FMODB ID: QL52Y
Calculation Name: 3AK4-A-Xray547
Preferred Name:
Target Type:
Ligand Name: nicotinamide-adenine-dinucleotide
Ligand 3-letter code: NAD
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 3AK4
Chain ID: A
UniProt ID: G1K3P5
Base Structure: X-ray
Registration Date: 2025-10-05
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
| Optimization | MOE:Amber10:EHT |
|---|---|
| Restraint | OptAll |
| Protonation | MOE:Protonate 3D |
| Complement | MOE:Homology Modeling |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE. |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 258 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -3125082.973755 |
|---|---|
| FMO2-HF: Nuclear repulsion | 3028900.038473 |
| FMO2-HF: Total energy | -96182.935283 |
| FMO2-MP2: Total energy | -96459.33105 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:3:GLY)
Summations of interaction energy for
fragment #1(A:3:GLY)
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -129.416 | -122.349 | 7.366 | -8.19 | -6.243 | -0.102 |
Interaction energy analysis for fragmet #1(A:3:GLY)
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | A | 5 | PHE | 0 | 0.007 | -0.015 | 3.503 | 6.769 | 8.201 | -0.004 | -0.671 | -0.757 | -0.003 |
| 4 | A | 6 | ASP | -1 | -0.814 | -0.865 | 2.017 | -105.635 | -100.172 | 7.371 | -7.405 | -5.430 | -0.098 |
| 5 | A | 7 | LEU | 0 | -0.004 | -0.014 | 4.052 | 3.007 | 3.179 | -0.001 | -0.114 | -0.056 | -0.001 |
| 6 | A | 8 | SER | 0 | 0.009 | -0.017 | 5.022 | 7.494 | 7.494 | 0.000 | 0.000 | 0.000 | 0.000 |
| 7 | A | 9 | GLY | 0 | -0.033 | -0.003 | 7.196 | -0.225 | -0.225 | 0.000 | 0.000 | 0.000 | 0.000 |
| 8 | A | 10 | ARG | 1 | 0.816 | 0.906 | 6.422 | 41.044 | 41.044 | 0.000 | 0.000 | 0.000 | 0.000 |
| 9 | A | 11 | LYS | 1 | 0.836 | 0.924 | 11.664 | 21.770 | 21.770 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10 | A | 12 | ALA | 0 | 0.035 | 0.013 | 14.731 | 0.311 | 0.311 | 0.000 | 0.000 | 0.000 | 0.000 |
| 11 | A | 13 | ILE | 0 | 0.010 | 0.010 | 16.658 | 0.752 | 0.752 | 0.000 | 0.000 | 0.000 | 0.000 |
| 12 | A | 14 | VAL | 0 | -0.002 | 0.002 | 19.002 | -0.142 | -0.142 | 0.000 | 0.000 | 0.000 | 0.000 |
| 13 | A | 15 | THR | 0 | 0.008 | -0.006 | 21.457 | 0.530 | 0.530 | 0.000 | 0.000 | 0.000 | 0.000 |
