
FMODB ID: QKM2Y
Calculation Name: 1TQ1-A-Other547
Preferred Name:
Target Type:
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
PDB ID: 1TQ1
Chain ID: A
UniProt ID: Q39129
Base Structure: SolutionNMR
Registration Date: 2025-09-02
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptAll |
Protonation | MOE:Protonate 3D |
Complement | MOE:Homology Modeling |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 119 |
LigandResidueName | |
LigandFragmentNumber | 0 |
LigandCharge | |
Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
FMO2-HF: Electronic energy | -859064.691647 |
---|---|
FMO2-HF: Nuclear repulsion | 814654.517701 |
FMO2-HF: Total energy | -44410.173947 |
FMO2-MP2: Total energy | -44538.660239 |
3D Structure
Ligand structure

Ligand Interaction

Ligand binding energy
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:11:ALA)
Summations of interaction energy for
fragment #1(A:11:ALA)
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-51.104 | -49.428 | -0.024 | -0.587 | -1.065 | -0.002 |
Interaction energy analysis for fragmet #1(A:11:ALA)
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | A | 13 | GLU | -1 | -0.896 | -0.951 | 3.788 | -35.603 | -33.927 | -0.024 | -0.587 | -1.065 | -0.002 |
4 | A | 14 | SER | 0 | -0.024 | -0.014 | 6.815 | 4.577 | 4.577 | 0.000 | 0.000 | 0.000 | 0.000 |
5 | A | 15 | ARG | 1 | 0.865 | 0.940 | 8.861 | 30.407 | 30.407 | 0.000 | 0.000 | 0.000 | 0.000 |
6 | A | 16 | VAL | 0 | 0.046 | 0.022 | 9.120 | -0.474 | -0.474 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | A | 17 | PRO | 0 | 0.000 | 0.027 | 11.596 | 1.109 | 1.109 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | A | 18 | SER | 0 | -0.009 | -0.025 | 15.310 | -0.285 | -0.285 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | A | 19 | SER | 0 | 0.013 | 0.013 | 17.345 | 0.361 | 0.361 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | A | 20 | VAL | 0 | -0.001 | -0.001 | 19.927 | -0.013 | -0.013 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | A | 21 | SER | 0 | -0.002 | -0.008 | 22.821 | 0.237 | 0.237 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | A | 22 | VAL | 0 | 0.041 | 0.011 | 25.610 | -0.246 | -0.246 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | A | 23 | THR | 0 | -0.021 | -0.009 | 27.508 | -0.156 | -0.156 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | A | 24 | VAL | 0 | 0.032 | 0.019 | 22.241 | 0.103 | 0.103 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | A | 25 | ALA | 0 | 0.012 | 0.001 | 22.915 | -0.329 | -0.329 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | A | 26 | HIS | 0 | 0.008 | 0.007 | 23.986 | -0.228 | -0.228 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | A | 27 | ASP | -1 | -0.912 | -0.951 | 23.384 | -12.509 | -12.509 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | A | 28 | LEU | 0 | -0.020 | -0.021 | 18.220 | -0.328 | -0.328 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | A | 29 | LEU | 0 | -0.003 | 0.002 | 22.144 | -0.311 | -0.311 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | A | 30 | LEU | 0 | -0.028 | -0.015 | 25.109 | 0.245 | 0.245 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | A | 31 | ALA | 0 | -0.071 | -0.023 | 21.198 | 0.105 | 0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | A | 32 | GLY | 0 | -0.012 | 0.004 | 22.597 | -0.318 | -0.318 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | A | 33 | HIS | 0 | -0.051 | -0.018 | 18.088 | -0.508 | -0.508 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | A | 34 | ARG | 1 | 0.909 | 0.956 | 18.346 | 17.025 | 17.025 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | A | 35 | TYR | 0 | 0.057 | 0.020 | 21.799 | -0.352 | -0.352 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | A | 36 | LEU | 0 | -0.012 | 0.002 | 23.600 | 0.422 | 0.422 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | A | 37 | ASP | -1 | -0.794 | -0.890 | 25.477 | -10.686 | -10.686 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | A | 38 | VAL | 0 | -0.004 | -0.003 | 26.801 | 0.091 | 0.091 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | A | 39 | ARG | 1 | 0.953 | 1.006 | 29.803 | 8.887 | 8.887 | 0.000 | 0.000 | 0.000 | 0.000 |
30 | A | 40 | THR | 0 | -0.023 | -0.037 | 33.315 | 0.320 | 0.320 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | A | 41 | PRO | 0 | -0.006 | -0.013 | 34.335 | -0.035 | -0.035 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | A | 42 | GLU | -1 | -0.921 | -0.962 | 35.724 | -7.843 | -7.843 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | A | 43 | GLU | -1 | -0.825 | -0.919 | 33.183 | -9.644 | -9.644 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | A | 44 | PHE | 0 | 0.049 | 0.015 | 32.223 | 0.027 | 0.027 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | A | 45 | SER | 0 | -0.056 | -0.028 | 35.652 | 0.068 | 0.068 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | A | 46 | GLN | 0 | -0.067 | -0.028 | 38.519 | 0.328 | 0.328 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | A | 47 | GLY | 0 | -0.018 | 0.006 | 36.570 | 0.117 | 0.117 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | A | 48 | HIS | 0 | -0.025 | -0.025 | 31.120 | -0.291 | -0.291 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | A | 49 | ALA | 0 | 0.000 | -0.012 | 32.969 | 0.355 | 0.355 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | A | 50 | CYS | -1 | -0.804 | -0.818 | 32.855 | -9.505 | -9.505 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | A | 51 | GLY | 0 | 0.014 | 0.020 | 29.757 | -0.058 | -0.058 | 0.000 | 0.000 | 0.000 | 0.000 |
