FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: QK8GY

Calculation Name: 2UWI-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2UWI

Chain ID: A

ChEMBL ID:

UniProt ID: Q8UYL3

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 227
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -889249.351064
FMO2-HF: Nuclear repulsion 834897.296084
FMO2-HF: Total energy -54352.05498
FMO2-MP2: Total energy -54492.466934


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:22:CYS)


Summations of interaction energy for fragment #1(A:22:CYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.2312.5150.078-0.609-1.749-0.001
Interaction energy analysis for fragmet #1(A:22:CYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.163 / q_NPA : 0.010
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A23GLU-1-0.989-0.8204.327-0.0720.3190.001-0.158-0.2350.000
5A24GLN00.089-0.1113.841-1.810-0.684-0.010-0.633-0.4830.001
6A24GLN0-0.0510.1074.4090.4430.508-0.001-0.009-0.0540.000
7A25GLY0-0.023-0.1206.6730.5460.5460.0000.0000.0000.000
8A26VAL00.050-0.0146.6480.3640.3640.0000.0000.0000.000
9A26VAL0-0.0740.1346.4000.0190.0190.0000.0000.0000.000
10A27SER00.018-0.1044.4380.7800.863-0.002-0.006-0.0750.000
11A27SER0-0.0230.0753.639-0.200-0.1580.0080.199-0.248-0.001
12A28TYR00.038-0.0893.766-2.357-2.3720.0530.066-0.104-0.001
13A28TYR0-0.0380.0945.7500.3220.380-0.001-0.009-0.0470.000
14A29TYR00.154-0.0894.140-0.0090.3050.030-0.052-0.2910.000
15A29TYR0-0.0500.1224.217-0.1430.0200.001-0.055-0.1080.000
16A30ASN00.054-0.0854.9470.2120.282-0.001-0.019-0.0500.000
17A30ASN0-0.0780.0528.5710.0890.0890.0000.0000.0000.000
18A31SER00.047-0.0888.4450.2110.2110.0000.0000.0000.000
19A31SER0-0.0290.05610.684-0.073-0.0730.0000.0000.0000.000
20A32GLN00.077-0.07810.7550.1290.1290.0000.0000.0000.000
21A32GLN0-0.0780.08413.653-0.032-0.0320.0000.0000.0000.000
22A33GLU00.007-0.09911.5470.1020.1020.0000.0000.0000.000
23A33GLU-1-0.870-0.80710.824-0.249-0.2490.0000.0000.0000.000
24A34LEU00.008-0.0949.4680.0610.0610.0000.0000.0000.000
25A34LEU0-0.0690.10110.6470.0210.0210.0000.0000.0000.000
26A35LYS00.094-0.0947.0890.3370.3370.0000.0000.0000.000
27A35LYS10.8541.0268.2370.1340.1340.0000.0000.0000.000
28A36CYS00.066-0.1083.837-0.629-0.6750.0020.080-0.0360.000
29A37CYS00.074-0.1044.7970.6350.668-0.002-0.013-0.0180.000
30A37CYS0-0.2410.1507.8510.0540.0540.0000.0000.0000.000
31A38LYS00.139-0.0996.225-0.851-0.8510.0000.0000.0000.000
32A38LYS10.8401.0629.0880.2750.2750.0000.0000.0000.000
33A39LEU00.050-0.0758.3110.0640.0640.0000.0000.0000.000
34A39LEU0-0.0920.0837.0270.0430.0430.0000.0000.0000.000
35A40CYS00.109-0.1299.4160.1270.1270.0000.0000.0000.000
36A40CYS0-0.2550.22414.154-0.017-0.0170.0000.0000.0000.000