| 14 | A | 16 | GLY | 0 | 0.014 | 0.005 | 25.159 | -0.072 | -0.072 | 0.000 | 0.000 | 0.000 | 0.000 |
| 15 | A | 17 | GLY | 0 | 0.045 | 0.009 | 23.638 | -0.238 | -0.238 | 0.000 | 0.000 | 0.000 | 0.000 |
| 16 | A | 18 | SER | 0 | -0.019 | -0.029 | 24.234 | -0.417 | -0.417 | 0.000 | 0.000 | 0.000 | 0.000 |
| 17 | A | 19 | LYS | 1 | 0.827 | 0.882 | 26.714 | 10.250 | 10.250 | 0.000 | 0.000 | 0.000 | 0.000 |
| 18 | A | 20 | GLY | 0 | 0.009 | 0.011 | 26.524 | -0.105 | -0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
| 19 | A | 21 | ILE | 0 | 0.081 | 0.031 | 22.457 | -0.397 | -0.397 | 0.000 | 0.000 | 0.000 | 0.000 |
| 20 | A | 22 | GLY | 0 | 0.038 | 0.028 | 22.043 | -0.725 | -0.725 | 0.000 | 0.000 | 0.000 | 0.000 |
| 21 | A | 23 | ALA | 0 | -0.015 | 0.001 | 21.610 | -0.604 | -0.604 | 0.000 | 0.000 | 0.000 | 0.000 |
| 22 | A | 24 | ALA | 0 | 0.016 | 0.014 | 20.334 | -0.648 | -0.648 | 0.000 | 0.000 | 0.000 | 0.000 |
| 23 | A | 25 | ILE | 0 | 0.007 | -0.010 | 17.510 | -1.097 | -1.097 | 0.000 | 0.000 | 0.000 | 0.000 |
| 24 | A | 26 | ALA | 0 | -0.014 | -0.007 | 16.668 | -1.233 | -1.233 | 0.000 | 0.000 | 0.000 | 0.000 |
| 25 | A | 27 | ARG | 1 | 0.939 | 0.962 | 16.733 | 13.608 | 13.608 | 0.000 | 0.000 | 0.000 | 0.000 |
| 26 | A | 28 | ALA | 0 | 0.002 | 0.012 | 14.371 | -1.033 | -1.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 27 | A | 29 | LEU | 0 | -0.021 | -0.030 | 12.280 | -2.230 | -2.230 | 0.000 | 0.000 | 0.000 | 0.000 |
| 28 | A | 30 | ASP | -1 | -0.766 | -0.857 | 11.604 | -22.284 | -22.284 | 0.000 | 0.000 | 0.000 | 0.000 |
| 29 | A | 31 | LYS | 1 | 0.957 | 0.987 | 11.881 | 21.890 | 21.890 | 0.000 | 0.000 | 0.000 | 0.000 |
| 30 | A | 32 | ALA | 0 | -0.031 | -0.012 | 8.201 | -2.036 | -2.036 | 0.000 | 0.000 | 0.000 | 0.000 |
| 31 | A | 33 | GLY | 0 | 0.035 | 0.009 | 7.277 | -5.547 | -5.547 | 0.000 | 0.000 | 0.000 | 0.000 |
| 32 | A | 34 | ALA | 0 | -0.031 | -0.004 | 9.129 | 0.416 | 0.416 | 0.000 | 0.000 | 0.000 | 0.000 |
| 33 | A | 35 | THR | 0 | 0.021 | 0.009 | 11.577 | 0.995 | 0.995 | 0.000 | 0.000 | 0.000 | 0.000 |
| 34 | A | 36 | VAL | 0 | -0.021 | -0.010 | 15.083 | 0.152 | 0.152 | 0.000 | 0.000 | 0.000 | 0.000 |
| 35 | A | 37 | ALA | 0 | -0.008 | 0.003 | 17.406 | 0.783 | 0.783 | 0.000 | 0.000 | 0.000 | 0.000 |