42 | A | 52 | ALA | 0 | -0.049 | -0.025 | 28.661 | -0.353 | -0.353 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | A | 53 | ILE | 0 | -0.026 | -0.003 | 26.730 | 0.318 | 0.318 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | A | 54 | ASN | 0 | -0.028 | -0.025 | 28.057 | -0.561 | -0.561 | 0.000 | 0.000 | 0.000 | 0.000 |
45 | A | 55 | VAL | 0 | 0.012 | -0.003 | 27.155 | 0.286 | 0.286 | 0.000 | 0.000 | 0.000 | 0.000 |
46 | A | 56 | PRO | 0 | -0.022 | 0.006 | 29.173 | -0.198 | -0.198 | 0.000 | 0.000 | 0.000 | 0.000 |
47 | A | 57 | TYR | 0 | 0.025 | 0.013 | 25.199 | 0.014 | 0.014 | 0.000 | 0.000 | 0.000 | 0.000 |
48 | A | 58 | MET | 0 | -0.055 | -0.020 | 22.619 | -0.484 | -0.484 | 0.000 | 0.000 | 0.000 | 0.000 |
49 | A | 59 | ASN | 0 | -0.037 | -0.021 | 27.210 | 0.520 | 0.520 | 0.000 | 0.000 | 0.000 | 0.000 |
50 | A | 60 | ARG | 1 | 0.926 | 0.961 | 28.795 | 9.244 | 9.244 | 0.000 | 0.000 | 0.000 | 0.000 |
51 | A | 61 | GLY | 0 | 0.071 | 0.023 | 30.164 | 0.375 | 0.375 | 0.000 | 0.000 | 0.000 | 0.000 |
52 | A | 62 | ALA | 0 | -0.013 | -0.018 | 30.293 | -0.175 | -0.175 | 0.000 | 0.000 | 0.000 | 0.000 |
53 | A | 63 | SER | 0 | -0.007 | 0.002 | 24.736 | -0.236 | -0.236 | 0.000 | 0.000 | 0.000 | 0.000 |
54 | A | 64 | GLY | 0 | 0.025 | 0.017 | 25.218 | -0.479 | -0.479 | 0.000 | 0.000 | 0.000 | 0.000 |
55 | A | 65 | MET | 0 | -0.076 | -0.028 | 26.849 | 0.325 | 0.325 | 0.000 | 0.000 | 0.000 | 0.000 |
56 | A | 66 | SER | 0 | 0.095 | 0.052 | 23.717 | -0.261 | -0.261 | 0.000 | 0.000 | 0.000 | 0.000 |
57 | A | 67 | LYS | 1 | 0.927 | 0.961 | 26.787 | 10.140 | 10.140 | 0.000 | 0.000 | 0.000 | 0.000 |
58 | A | 68 | ASN | 0 | 0.012 | -0.003 | 26.456 | -0.530 | -0.530 | 0.000 | 0.000 | 0.000 | 0.000 |
59 | A | 69 | THR | 0 | -0.056 | -0.033 | 27.851 | 0.515 | 0.515 | 0.000 | 0.000 | 0.000 | 0.000 |
60 | A | 70 | ASP | -1 | -0.803 | -0.883 | 27.382 | -11.059 | -11.059 | 0.000 | 0.000 | 0.000 | 0.000 |
61 | A | 71 | PHE | 0 | 0.032 | -0.011 | 24.476 | -0.419 | -0.419 | 0.000 | 0.000 | 0.000 | 0.000 |
62 | A | 72 | LEU | 0 | -0.024 | -0.006 | 22.122 | -0.665 | -0.665 | 0.000 | 0.000 | 0.000 | 0.000 |
63 | A | 73 | GLU | -1 | -0.899 | -0.948 | 20.665 | -13.491 | -13.491 | 0.000 | 0.000 | 0.000 | 0.000 |
64 | A | 74 | GLN | 0 | -0.013 | -0.013 | 19.761 | -0.880 | -0.880 | 0.000 | 0.000 | 0.000 | 0.000 |
65 | A | 75 | VAL | 0 | -0.051 | -0.002 | 18.506 | -0.793 | -0.793 | 0.000 | 0.000 | 0.000 | 0.000 |
66 | A | 76 | SER | 0 | 0.037 | 0.011 | 16.700 | -1.632 | -1.632 | 0.000 | 0.000 | 0.000 | 0.000 |