37A41LYS00.077-0.06913.157-0.094-0.0940.0000.0000.0000.000
38A41LYS10.8821.07414.7070.3630.3630.0000.0000.0000.000
39A42PRO0-0.012-0.09114.9210.0340.0340.0000.0000.0000.000
40A43GLY00.0390.00917.7670.0390.0390.0000.0000.0000.000
41A44THR0-0.0410.02618.3340.0470.0470.0000.0000.0000.000
42A44THR0-0.1000.00217.004-0.008-0.0080.0000.0000.0000.000
43A45TYR00.107-0.08116.966-0.064-0.0640.0000.0000.0000.000
44A45TYR0-0.0700.05618.6480.0070.0070.0000.0000.0000.000
45A46SER00.095-0.07615.2830.0370.0370.0000.0000.0000.000
46A46SER0-0.1010.04714.283-0.040-0.0400.0000.0000.0000.000
47A47ASP00.077-0.08316.220-0.001-0.0010.0000.0000.0000.000
48A47ASP-1-0.950-0.82419.571-0.273-0.2730.0000.0000.0000.000
49A48HIS00.012-0.13817.4310.0130.0130.0000.0000.0000.000
50A48HIS0-0.0550.11218.0980.0060.0060.0000.0000.0000.000
51A49ARG00.082-0.05313.908-0.038-0.0380.0000.0000.0000.000
52A49ARG10.8921.03413.7680.5600.5600.0000.0000.0000.000
53A50CYS00.039-0.05111.7010.0630.0630.0000.0000.0000.000
54A51ASP00.099-0.08213.138-0.061-0.0610.0000.0000.0000.000
55A51ASP-1-0.871-0.80316.478-0.163-0.1630.0000.0000.0000.000
56A52LYS00.088-0.11314.1390.0090.0090.0000.0000.0000.000
57A52LYS10.7401.00415.0420.1440.1440.0000.0000.0000.000
58A53TYR00.057-0.08515.7890.0540.0540.0000.0000.0000.000
59A53TYR0-0.0870.08318.8900.0100.0100.0000.0000.0000.000
60A54SER0-0.024-0.09015.7840.0530.0530.0000.0000.0000.000
61A54SER0-0.0330.06516.659-0.013-0.0130.0000.0000.0000.000
62A55ASP00.152-0.07012.045-0.035-0.0350.0000.0000.0000.000
63A55ASP-1-0.916-0.81210.174-0.487-0.4870.0000.0000.0000.000
64A56THR0-0.021-0.09011.5000.0690.0690.0000.0000.0000.000
65A56THR0-0.0530.01610.358-0.010-0.0100.0000.0000.0000.000
66A57ILE00.060-0.09513.1140.0270.0270.0000.0000.0000.000
67A57ILE0-0.0690.12816.9750.0070.0070.0000.0000.0000.000
68A58CYS00.054-0.12516.286-0.024-0.0240.0000.0000.0000.000
69A59GLY00.071-0.05717.1440.0460.0460.0000.0000.0000.000
70A60HIS00.0950.00220.385-0.041-0.0410.0000.0000.0000.000
71A60HIS0-0.0950.07822.365-0.016-0.0160.0000.0000.0000.000
72A61CYS00.096-0.12222.7290.0050.0050.0000.0000.0000.000
73A61CYS0-0.2610.22221.669-0.016-0.0160.0000.0000.0000.000
74A62PRO00.000-0.07723.7440.0200.0200.0000.0000.0000.000
75A63SER00.1070.02527.330-0.014-0.0140.0000.0000.0000.000
76A63SER0-0.0300.05731.5710.0050.0050.0000.0000.0000.000
77A64ASP00.008-0.08830.067-0.006-0.0060.0000.0000.0000.000
78A64ASP-1-0.951-0.82031.694-0.164-0.1640.0000.0000.0000.000
79A65THR00.002-0.10526.2490.0030.0030.0000.0000.0000.000
80A65THR0-0.0630.03925.463-0.011-0.0110.0000.0000.0000.000
81A66PHE00.124-0.07823.5410.0100.0100.0000.0000.0000.000
82A66PHE0-0.1080.07822.383-0.006-0.0060.0000.0000.0000.000
83A67THR00.030-0.09818.904-0.004-0.0040.0000.0000.0000.000
