FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-25

All entries: 37426

Number of unique PDB entries: 7782

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FMODB ID: Q8Z3Y

Calculation Name: 6A84-A-Docking63-cpd15c

Preferred Name:

Target Type:

Ligand Name: 2-(4-chloro-1,2-dihydro-1'h-spiro[indole-3,4'-piperidin]-1'-yl)-5,6,7,8-tetrahydroquinazolin-4(3h)-one

ligand 3-letter code: 9SU

PDB ID: 6A84

Chain ID: A

ChEMBL ID:

UniProt ID:

Base Structure: Docking

Registration Date: 2019-08-23

Reference:

DOI: 10.1021/acs.jmedchem.8b01888


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHL
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 212
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2641441.818635
FMO2-HF: Nuclear repulsion 2555133.965651
FMO2-HF: Total energy -86307.852984
FMO2-MP2: Total energy -86556.116275


3D Structure
Snapshot
 
Ligand structure

056

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-122.951-74.85662.718-31.710-79.1000.019


Interactive mode: IFIE and PIEDA for fragment #212(A:1163:056 )


Summations of interaction energy for fragment #212(A:1163:056 )
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-122.951-74.85662.718-31.71-79.1-0.019
Interaction energy analysis for fragmet #212(A:1163:056 )
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.019 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A952GLY 10.8180.88620.5820.2800.2800.0000.0000.0000.000
2A953THR 00.0680.01016.681-0.018-0.0180.0000.0000.0000.000
3A954ILE 00.0080.02619.7850.0030.0030.0000.0000.0000.000
4A955LEU 0-0.005-0.00116.5030.0060.0060.0000.0000.0000.000
5A956ILE 0-0.006-0.00120.467-0.016-0.0160.0000.0000.0000.000
6A957ASP -1-0.851-0.93420.9630.4560.4560.0000.0000.0000.000
7A958LEU 0-0.023-0.00519.038-0.038-0.0380.0000.0000.0000.000
8A959SER 00.0190.01222.5080.0310.0310.0000.0000.0000.000
9A960PRO 00.0640.01723.3460.0170.0170.0000.0000.0000.000
10A961ASP -1-0.905-0.94624.3680.3810.3810.0000.0000.0000.000
11A962ASP -1-0.931-0.95924.2050.3780.3780.0000.0000.0000.000
12A963LYS 10.9720.96624.180-0.308-0.3080.0000.0000.0000.000
13A964GLU -1-0.775-0.83220.0130.5270.5270.0000.0000.0000.000
14A965PHE 0-0.0080.00119.7080.1000.1000.0000.0000.0000.000
15A966GLN 00.000-0.01419.2130.0980.0980.0000.0000.0000.000
16A967SER 0-0.0060.00818.6930.0290.0290.0000.0000.0000.000
17A968VAL 0-0.016-0.00314.0210.1010.1010.0000.0000.0000.000
18A969GLU -1-0.893-0.94815.0011.1351.1350.0000.0000.0000.000
19A970GLU -1-0.881-0.95716.1170.9730.9730.0000.0000.0000.000
20A971GLU -1-0.934-0.94712.6571.1611.1610.0000.0000.0000.000
21A972MET 0-0.093-0.03510.3300.4620.4620.0000.0000.0000.000
22A973GLN 0-0.011-0.03012.3730.2500.2500.0000.0000.0000.000
23A974SER 0-0.0020.01514.9150.0160.0160.0000.0000.0000.000
24A975THR 0-0.0250.00210.2130.1360.1360.0000.0000.0000.000
25A976VAL 0-0.031-0.01110.0010.3950.3950.0000.0000.0000.000