67 | A | 77 | SER | 0 | -0.070 | -0.041 | 15.315 | -1.701 | -1.701 | 0.000 | 0.000 | 0.000 | 0.000 |
68 | A | 78 | HIS | 0 | -0.048 | -0.049 | 10.553 | -2.948 | -2.948 | 0.000 | 0.000 | 0.000 | 0.000 |
69 | A | 79 | PHE | 0 | -0.039 | 0.003 | 12.088 | -1.723 | -1.723 | 0.000 | 0.000 | 0.000 | 0.000 |
70 | A | 80 | GLY | 0 | 0.072 | 0.034 | 14.669 | 0.563 | 0.563 | 0.000 | 0.000 | 0.000 | 0.000 |
71 | A | 81 | GLN | 0 | 0.023 | -0.019 | 16.756 | 0.612 | 0.612 | 0.000 | 0.000 | 0.000 | 0.000 |
72 | A | 82 | SER | 0 | -0.012 | -0.026 | 18.778 | 0.912 | 0.912 | 0.000 | 0.000 | 0.000 | 0.000 |
73 | A | 83 | ASP | -1 | -0.882 | -0.934 | 14.164 | -20.493 | -20.493 | 0.000 | 0.000 | 0.000 | 0.000 |
74 | A | 84 | ASN | 0 | -0.020 | -0.009 | 13.186 | -0.592 | -0.592 | 0.000 | 0.000 | 0.000 | 0.000 |
75 | A | 85 | ILE | 0 | -0.093 | -0.025 | 15.006 | 1.032 | 1.032 | 0.000 | 0.000 | 0.000 | 0.000 |
76 | A | 86 | ILE | 0 | -0.021 | -0.007 | 18.207 | -0.602 | -0.602 | 0.000 | 0.000 | 0.000 | 0.000 |
77 | A | 87 | VAL | 0 | 0.036 | 0.006 | 20.511 | 0.595 | 0.595 | 0.000 | 0.000 | 0.000 | 0.000 |
78 | A | 88 | GLY | 0 | -0.007 | 0.010 | 22.853 | -0.201 | -0.201 | 0.000 | 0.000 | 0.000 | 0.000 |
79 | A | 89 | CYS | -1 | -0.733 | -0.743 | 25.899 | -10.483 | -10.483 | 0.000 | 0.000 | 0.000 | 0.000 |
80 | A | 90 | GLN | 0 | 0.006 | -0.006 | 28.658 | 0.257 | 0.257 | 0.000 | 0.000 | 0.000 | 0.000 |
81 | A | 91 | SER | 0 | -0.095 | -0.083 | 31.441 | 0.436 | 0.436 | 0.000 | 0.000 | 0.000 | 0.000 |
82 | A | 92 | GLY | 0 | 0.066 | 0.015 | 29.577 | -0.373 | -0.373 | 0.000 | 0.000 | 0.000 | 0.000 |
83 | A | 93 | GLY | 0 | -0.012 | -0.004 | 29.010 | 0.356 | 0.356 | 0.000 | 0.000 | 0.000 | 0.000 |
84 | A | 94 | ARG | 1 | 0.884 | 0.914 | 29.393 | 8.493 | 8.493 | 0.000 | 0.000 | 0.000 | 0.000 |
85 | A | 95 | SER | 0 | 0.046 | -0.055 | 28.853 | -0.017 | -0.017 | 0.000 | 0.000 | 0.000 | 0.000 |
86 | A | 96 | ILE | 0 | 0.011 | 0.029 | 24.395 | -0.135 | -0.135 | 0.000 | 0.000 | 0.000 | 0.000 |
87 | A | 97 | LYS | 1 | 0.937 | 0.984 | 24.674 | 9.494 | 9.494 | 0.000 | 0.000 | 0.000 | 0.000 |
88 | A | 98 | ALA | 0 | 0.034 | 0.027 | 26.185 | -0.160 | -0.160 | 0.000 | 0.000 | 0.000 | 0.000 |
89 | A | 99 | THR | 0 | 0.015 | -0.021 | 22.635 | 0.100 | 0.100 | 0.000 | 0.000 | 0.000 | 0.000 |
90 | A | 100 | THR | 0 | -0.035 | -0.030 | 21.475 | -0.764 | -0.764 | 0.000 | 0.000 | 0.000 | 0.000 |
91 | A | 101 | ASP | -1 | -0.923 | -0.969 | 22.473 | -11.913 | -11.913 | 0.000 | 0.000 | 0.000 | 0.000 |
92 | A | 102 | LEU | 0 | -0.049 | -0.025 | 23.084 | -0.174 | -0.174 | 0.000 | 0.000 | 0.000 | 0.000 |