| 36 | A | 38 | ILE | 0 | -0.059 | -0.017 | 21.067 | -0.267 | -0.267 | 0.000 | 0.000 | 0.000 | 0.000 |
| 37 | A | 39 | ALA | 0 | 0.024 | 0.007 | 23.570 | 0.463 | 0.463 | 0.000 | 0.000 | 0.000 | 0.000 |
| 38 | A | 40 | ASP | -1 | -0.813 | -0.927 | 26.543 | -11.154 | -11.154 | 0.000 | 0.000 | 0.000 | 0.000 |
| 39 | A | 41 | LEU | 0 | 0.033 | 0.029 | 29.212 | 0.191 | 0.191 | 0.000 | 0.000 | 0.000 | 0.000 |
| 40 | A | 42 | ASP | -1 | -0.811 | -0.881 | 31.736 | -9.427 | -9.427 | 0.000 | 0.000 | 0.000 | 0.000 |
| 41 | A | 43 | VAL | 0 | 0.078 | 0.028 | 30.103 | -0.428 | -0.428 | 0.000 | 0.000 | 0.000 | 0.000 |
| 42 | A | 44 | MET | 0 | 0.002 | 0.013 | 30.548 | -0.149 | -0.149 | 0.000 | 0.000 | 0.000 | 0.000 |
| 43 | A | 45 | ALA | 0 | -0.009 | -0.016 | 29.757 | -0.230 | -0.230 | 0.000 | 0.000 | 0.000 | 0.000 |
| 44 | A | 46 | ALA | 0 | 0.013 | 0.014 | 26.622 | -0.424 | -0.424 | 0.000 | 0.000 | 0.000 | 0.000 |
| 45 | A | 47 | GLN | 0 | -0.010 | -0.019 | 25.872 | -0.418 | -0.418 | 0.000 | 0.000 | 0.000 | 0.000 |
| 46 | A | 48 | ALA | 0 | -0.012 | 0.002 | 26.965 | -0.234 | -0.234 | 0.000 | 0.000 | 0.000 | 0.000 |
| 47 | A | 49 | VAL | 0 | -0.061 | -0.030 | 22.202 | -0.318 | -0.318 | 0.000 | 0.000 | 0.000 | 0.000 |
| 48 | A | 50 | VAL | 0 | 0.017 | -0.002 | 22.050 | -0.534 | -0.534 | 0.000 | 0.000 | 0.000 | 0.000 |
| 49 | A | 51 | ALA | 0 | -0.037 | -0.018 | 22.331 | -0.410 | -0.410 | 0.000 | 0.000 | 0.000 | 0.000 |
| 50 | A | 52 | GLY | 0 | -0.050 | -0.012 | 22.728 | 0.074 | 0.074 | 0.000 | 0.000 | 0.000 | 0.000 |
| 51 | A | 53 | LEU | 0 | -0.072 | -0.025 | 17.861 | -0.387 | -0.387 | 0.000 | 0.000 | 0.000 | 0.000 |
| 52 | A | 54 | GLU | -1 | -0.969 | -0.981 | 13.911 | -21.821 | -21.821 | 0.000 | 0.000 | 0.000 | 0.000 |
| 53 | A | 55 | ASN | 0 | -0.101 | -0.062 | 12.189 | -0.190 | -0.190 | 0.000 | 0.000 | 0.000 | 0.000 |
| 54 | A | 56 | GLY | 0 | -0.006 | -0.001 | 15.581 | 0.281 | 0.281 | 0.000 | 0.000 | 0.000 | 0.000 |
| 55 | A | 57 | GLY | 0 | 0.035 | 0.001 | 18.511 | -0.598 | -0.598 | 0.000 | 0.000 | 0.000 | 0.000 |
| 56 | A | 58 | PHE | 0 | -0.045 | -0.030 | 20.398 | 0.801 | 0.801 | 0.000 | 0.000 | 0.000 | 0.000 |
| 57 | A | 59 | ALA | 0 | 0.036 | 0.028 | 23.631 | -0.298 | -0.298 | 0.000 | 0.000 | 0.000 | 0.000 |
| 58 | A | 60 | VAL | 0 | -0.099 | -0.043 | 26.428 | 0.426 | 0.426 | 0.000 | 0.000 | 0.000 | 0.000 |