26A977ARG 10.8410.9326.479-1.056-1.0560.0000.0000.0000.000
27A978GLU -1-0.858-0.91611.6750.7450.7450.0000.0000.0000.000
28A979HIS 0-0.051-0.0606.620-0.329-0.3290.0000.0000.0000.000
29A980ARG 10.9080.9159.185-0.011-0.0110.0000.0000.0000.000
30A981ASP -1-0.842-0.91310.2140.8570.8570.0000.0000.0000.000
31A982GLY 00.0200.01012.5030.0150.0150.0000.0000.0000.000
32A983GLY 00.0260.01512.6950.0030.0030.0000.0000.0000.000
33A984HIS 0-0.062-0.01512.4560.0810.0810.0000.0000.0000.000
34A985ALA 0-0.031-0.0268.6310.0540.0540.0000.0000.0000.000
35A986GLY 00.030-0.0069.6140.1860.1860.0000.0000.0000.000
36A987GLY 00.0260.01410.4170.0860.0860.0000.0000.0000.000
37A988ILE 0-0.0020.00513.4140.0650.0650.0000.0000.0000.000
38A989PHE 0-0.031-0.01610.1560.0320.0320.0000.0000.0000.000
39A990ASN 00.0630.03414.9790.0560.0560.0000.0000.0000.000
40A991ARG 10.9090.95115.787-0.673-0.6730.0000.0000.0000.000
41A992TYR 0-0.063-0.0679.8540.1370.1370.0000.0000.0000.000
42A993ASN 00.0160.01316.257-0.123-0.1230.0000.0000.0000.000
43A994ILE 00.0110.00114.7220.1100.1100.0000.0000.0000.000
44A995LEU 0-0.048-0.01717.258-0.111-0.1110.0000.0000.0000.000
45A996LYS 10.9280.95717.523-0.578-0.5780.0000.0000.0000.000
46A997ILE 00.0280.03615.6300.1530.1530.0000.0000.0000.000
47A998GLN 0-0.046-0.02316.272-0.069-0.0690.0000.0000.0000.000
48A999LYS 10.9070.94916.275-0.328-0.3280.0000.0000.0000.000
49A1000VAL 00.0110.00714.224-0.103-0.1030.0000.0000.0000.000
50A1001CYS 0-0.0200.01917.440-0.024-0.0240.0000.0000.0000.000
51A1002ASN 00.017-0.03418.455-0.057-0.0570.0000.0000.0000.000
52A1003LYS 10.9380.94820.4270.1460.1460.0000.0000.0000.000
53A1004LYS 10.9700.99019.7240.5250.5250.0000.0000.0000.000
54A1005LEU 0-0.036-0.02215.200-0.038-0.0380.0000.0000.0000.000
55A1006TRP 00.0650.03817.541-0.042-0.0420.0000.0000.0000.000
56A1007GLU -1-0.843-0.90520.010-0.220-0.2200.0000.0000.0000.000
57A1008ARG 10.9400.97115.6020.9400.9400.0000.0000.0000.000
58A1009TYR 0-0.041-0.01914.956-0.025-0.0250.0000.0000.0000.000
59A1010THR 0-0.070-0.04218.3610.0180.0180.0000.0000.0000.000
60A1011HIS 0-0.0080.00721.7010.0470.0470.0000.0000.0000.000
61A1012ARG 10.8900.94717.5100.6860.6860.0000.0000.0000.000
62A1013ARG 10.8850.93918.9010.0500.0500.0000.0000.0000.000
63A1014LYS 10.8820.93320.3780.2510.2510.0000.0000.0000.000
64A1015GLU -1-0.840-0.91722.548-0.529-0.5290.0000.0000.0000.000
65A1016VAL 0-0.0070.00117.7100.0110.0110.0000.0000.0000.000
66A1017SER 0-0.029-0.02820.9790.0300.0300.0000.0000.0000.000
67A1018GLU -1-0.890-0.93822.776-0.220-0.2200.0000.0000.0000.000
68A1019GLU -1-0.896-0.90522.374-0.491-0.4910.0000.0000.0000.000
69A1020ASN 0-0.087-0.05819.731-0.018-0.0180.0000.0000.0000.000
70A1021HIS 10.8730.93422.4370.1940.1940.0000.0000.0000.000
71A1022ASN 00.0080.01025.6710.0140.0140.0000.0000.0000.000
72A1023HIS 00.0600.03919.1220.0260.0260.0000.0000.0000.000
