474PRO00.002-0.01230.6160.0260.0260.0000.0000.0000.000
100A475VAL00.0050.02525.9390.0920.0920.0000.0000.0000.000
101A476GLY00.0270.00728.121-0.071-0.0710.0000.0000.0000.000
102A477ASP-1-0.803-0.89328.553-10.846-10.8460.0000.0000.0000.000
103A478LEU00.0670.03122.055-0.065-0.0650.0000.0000.0000.000
104A479PHE0-0.0090.01824.484-0.351-0.3510.0000.0000.0000.000
105A480THR00.011-0.03726.167-0.178-0.1780.0000.0000.0000.000
106A481ALA0-0.0100.00725.081-0.020-0.0200.0000.0000.0000.000
107A482ALA00.0390.00521.850-0.258-0.2580.0000.0000.0000.000
108A483MET0-0.025-0.00523.349-0.353-0.3530.0000.0000.0000.000
109A484ASN0-0.063-0.04826.0080.2010.2010.0000.0000.0000.000
110A485MET0-0.0200.01520.3120.0450.0450.0000.0000.0000.000
111A486ILE00.0100.00720.412-0.431-0.4310.0000.0000.0000.000
112A487LEU00.0050.02122.8750.0810.0810.0000.0000.0000.000
113A488PRO0-0.050-0.04223.7140.3400.3400.0000.0000.0000.000
114A489ASP-1-0.717-0.82620.222-15.191-15.1910.0000.0000.0000.000
115A490PHE00.0570.02323.0660.0170.0170.0000.0000.0000.000
116A491LYS10.9340.97726.59311.11311.1130.0000.0000.0000.000
117A492ARG10.8440.91123.56212.50012.5000.0000.0000.0000.000
118A493PRO00.0680.02423.880-0.558-0.5580.0000.0000.0000.000
119A494ALA00.0030.00820.793-0.217-0.2170.0000.0000.0000.000
120A495CYS00.0020.00119.235-0.553-0.5530.0000.0000.0000.000
121A496PHE0-0.0160.00019.935-0.307-0.3070.0000.0000.0000.000
122A497GLY00.0320.02318.4420.0270.0270.0000.0000.0000.000
123A498THR00.0290.02015.006-0.662-0.6620.0000.0000.0000.000
124A499TYR0-0.042-0.03916.501-0.552-0.5520.0000.0000.0000.000
125A500VAL0-0.003-0.00416.5710.6420.6420.0000.0000.0000.000
126A501VAL00.0410.03519.706-0.010-0.0100.0000.0000.0000.000
127A502CYS0-0.020-0.00821.1890.1140.1140.0000.0000.0000.000
128A503TYR00.003-0.02324.0450.1940.1940.0000.0000.0000.000
129A504PHE00.0410.01222.530-0.039-0.0390.0000.0000.0000.000
130A505SER0-0.028-0.03427.7420.2770.2770.0000.0000.0000.000
131A506GLU-1-0.878-0.93830.640-8.996-8.9960.0000.0000.0000.000
132A507VAL0-0.049-0.02329.9380.2080.2080.0000.0000.0000.000
133A508SER0-0.0160.00129.2250.1250.1250.0000.0000.0000.000
134A509CYS0-0.094-0.03931.9500.1270.1270.0000.0000.0000.000
135A510ASP-1-0.742-0.85831.231-10.020-10.0200.0000.0000.0000.000
136A511GLY00.0440.01932.454-0.096-0.0960.0000.0000.0000.000
137A512ASP-1-0.766-0.87931.328-9.008-9.0080.0000.0000.0000.000
138A513VAL0-0.023-0.00727.946-0.295-0.2950.0000.0000.0000.000
139A514PRO0-0.021-0.01228.2270.2860.2860.0000.0000.0000.000
140A515ASP-1-0.852-0.91630.140-9.481-9.4810.0000.0000.0000.000
141A516LEU0-0.0270.00227.214-0.016-0.0160.0000.0000.0000.000
142A517PHE00.012-0.00925.377-0.257-0.2570.0000.0000.0000.000
143A518GLY0-0.009-0.00428.196-0.106-0.1060.0000.0000.0000.000
144A519ALA0-0.020-0.01330.6310.0770.0770.0000.0000.0000.000
145A520ALA0-0.0090.00824.914-0.141-0.1410.0000.0000.0000.000
146A521PRO0-0.027-0.01023.5120.3240.3240.0000.0000.0000.000
147A522ARG10.8560.91524.8599.7259.7250.0000.0000.0000.000
148A523TYR00.022-0.00621.806-0.047-0.0470.0000.0000.0000.000
149A524PRO00.0220.01825.264-0.182-0.1820.0000.0000.0000.000
150A525LEU0-0.0430.00221.729-0.342-0.3420.0000.0000.0000.000