| 59 | A | 61 | GLU | -1 | -0.904 | -0.955 | 28.729 | -9.198 | -9.198 | 0.000 | 0.000 | 0.000 | 0.000 |
| 60 | A | 62 | VAL | 0 | -0.058 | -0.042 | 28.926 | -0.023 | -0.023 | 0.000 | 0.000 | 0.000 | 0.000 |
| 61 | A | 63 | ASP | -1 | -0.745 | -0.821 | 31.981 | -8.704 | -8.704 | 0.000 | 0.000 | 0.000 | 0.000 |
| 62 | A | 64 | VAL | 0 | 0.002 | -0.013 | 29.542 | 0.050 | 0.050 | 0.000 | 0.000 | 0.000 | 0.000 |
| 63 | A | 65 | THR | 0 | -0.011 | -0.022 | 32.566 | 0.092 | 0.092 | 0.000 | 0.000 | 0.000 | 0.000 |
| 64 | A | 66 | LYS | 1 | 0.830 | 0.896 | 35.587 | 8.427 | 8.427 | 0.000 | 0.000 | 0.000 | 0.000 |
| 65 | A | 67 | ARG | 1 | 0.922 | 0.951 | 33.470 | 9.134 | 9.134 | 0.000 | 0.000 | 0.000 | 0.000 |
| 66 | A | 68 | ALA | 0 | 0.018 | 0.005 | 34.249 | -0.228 | -0.228 | 0.000 | 0.000 | 0.000 | 0.000 |
| 67 | A | 69 | SER | 0 | 0.004 | 0.023 | 34.318 | -0.112 | -0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
| 68 | A | 70 | VAL | 0 | 0.028 | 0.008 | 29.155 | -0.269 | -0.269 | 0.000 | 0.000 | 0.000 | 0.000 |
| 69 | A | 71 | ASP | -1 | -0.872 | -0.956 | 29.872 | -10.247 | -10.247 | 0.000 | 0.000 | 0.000 | 0.000 |
| 70 | A | 72 | ALA | 0 | -0.024 | -0.004 | 30.503 | -0.260 | -0.260 | 0.000 | 0.000 | 0.000 | 0.000 |
| 71 | A | 73 | ALA | 0 | -0.003 | 0.000 | 29.357 | -0.207 | -0.207 | 0.000 | 0.000 | 0.000 | 0.000 |
| 72 | A | 74 | MET | 0 | -0.025 | -0.017 | 24.123 | -0.304 | -0.304 | 0.000 | 0.000 | 0.000 | 0.000 |
| 73 | A | 75 | GLN | 0 | -0.038 | -0.018 | 25.844 | -0.342 | -0.342 | 0.000 | 0.000 | 0.000 | 0.000 |
| 74 | A | 76 | LYS | 1 | 0.953 | 0.979 | 26.955 | 10.309 | 10.309 | 0.000 | 0.000 | 0.000 | 0.000 |
| 75 | A | 77 | ALA | 0 | 0.003 | -0.008 | 23.504 | -0.175 | -0.175 | 0.000 | 0.000 | 0.000 | 0.000 |
| 76 | A | 78 | ILE | 0 | -0.016 | -0.002 | 22.228 | -0.649 | -0.649 | 0.000 | 0.000 | 0.000 | 0.000 |
| 77 | A | 79 | ASP | -1 | -0.872 | -0.934 | 22.847 | -11.893 | -11.893 | 0.000 | 0.000 | 0.000 | 0.000 |
| 78 | A | 80 | ALA | 0 | -0.071 | -0.031 | 24.277 | -0.121 | -0.121 | 0.000 | 0.000 | 0.000 | 0.000 |
| 79 | A | 81 | LEU | 0 | -0.048 | -0.022 | 17.775 | -0.454 | -0.454 | 0.000 | 0.000 | 0.000 | 0.000 |
| 80 | A | 82 | GLY | 0 | -0.014 | 0.006 | 19.079 | -0.825 | -0.825 | 0.000 | 0.000 | 0.000 | 0.000 |