73A1024ALA 00.0520.02318.917-0.037-0.0370.0000.0000.0000.000
74A1025ASN 0-0.060-0.02315.2920.0510.0510.0000.0000.0000.000
75A1026GLU -1-0.725-0.84415.0530.1100.1100.0000.0000.0000.000
76A1027ARG 10.8680.93711.149-0.219-0.2190.0000.0000.0000.000
77A1028MET 00.0180.02511.634-0.161-0.1610.0000.0000.0000.000
78A1029LEU 0-0.0050.0016.2470.0150.0150.0000.0000.0000.000
79A1030PHE 00.0260.0185.226-0.102-0.1020.0000.0000.0000.000
80A1031HIS 0-0.026-0.0282.645-6.907-2.7591.809-1.926-4.0300.005
81A1032GLY 00.0400.0151.828-11.951-15.69210.847-3.721-3.3850.042
82A1033SER 00.002-0.0061.950-24.173-20.9797.711-4.758-6.149-0.060
83A1034PRO 00.0450.0342.494-1.9710.8871.800-1.123-3.5350.009
84A1035PHE 0-0.021-0.0182.782-3.747-0.3062.672-1.413-4.7000.011
85A1036VAL 00.0680.0436.202-0.226-0.2260.0000.0000.0000.000
86A1037ASN 00.0460.0138.0380.1990.1990.0000.0000.0000.000
87A1038ALA 0-0.014-0.0108.9620.0990.0990.0000.0000.0000.000
88A1039ILE 00.0270.0255.2430.1880.1880.0000.0000.0000.000
89A1040ILE 00.0430.0349.7620.2050.2050.0000.0000.0000.000
90A1041HIS 0-0.077-0.00112.9220.1810.1810.0000.0000.0000.000
91A1042LYS 10.8110.89012.8090.9290.9290.0000.0000.0000.000
92A1043GLY 00.0140.01912.6050.0270.0270.0000.0000.0000.000
93A1044PHE 00.009-0.0065.872-0.164-0.1640.0000.0000.0000.000
94A1045ASP -1-0.870-0.9458.130-2.696-2.6960.0000.0000.0000.000
95A1046GLU -1-0.868-0.9307.231-3.714-3.7140.0000.0000.0000.000
96A1047ARG 10.9130.9645.6801.5221.5220.0000.0000.0000.000
97A1048HIS 0-0.032-0.0203.453-2.034-1.4280.011-0.080-0.5360.000
98A1049ALA 00.0030.0082.871-5.947-3.6000.460-1.163-1.644-0.011
99A1050TYR 0-0.041-0.0162.096-15.731-8.2387.422-4.222-10.693-0.019
100A1051ILE 00.011-0.0113.0012.2732.0960.1260.958-0.9070.000
101A1052GLY 00.003-0.0035.5220.5120.5120.0000.0000.0000.000
102A1053GLY 0-0.0140.0065.5180.3250.3250.0000.0000.0000.000
103A1054MET 0-0.005-0.0205.7630.2750.2750.0000.0000.0000.000
104A1055PHE 00.0090.0125.3590.3090.3090.0000.0000.0000.000
105A1056GLY 00.0340.0428.6410.0760.0760.0000.0000.0000.000
106A1057ALA 00.0120.0077.099-0.295-0.2950.0000.0000.0000.000
107A1058GLY 00.0730.0306.6960.3860.3860.0000.0000.0000.000
108A1059ILE 0-0.002-0.0044.941-1.812-1.8120.0000.0000.0000.000
109A1060TYR 0-0.016-0.0072.234-2.1710.5325.406-1.975-6.1330.004
110A1061PHE 00.0060.0003.100-0.4801.6930.180-0.655-1.699-0.003
111A1062ALA 00.008-0.0032.209-4.971-3.5772.680-1.136-2.938-0.009
112A1063GLU -1-0.748-0.8523.7371.2901.3690.019-0.003-0.0950.000
113A1064ASN 00.0150.0065.847-0.305-0.3050.0000.0000.0000.000
114A1065SER 00.1030.0605.4531.4201.4200.0000.0000.0000.000
115A1066SER 00.0500.0326.4491.1971.1970.0000.0000.0000.000
116A1067LYS 10.8010.8922.353-1.990-0.8791.995-0.512-2.5940.002
117A1068SER 00.0350.0061.989-13.840-11.7106.040-3.512-4.6580.031
118A1069ASN 00.0100.0293.453-2.527-2.8890.0180.748-0.4040.002
119A1070GLN 00.0170.0195.022-1.343-1.3430.0000.0000.0000.000