151A526MET00.030-0.01321.1270.2310.2310.0000.0000.0000.000
152A527ASP-1-0.881-0.91825.198-10.260-10.2600.0000.0000.0000.000
153A528ARG10.8740.92425.09410.64910.6490.0000.0000.0000.000
154A529PHE00.027-0.01016.818-0.455-0.4550.0000.0000.0000.000
155A530GLU-1-0.945-0.96119.838-12.829-12.8290.0000.0000.0000.000
156A531GLU-1-0.801-0.89519.665-12.223-12.2230.0000.0000.0000.000
157A532VAL0-0.025-0.01417.349-0.600-0.6000.0000.0000.0000.000
158A533TYR0-0.023-0.01213.724-1.132-1.1320.0000.0000.0000.000
159A534PHE00.0470.00914.798-1.247-1.2470.0000.0000.0000.000
160A535ARG10.8580.91915.09714.74314.7430.0000.0000.0000.000
161A536ILE0-0.041-0.02210.885-1.059-1.0590.0000.0000.0000.000
162A537GLN0-0.022-0.01910.100-3.470-3.4700.0000.0000.0000.000
163A538ASP-1-0.850-0.88210.601-25.508-25.5080.0000.0000.0000.000
164A539LEU0-0.041-0.01613.0890.1660.1660.0000.0000.0000.000
165A540GLU-1-0.961-0.97515.840-12.459-12.4590.0000.0000.0000.000
166A556ASP-1-0.731-0.85928.918-9.843-9.8430.0000.0000.0000.000
167A557ASN00.024-0.00325.336-0.078-0.0780.0000.0000.0000.000
168A558TYR00.0550.04822.649-0.135-0.1350.0000.0000.0000.000
169A559LEU00.0000.01423.882-0.268-0.2680.0000.0000.0000.000
170A560ARG10.8550.91823.93711.40211.4020.0000.0000.0000.000
171A561SER00.0340.03219.8520.0470.0470.0000.0000.0000.000
172A562PRO00.0320.00818.3980.4160.4160.0000.0000.0000.000
173A563GLY00.0710.04819.263-0.639-0.6390.0000.0000.0000.000
174A564GLY00.0230.01621.3680.2040.2040.0000.0000.0000.000
175A565ARG10.8890.92723.49610.15610.1560.0000.0000.0000.000
176A566GLN00.0260.01123.8170.2650.2650.0000.0000.0000.000
177A567LEU00.0190.01021.8230.2160.2160.0000.0000.0000.000
178A568ARG10.8210.88325.0829.7429.7420.0000.0000.0000.000
179A569ALA00.0130.00528.3740.2730.2730.0000.0000.0000.000
180A570ALA0-0.032-0.01527.1610.2860.2860.0000.0000.0000.000
181A571LEU0-0.007-0.00126.3540.1810.1810.0000.0000.0000.000
182A572ASP-1-0.763-0.86530.043-8.603-8.6030.0000.0000.0000.000
183A573ARG10.9240.97032.1939.2259.2250.0000.0000.0000.000
184A574PHE0-0.020-0.01730.6550.2390.2390.0000.0000.0000.000
185A575ARG10.7970.86033.5698.5018.5010.0000.0000.0000.000
186A576ASP-1-0.814-0.89635.531-7.606-7.6060.0000.0000.0000.000
187A577TRP0-0.041-0.03036.5760.3110.3110.0000.0000.0000.000
188A578GLN0-0.019-0.02934.0530.2430.2430.0000.0000.0000.000
189A579VAL0-0.021-0.00738.5780.1840.1840.0000.0000.0000.000
190A580ARG10.8310.92341.0327.3807.3800.0000.0000.0000.000
191A581CYS0-0.071-0.01840.8470.1860.1860.0000.0000.0000.000
192A582PRO00.0670.04141.043-0.211-0.2110.0000.0000.0000.000
193A583ASP-1-0.896-0.94241.295-7.052-7.0520.0000.0000.0000.000
194A584TRP0-0.003-0.01833.260-0.209-0.2090.0000.0000.0000.000
195A585PHE0-0.0090.00733.589-0.128-0.1280.0000.0000.0000.000
196A586GLU-1-0.805-0.91437.757-7.904-7.9040.0000.0000.0000.000
197A587CYS0-0.045-0.00840.7210.1450.1450.0000.0000.0000.000
198A588GLU-1-0.809-0.92534.755-8.812-8.8120.0000.0000.0000.000
199A589ASN00.0200.01737.425-0.341-0.3410.0000.0000.0000.000
200A590LEU0-0.038-0.01138.1000.2490.2490.0000.0000.0000.000
201A591TYR0-0.012-0.00140.805-0.059-0.0590.0000.0000.0000.000