| 81 | A | 83 | GLY | 0 | -0.018 | -0.015 | 18.498 | -0.405 | -0.405 | 0.000 | 0.000 | 0.000 | 0.000 |
| 82 | A | 84 | PHE | 0 | -0.032 | -0.030 | 18.305 | 0.248 | 0.248 | 0.000 | 0.000 | 0.000 | 0.000 |
| 83 | A | 85 | ASP | -1 | -0.833 | -0.910 | 13.936 | -22.059 | -22.059 | 0.000 | 0.000 | 0.000 | 0.000 |
| 84 | A | 86 | LEU | 0 | -0.034 | -0.021 | 13.330 | -0.235 | -0.235 | 0.000 | 0.000 | 0.000 | 0.000 |
| 85 | A | 87 | LEU | 0 | 0.000 | 0.010 | 16.520 | 0.727 | 0.727 | 0.000 | 0.000 | 0.000 | 0.000 |
| 86 | A | 88 | CYS | 0 | -0.035 | -0.019 | 17.635 | -0.816 | -0.816 | 0.000 | 0.000 | 0.000 | 0.000 |
| 87 | A | 89 | ALA | 0 | 0.009 | 0.007 | 20.200 | 0.506 | 0.506 | 0.000 | 0.000 | 0.000 | 0.000 |
| 88 | A | 90 | ASN | 0 | 0.010 | 0.002 | 23.035 | -0.041 | -0.041 | 0.000 | 0.000 | 0.000 | 0.000 |
| 89 | A | 91 | ALA | 0 | -0.036 | -0.005 | 24.988 | 0.365 | 0.365 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90 | A | 92 | GLY | 0 | 0.014 | -0.010 | 28.561 | -0.011 | -0.011 | 0.000 | 0.000 | 0.000 | 0.000 |
| 91 | A | 93 | VAL | 0 | -0.092 | -0.029 | 31.477 | -0.008 | -0.008 | 0.000 | 0.000 | 0.000 | 0.000 |
| 92 | A | 94 | SER | 0 | -0.006 | -0.038 | 34.933 | -0.045 | -0.045 | 0.000 | 0.000 | 0.000 | 0.000 |
| 93 | A | 95 | THR | 0 | -0.014 | -0.026 | 37.396 | 0.035 | 0.035 | 0.000 | 0.000 | 0.000 | 0.000 |
| 94 | A | 96 | MET | 0 | -0.006 | 0.010 | 40.474 | -0.115 | -0.115 | 0.000 | 0.000 | 0.000 | 0.000 |
| 95 | A | 97 | ARG | 1 | 0.857 | 0.922 | 42.755 | 6.954 | 6.954 | 0.000 | 0.000 | 0.000 | 0.000 |
| 96 | A | 98 | PRO | 0 | 0.034 | 0.020 | 45.552 | -0.130 | -0.130 | 0.000 | 0.000 | 0.000 | 0.000 |
| 97 | A | 99 | ALA | 0 | -0.015 | -0.022 | 46.675 | 0.021 | 0.021 | 0.000 | 0.000 | 0.000 | 0.000 |
| 98 | A | 100 | VAL | 0 | -0.030 | -0.013 | 47.854 | -0.009 | -0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 99 | A | 101 | ASP | -1 | -0.880 | -0.932 | 50.330 | -6.095 | -6.095 | 0.000 | 0.000 | 0.000 | 0.000 |
| 100 | A | 102 | ILE | 0 | -0.069 | -0.027 | 44.673 | -0.065 | -0.065 | 0.000 | 0.000 | 0.000 | 0.000 |
| 101 | A | 103 | THR | 0 | -0.031 | -0.035 | 47.577 | 0.091 | 0.091 | 0.000 | 0.000 | 0.000 | 0.000 |
| 102 | A | 104 | ASP | -1 | -0.876 | -0.951 | 46.816 | -6.676 | -6.676 | 0.000 | 0.000 | 0.000 | 0.000 |