120A1071TYR 0-0.003-0.0082.167-13.770-3.9358.596-3.465-14.965-0.015
121A1072VAL 0-0.0170.0033.746-1.245-0.4590.010-0.230-0.566-0.001
122A1073TYR 0-0.004-0.0085.927-0.346-0.3460.0000.0000.0000.000
123A1074GLY 00.0030.0052.778-1.433-0.3470.540-0.724-0.9020.004
124A1075ILE 0-0.013-0.0062.422-4.399-1.0782.740-1.042-5.0180.012
125A1076GLY 00.0080.0144.159-0.577-0.2730.003-0.056-0.2510.000
126A1077GLY 00.0650.0366.172-0.107-0.1070.0000.0000.0000.000
127A1078GLY 0-0.033-0.0126.295-0.032-0.0320.0000.0000.0000.000
128A1079THR 0-0.024-0.0266.935-0.230-0.2300.0000.0000.0000.000
129A1080GLY 00.0350.0179.192-0.146-0.1460.0000.0000.0000.000
130A1081CYS 0-0.098-0.00210.030-0.001-0.0010.0000.0000.0000.000
131A1082PRO 00.017-0.00910.567-0.057-0.0570.0000.0000.0000.000
132A1083VAL 0-0.010-0.00612.619-0.054-0.0540.0000.0000.0000.000
133A1084HIS 00.025-0.02715.925-0.052-0.0520.0000.0000.0000.000
134A1085LYS 10.8950.96112.112-0.773-0.7730.0000.0000.0000.000
135A1086ASP -1-0.768-0.89114.3810.7980.7980.0000.0000.0000.000
136A1087ARG 10.8580.92610.371-0.933-0.9330.0000.0000.0000.000
137A1088SER 0-0.004-0.00312.8150.1770.1770.0000.0000.0000.000
138A1089CYS 0-0.0830.03515.146-0.071-0.0710.0000.0000.0000.000
139A1090TYR 00.010-0.02216.5750.0490.0490.0000.0000.0000.000
140A1091ILE 00.001-0.01219.002-0.020-0.0200.0000.0000.0000.000
141A1092CYS 0-0.033-0.03315.410-0.036-0.0360.0000.0000.0000.000
142A1093HIS 00.0420.02716.3550.1280.1280.0000.0000.0000.000
143A1094ARG 10.7960.90510.923-1.746-1.7460.0000.0000.0000.000
144A1095GLN 0-0.012-0.02610.623-0.233-0.2330.0000.0000.0000.000
145A1096LEU 0-0.0300.0035.1510.3470.443-0.001-0.002-0.0920.000
146A1097LEU 0-0.029-0.0166.610-1.189-1.1890.0000.0000.0000.000
147A1098PHE 00.0430.0267.1631.4741.4740.0000.0000.0000.000
148A1099CYS 0-0.069-0.0387.737-0.867-0.8670.0000.0000.0000.000
149A1100ARG 10.8240.89510.356-0.266-0.2660.0000.0000.0000.000
150A1101VAL 0-0.011-0.0048.450-0.245-0.2450.0000.0000.0000.000
151A1102THR 0-0.006-0.01211.9030.0480.0480.0000.0000.0000.000
152A1103LEU 0-0.0070.0009.689-0.165-0.1650.0000.0000.0000.000
153A1104GLY 00.0520.04413.497-0.107-0.1070.0000.0000.0000.000
154A1105LYS 10.9080.97216.5820.3770.3770.0000.0000.0000.000
155A1106SER 0-0.0060.00712.031-0.079-0.0790.0000.0000.0000.000
156A1107PHE 0-0.023-0.01113.8920.0670.0670.0000.0000.0000.000
157A1108LEU 0-0.017-0.00212.860-0.062-0.0620.0000.0000.0000.000
158A1109GLN 00.0160.01011.028-0.017-0.0170.0000.0000.0000.000
159A1110PHE 00.006-0.00111.322-0.033-0.0330.0000.0000.0000.000
160A1111SER 00.0180.0188.800-0.082-0.0820.0000.0000.0000.000
161A1112ALA 00.0330.02711.0930.0550.0550.0000.0000.0000.000
162A1113MET 0-0.023-0.0147.1210.0540.0540.0000.0000.0000.000
163A1114NME 00.0630.0508.4650.1040.1040.0000.0000.0000.000
164A1114ACE 00.019-0.0179.9640.1130.1130.0000.0000.0000.000
165A1115MET 0-0.070-0.0308.310-0.941-0.9410.0000.0000.0000.000