84A67THR0-0.0650.06217.9250.0030.0030.0000.0000.0000.000
85A68SER00.099-0.05419.4270.0130.0130.0000.0000.0000.000
86A68SER0-0.0430.07119.983-0.008-0.0080.0000.0000.0000.000
87A69ILE0-0.014-0.10615.3270.0430.0430.0000.0000.0000.000
88A69ILE0-0.0500.09914.105-0.006-0.0060.0000.0000.0000.000
89A70TYR00.172-0.06711.4620.0960.0960.0000.0000.0000.000
90A70TYR0-0.0570.11110.602-0.007-0.0070.0000.0000.0000.000
91A71ASN0-0.038-0.10311.995-0.167-0.1670.0000.0000.0000.000
92A71ASN0-0.0920.05614.2050.0340.0340.0000.0000.0000.000
93A72ARG00.112-0.08911.968-0.031-0.0310.0000.0000.0000.000
94A72ARG10.8561.0398.8901.3581.3580.0000.0000.0000.000
95A73SER00.007-0.10812.7310.0380.0380.0000.0000.0000.000
96A73SER00.0060.09116.883-0.026-0.0260.0000.0000.0000.000
97A74PRO0-0.016-0.07416.4710.0040.0040.0000.0000.0000.000
98A75TRP00.0880.01318.9360.0270.0270.0000.0000.0000.000
99A75TRP0-0.0570.10022.7730.0030.0030.0000.0000.0000.000
100A76CYS00.095-0.09220.553-0.048-0.0480.0000.0000.0000.000
101A77HIS00.077-0.09922.1900.0200.0200.0000.0000.0000.000
102A77HIS0-0.0910.08719.2520.0210.0210.0000.0000.0000.000
103A78SER00.143-0.05724.1030.0050.0050.0000.0000.0000.000
104A78SER0-0.0350.07728.7910.0010.0010.0000.0000.0000.000
105A79CYS0-0.016-0.11627.780-0.013-0.0130.0000.0000.0000.000
106A79CYS0-0.2480.21628.591-0.003-0.0030.0000.0000.0000.000
107A80ARG00.086-0.05029.2760.0090.0090.0000.0000.0000.000
108A80ARG10.7340.98429.3930.2120.2120.0000.0000.0000.000
109A81GLY00.029-0.09631.9230.0030.0030.0000.0000.0000.000
110A82PRO00.028-0.01535.437-0.003-0.0030.0000.0000.0000.000
111A83CYS00.1440.03537.842-0.001-0.0010.0000.0000.0000.000
112A83CYS0-0.2680.20235.782-0.002-0.0020.0000.0000.0000.000
113A84GLY00.038-0.08938.7110.0010.0010.0000.0000.0000.000
114A85THR00.0190.03142.512-0.002-0.0020.0000.0000.0000.000
115A85THR0-0.0210.05246.969-0.001-0.0010.0000.0000.0000.000
116A86ASN00.126-0.01244.8710.0020.0020.0000.0000.0000.000
117A86ASN0-0.1170.04443.936-0.003-0.0030.0000.0000.0000.000
118A87ARG00.024-0.13740.2410.0010.0010.0000.0000.0000.000
119A87ARG10.7901.01939.0360.1160.1160.0000.0000.0000.000
120A88VAL00.114-0.07239.6910.0040.0040.0000.0000.0000.000
121A88VAL0-0.0560.11238.7480.0010.0010.0000.0000.0000.000
122A89GLU00.114-0.09636.240-0.006-0.0060.0000.0000.0000.000
123A89GLU-1-0.889-0.79334.859-0.147-0.1470.0000.0000.0000.000
124A90VAL00.035-0.13434.6880.0040.0040.0000.0000.0000.000
125A90VAL0-0.1160.10632.9630.0010.0010.0000.0000.0000.000
126A91THR00.020-0.10030.3400.0050.0050.0000.0000.0000.000
127A91THR0-0.0200.08528.223-0.005-0.0050.0000.0000.0000.000
128A92PRO00.031-0.05330.974-0.003-0.0030.0000.0000.0000.000
129A93CYS00.1970.00929.307-0.015-0.0150.0000.0000.0000.000
