FMODB: The database of quantum mechanical data based on the FMO method
Last updated: 2024-07-23
All entries: 37478
Number of unique PDB entries: 7783
FMODB ID: Q8L4Y
Calculation Name: 1L2Y-A-MD57-80900ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Apendix: None
Modeling method
| Optimization | BaseStructure_original |
|---|---|
| Restraint | BaseStructure_original |
| Protonation | BaseStructure_original |
| Complement | No |
| Water | No |
| Procedure | Manual calculation |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 10 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -23983.551723 |
|---|---|
| FMO2-HF: Nuclear repulsion | 19381.301741 |
| FMO2-HF: Total energy | -4602.249983 |
| FMO2-MP2: Total energy | -4615.682888 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -114.99 | -110.909 | 29.109 | -14.876 | -18.313 | -0.153 |
Interaction energy analysis for fragmet #1(:1:GLN )
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 3 | GLN | 0 | 0.089 | 0.035 | 2.708 | -6.976 | -4.300 | 0.527 | -1.339 | -1.864 | -0.009 | |
| 4 | 4 | GLN | 0 | 0.004 | -0.002 | 5.159 | 3.340 | 3.460 | -0.001 | -0.003 | -0.115 | 0.000 | |
| 5 | 5 | GLN | 0 | -0.043 | -0.026 | 6.730 | -1.998 | -1.998 | 0.000 | 0.000 | 0.000 | 0.000 | |
| 6 | 6 | GLN | 0 | 0.014 | 0.017 | 2.385 | -4.955 | -3.501 | 0.832 | -0.592 | -1.694 | 0.002 | |
| 7 | 7 | GLN | 0 | 0.063 | 0.057 | 1.724 | -22.131 | -27.159 | 16.473 | -6.537 | -4.909 | -0.071 | |
| 8 | 8 | GLN | 0 | 0.016 | -0.015 | 2.088 | -48.121 | -43.370 | 11.219 | -6.525 | -9.444 | -0.075 | |
| 9 | 9 | GLN | 0 | -0.045 | -0.028 | 3.360 | 3.067 | 3.175 | 0.059 | 0.120 | -0.287 | 0.000 | |
| 10 | 10 | GLN | -1 | -0.878 | -0.912 | 6.174 | -37.216 | -37.216 | 0.000 | 0.000 | 0.000 | 0.000 |