166A1116ALA 0-0.0270.00610.4030.4020.4020.0000.0000.0000.000
167A1117HIS 00.017-0.00212.802-0.024-0.0240.0000.0000.0000.000
168A1118SER 0-0.017-0.00514.239-0.014-0.0140.0000.0000.0000.000
169A1119PRO 00.0180.00814.0500.0510.0510.0000.0000.0000.000
170A1120PRO 00.0750.02417.2930.0250.0250.0000.0000.0000.000
171A1121GLY 00.0000.01720.8820.0340.0340.0000.0000.0000.000
172A1122HIS 0-0.091-0.05516.1990.0950.0950.0000.0000.0000.000
173A1123HIS 00.005-0.02715.965-0.044-0.0440.0000.0000.0000.000
174A1124SER 0-0.031-0.03210.729-0.070-0.0700.0000.0000.0000.000
175A1125VAL 00.0030.0119.4430.0970.0970.0000.0000.0000.000
176A1126THR 0-0.012-0.0278.7540.0080.0080.0000.0000.0000.000
177A1127GLY 00.0310.0117.2580.0130.0130.0000.0000.0000.000
178A1128ARG 10.9830.9707.6500.0820.0820.0000.0000.0000.000
179A1129PRO 0-0.036-0.0257.706-0.028-0.0280.0000.0000.0000.000
180A1130SER 00.0060.00010.3310.0840.0840.0000.0000.0000.000
181A1131VAL 0-0.0250.00312.9780.0310.0310.0000.0000.0000.000
182A1132ASN 0-0.015-0.02011.3320.0570.0570.0000.0000.0000.000
183A1133GLY 00.0410.02012.846-0.008-0.0080.0000.0000.0000.000
184A1134LEU 00.0210.00513.6590.0160.0160.0000.0000.0000.000
185A1135ALA 0-0.114-0.0488.4260.1340.1340.0000.0000.0000.000
186A1136LEU 00.0160.0158.054-0.138-0.1380.0000.0000.0000.000
187A1137ALA 0-0.058-0.0236.910-0.222-0.2220.0000.0000.0000.000
188A1138GLU -1-0.900-0.9572.337-6.748-3.7651.635-1.677-2.941-0.023
189A1139TYR 0-0.090-0.0844.110-0.224-0.0670.000-0.014-0.1430.000
190A1140VAL 0-0.0180.0034.757-0.354-0.224-0.001-0.007-0.1220.000
191A1141ILE 00.0120.0097.0980.3490.3490.0000.0000.0000.000
192A1142TYR 00.001-0.0309.676-0.472-0.4720.0000.0000.0000.000
193A1143ARG 10.9690.98811.6440.9570.9570.0000.0000.0000.000
194A1144GLY 00.0610.03610.7000.0260.0260.0000.0000.0000.000
195A1145GLU -1-0.930-0.98611.692-1.053-1.0530.0000.0000.0000.000
196A1146GLN 0-0.050-0.03413.5220.1680.1680.0000.0000.0000.000
197A1147ALA 00.0170.01110.5480.2050.2050.0000.0000.0000.000
198A1148TYR 0-0.037-0.04312.630-0.303-0.3030.0000.0000.0000.000
199A1149PRO 0-0.022-0.01510.4970.2880.2880.0000.0000.0000.000
200A1150GLU -1-0.804-0.88811.9410.3670.3670.0000.0000.0000.000
201A1151TYR 0-0.034-0.05712.637-0.119-0.1190.0000.0000.0000.000
202A1152LEU 0-0.032-0.01611.6210.2570.2570.0000.0000.0000.000
203A1153ILE 00.0270.01210.652-0.151-0.1510.0000.0000.0000.000
204A1154THR 0-0.020-0.01512.0730.1360.1360.0000.0000.0000.000
205A1155TYR 0-0.011-0.0309.2130.1250.1250.0000.0000.0000.000
206A1156GLN 00.0270.01914.816-0.002-0.0020.0000.0000.0000.000
207A1157ILE 0-0.0160.00512.8960.0690.0690.0000.0000.0000.000
208A1158MET 00.003-0.00415.623-0.116-0.1160.0000.0000.0000.000
209A1159ARG 10.9280.95618.590-0.564-0.5640.0000.0000.0000.000
210A1160PRO 0-0.058-0.02719.176-0.017-0.0170.0000.0000.0000.000
211A1161GLU -2-1.791-1.86921.7441.0641.0640.0000.0000.0000.000