130A94THR0-0.069-0.10727.7310.0150.0150.0000.0000.0000.000
131A94THR0-0.0340.03126.583-0.004-0.0040.0000.0000.0000.000
132A95PRO00.114-0.04023.955-0.016-0.0160.0000.0000.0000.000
133A96THR00.013-0.00621.781-0.032-0.0320.0000.0000.0000.000
134A96THR0-0.0200.08721.1050.0030.0030.0000.0000.0000.000
135A97THR0-0.020-0.09722.623-0.030-0.0300.0000.0000.0000.000
136A97THR0-0.0300.09624.8240.0030.0030.0000.0000.0000.000
137A98ASN00.181-0.03025.2570.0130.0130.0000.0000.0000.000
138A98ASN0-0.0570.06925.7580.0090.0090.0000.0000.0000.000
139A99ARG00.136-0.05827.0660.0010.0010.0000.0000.0000.000
140A99ARG10.6730.97531.7000.1640.1640.0000.0000.0000.000
141A100ILE0-0.010-0.14930.721-0.007-0.0070.0000.0000.0000.000
142A100ILE0-0.1110.10327.9340.0010.0010.0000.0000.0000.000
143A101CYS00.133-0.12231.8800.0080.0080.0000.0000.0000.000
144A102HIS00.052-0.10735.480-0.005-0.0050.0000.0000.0000.000
145A102HIS0-0.0900.08632.6100.0020.0020.0000.0000.0000.000
146A103CYS00.181-0.07737.2650.0030.0030.0000.0000.0000.000
147A103CYS0-0.2260.16940.644-0.002-0.0020.0000.0000.0000.000
148A104ASP00.083-0.04640.849-0.003-0.0030.0000.0000.0000.000
149A104ASP-1-0.846-0.80344.412-0.086-0.0860.0000.0000.0000.000
150A105SER00.059-0.08243.383-0.002-0.0020.0000.0000.0000.000
151A105SER0-0.0240.08544.4370.0010.0010.0000.0000.0000.000
152A106ASN00.007-0.09544.7590.0020.0020.0000.0000.0000.000
153A106ASN0-0.1170.05148.1950.0030.0030.0000.0000.0000.000
154A107SER0-0.010-0.09345.0290.0040.0040.0000.0000.0000.000
155A107SER0-0.0350.05344.2260.0000.0000.0000.0000.0000.000
156A108TYR00.071-0.09841.940-0.002-0.0020.0000.0000.0000.000
157A108TYR0-0.0680.11242.2320.0000.0000.0000.0000.0000.000
158A109CYS00.153-0.13738.6100.0030.0030.0000.0000.0000.000
159A109CYS0-0.3050.23436.7010.0000.0000.0000.0000.0000.000
160A110LEU00.065-0.11540.1050.0000.0000.0000.0000.0000.000
161A110LEU0-0.0800.10542.2540.0000.0000.0000.0000.0000.000
162A111LEU00.138-0.09737.6140.0010.0010.0000.0000.0000.000
163A111LEU0-0.1200.11036.1470.0010.0010.0000.0000.0000.000
164A112LYS00.095-0.10533.9360.0020.0020.0000.0000.0000.000
165A112LYS10.9301.08532.8990.1550.1550.0000.0000.0000.000
166A113ALA00.092-0.07431.4180.0010.0010.0000.0000.0000.000
167A113ALA0-0.0830.09930.647-0.001-0.0010.0000.0000.0000.000
168A114SER00.045-0.10827.1130.0110.0110.0000.0000.0000.000
169A114SER0-0.0260.09826.1120.0000.0000.0000.0000.0000.000
170A115ASP00.006-0.09926.399-0.009-0.0090.0000.0000.0000.000
171A115ASP-1-0.822-0.78826.120-0.242-0.2420.0000.0000.0000.000
172A116GLY0-0.020-0.10927.2680.0040.0040.0000.0000.0000.000
173A117ASN00.1040.03030.5480.0160.0160.0000.0000.0000.000
174A117ASN0-0.0800.08831.338-0.001-0.0010.0000.0000.0000.000