93 | A | 103 | LEU | 0 | -0.043 | -0.019 | 15.994 | -0.666 | -0.666 | 0.000 | 0.000 | 0.000 | 0.000 |
94 | A | 104 | HIS | 0 | -0.015 | -0.008 | 18.669 | -1.323 | -1.323 | 0.000 | 0.000 | 0.000 | 0.000 |
95 | A | 105 | ALA | 0 | -0.023 | 0.000 | 20.544 | -0.085 | -0.085 | 0.000 | 0.000 | 0.000 | 0.000 |
96 | A | 106 | GLY | 0 | -0.022 | 0.008 | 17.245 | -0.349 | -0.349 | 0.000 | 0.000 | 0.000 | 0.000 |
97 | A | 107 | PHE | 0 | -0.051 | -0.023 | 18.117 | 0.170 | 0.170 | 0.000 | 0.000 | 0.000 | 0.000 |
98 | A | 108 | THR | 0 | 0.016 | -0.011 | 13.077 | -0.407 | -0.407 | 0.000 | 0.000 | 0.000 | 0.000 |
99 | A | 109 | GLY | 0 | 0.017 | 0.022 | 12.424 | -0.334 | -0.334 | 0.000 | 0.000 | 0.000 | 0.000 |
100 | A | 110 | VAL | 0 | -0.036 | -0.005 | 13.374 | 0.411 | 0.411 | 0.000 | 0.000 | 0.000 | 0.000 |
101 | A | 111 | LYS | 1 | 0.905 | 0.960 | 14.458 | 19.523 | 19.523 | 0.000 | 0.000 | 0.000 | 0.000 |
102 | A | 112 | ASP | -1 | -0.771 | -0.868 | 18.305 | -14.266 | -14.266 | 0.000 | 0.000 | 0.000 | 0.000 |
103 | A | 113 | ILE | 0 | -0.068 | -0.055 | 21.286 | 0.233 | 0.233 | 0.000 | 0.000 | 0.000 | 0.000 |
104 | A | 114 | VAL | 0 | -0.035 | -0.011 | 24.492 | 0.377 | 0.377 | 0.000 | 0.000 | 0.000 | 0.000 |
105 | A | 115 | GLY | 0 | -0.025 | -0.020 | 27.972 | 0.203 | 0.203 | 0.000 | 0.000 | 0.000 | 0.000 |
106 | A | 116 | GLY | 0 | 0.091 | 0.036 | 28.888 | -0.373 | -0.373 | 0.000 | 0.000 | 0.000 | 0.000 |
107 | A | 117 | TYR | 0 | -0.020 | -0.011 | 30.557 | 0.401 | 0.401 | 0.000 | 0.000 | 0.000 | 0.000 |
108 | A | 118 | SER | 0 | -0.057 | -0.026 | 33.879 | 0.337 | 0.337 | 0.000 | 0.000 | 0.000 | 0.000 |
109 | A | 119 | ALA | 0 | -0.006 | -0.009 | 32.508 | 0.252 | 0.252 | 0.000 | 0.000 | 0.000 | 0.000 |
110 | A | 120 | TRP | 0 | 0.016 | -0.004 | 31.423 | 0.155 | 0.155 | 0.000 | 0.000 | 0.000 | 0.000 |
111 | A | 121 | ALA | 0 | 0.011 | 0.000 | 34.773 | 0.204 | 0.204 | 0.000 | 0.000 | 0.000 | 0.000 |
112 | A | 122 | LYS | 1 | 0.849 | 0.933 | 36.785 | 8.644 | 8.644 | 0.000 | 0.000 | 0.000 | 0.000 |
113 | A | 123 | ASN | 0 | -0.050 | -0.026 | 34.626 | 0.286 | 0.286 | 0.000 | 0.000 | 0.000 | 0.000 |
114 | A | 124 | GLY | 0 | 0.023 | 0.024 | 38.787 | 0.186 | 0.186 | 0.000 | 0.000 | 0.000 | 0.000 |
115 | A | 125 | LEU | 0 | -0.018 | -0.008 | 37.316 | 0.160 | 0.160 | 0.000 | 0.000 | 0.000 | 0.000 |
116 | A | 126 | PRO | 0 | -0.036 | -0.008 | 36.654 | -0.295 | -0.295 | 0.000 | 0.000 | 0.000 | 0.000 |
117 | A | 127 | THR | 0 | -0.041 | -0.117 | 35.221 | 0.311 | 0.311 | 0.000 | 0.000 | 0.000 | 0.000 |
118 | A | 128 | LYS | 1 | 0.803 | 0.910 | 35.605 | 7.732 | 7.732 | 0.000 | 0.000 | 0.000 | 0.000 |
119 | A | 129 | ALA | -1 | -0.865 | -0.916 | 37.574 | -7.745 | -7.745 | 0.000 | 0.000 | 0.000 | 0.000 |