175A118CYS00.090-0.14932.592-0.005-0.0050.0000.0000.0000.000
176A119VAL00.046-0.10536.0610.0020.0020.0000.0000.0000.000
177A119VAL0-0.0570.12135.211-0.001-0.0010.0000.0000.0000.000
178A120THR0-0.035-0.09437.6430.0050.0050.0000.0000.0000.000
179A120THR0-0.0080.07840.868-0.002-0.0020.0000.0000.0000.000
180A121CYS00.148-0.07540.896-0.002-0.0020.0000.0000.0000.000
181A122ALA00.102-0.11542.8810.0020.0020.0000.0000.0000.000
182A122ALA0-0.0560.13745.3120.0000.0000.0000.0000.0000.000
183A123PRO0-0.012-0.09345.946-0.001-0.0010.0000.0000.0000.000
184A124LYS00.1520.00748.1530.0000.0000.0000.0000.0000.000
185A124LYS10.6650.98943.1850.0880.0880.0000.0000.0000.000
186A125THR00.008-0.11248.7010.0020.0020.0000.0000.0000.000
187A125THR0-0.0380.09151.356-0.001-0.0010.0000.0000.0000.000
188A126LYS00.104-0.07451.9160.0000.0000.0000.0000.0000.000
189A126LYS10.8711.08154.7870.0520.0520.0000.0000.0000.000
190A127CYS00.105-0.12554.6230.0010.0010.0000.0000.0000.000
191A127CYS0-0.2000.22354.430-0.001-0.0010.0000.0000.0000.000
192A128GLY00.030-0.06956.6150.0000.0000.0000.0000.0000.000
193A129ARG00.057-0.03560.3370.0000.0000.0000.0000.0000.000
194A129ARG10.9451.11263.3520.0410.0410.0000.0000.0000.000
195A130GLY00.054-0.06563.0950.0010.0010.0000.0000.0000.000
196A131TYR00.024-0.00859.2800.0010.0010.0000.0000.0000.000
197A131TYR0-0.0850.09558.2380.0000.0000.0000.0000.0000.000
198A132GLY00.034-0.10056.7410.0000.0000.0000.0000.0000.000
199A133LYS00.139-0.00652.0900.0000.0000.0000.0000.0000.000
200A133LYS10.7311.01847.2050.0710.0710.0000.0000.0000.000
201A134LYS00.024-0.14951.9350.0020.0020.0000.0000.0000.000
202A134LYS10.8661.06051.0410.0500.0500.0000.0000.0000.000
203A135GLY0-0.010-0.09347.8370.0010.0010.0000.0000.0000.000
204A136GLU00.072-0.00944.8330.0030.0030.0000.0000.0000.000
205A136GLU-1-0.802-0.74443.590-0.083-0.0830.0000.0000.0000.000
206A137ASP00.034-0.08844.5470.0020.0020.0000.0000.0000.000
207A137ASP-1-0.867-0.83144.369-0.083-0.0830.0000.0000.0000.000
208A138GLU00.114-0.11840.344-0.001-0.0010.0000.0000.0000.000
209A138GLU-1-1.016-0.82637.540-0.100-0.1000.0000.0000.0000.000
210A139MET00.065-0.11139.325-0.007-0.0070.0000.0000.0000.000
211A139MET0-0.1220.10241.1090.0000.0000.0000.0000.0000.000
212A140GLY0-0.038-0.12041.134-0.004-0.0040.0000.0000.0000.000
213A141ASN00.0850.01342.3260.0010.0010.0000.0000.0000.000
214A141ASN0-0.0230.10945.8810.0000.0000.0000.0000.0000.000
215A142THR00.003-0.08746.0210.0000.0000.0000.0000.0000.000
216A142THR00.0030.05349.6710.0000.0000.0000.0000.0000.000
217A143ILE00.140-0.06548.9750.0000.0000.0000.0000.0000.000
218A143ILE0-0.1090.13046.8150.0010.0010.0000.0000.0000.000
219A144CYS00.046-0.13850.6420.0010.0010.0000.0000.0000.000
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