| 103 | A | 105 | GLU | -1 | -0.934 | -0.960 | 45.705 | -6.965 | -6.965 | 0.000 | 0.000 | 0.000 | 0.000 |
| 104 | A | 106 | GLU | -1 | -0.737 | -0.836 | 43.413 | -7.289 | -7.289 | 0.000 | 0.000 | 0.000 | 0.000 |
| 105 | A | 107 | TRP | 0 | 0.009 | 0.012 | 42.034 | -0.300 | -0.300 | 0.000 | 0.000 | 0.000 | 0.000 |
| 106 | A | 108 | ASP | -1 | -0.871 | -0.943 | 41.123 | -7.600 | -7.600 | 0.000 | 0.000 | 0.000 | 0.000 |
| 107 | A | 109 | PHE | 0 | -0.047 | -0.015 | 38.693 | -0.303 | -0.303 | 0.000 | 0.000 | 0.000 | 0.000 |
| 108 | A | 110 | ASN | 0 | -0.019 | -0.030 | 37.471 | -0.469 | -0.469 | 0.000 | 0.000 | 0.000 | 0.000 |
| 109 | A | 111 | PHE | 0 | 0.033 | -0.002 | 36.252 | -0.400 | -0.400 | 0.000 | 0.000 | 0.000 | 0.000 |
| 110 | A | 112 | ASP | -1 | -0.814 | -0.878 | 36.099 | -8.476 | -8.476 | 0.000 | 0.000 | 0.000 | 0.000 |
| 111 | A | 113 | VAL | 0 | -0.038 | -0.022 | 32.227 | -0.262 | -0.262 | 0.000 | 0.000 | 0.000 | 0.000 |
| 112 | A | 114 | ASN | 0 | -0.042 | -0.020 | 31.836 | -0.592 | -0.592 | 0.000 | 0.000 | 0.000 | 0.000 |
| 113 | A | 115 | ALA | 0 | 0.016 | 0.011 | 31.331 | -0.331 | -0.331 | 0.000 | 0.000 | 0.000 | 0.000 |
| 114 | A | 116 | ARG | 1 | 0.783 | 0.869 | 32.422 | 8.022 | 8.022 | 0.000 | 0.000 | 0.000 | 0.000 |
| 115 | A | 117 | GLY | 0 | 0.063 | 0.025 | 31.742 | -0.130 | -0.130 | 0.000 | 0.000 | 0.000 | 0.000 |
| 116 | A | 118 | VAL | 0 | -0.007 | 0.007 | 26.935 | -0.380 | -0.380 | 0.000 | 0.000 | 0.000 | 0.000 |
| 117 | A | 119 | PHE | 0 | -0.014 | -0.008 | 28.256 | -0.279 | -0.279 | 0.000 | 0.000 | 0.000 | 0.000 |
| 118 | A | 120 | LEU | 0 | -0.046 | -0.020 | 30.070 | -0.140 | -0.140 | 0.000 | 0.000 | 0.000 | 0.000 |
| 119 | A | 121 | ALA | 0 | 0.070 | 0.023 | 26.059 | -0.141 | -0.141 | 0.000 | 0.000 | 0.000 | 0.000 |
| 120 | A | 122 | ASN | 0 | 0.013 | -0.001 | 25.042 | -0.562 | -0.562 | 0.000 | 0.000 | 0.000 | 0.000 |
| 121 | A | 123 | GLN | 0 | 0.071 | 0.043 | 26.096 | -0.067 | -0.067 | 0.000 | 0.000 | 0.000 | 0.000 |
| 122 | A | 124 | ILE | 0 | -0.049 | -0.025 | 27.303 | -0.012 | -0.012 | 0.000 | 0.000 | 0.000 | 0.000 |
| 123 | A | 125 | ALA | 0 | 0.020 | 0.014 | 22.399 | -0.151 | -0.151 | 0.000 | 0.000 | 0.000 | 0.000 |
| 124 | A | 126 | CYS | 0 | -0.014 | -0.009 | 23.634 | -0.415 | -0.415 | 0.000 | 0.000 | 0.000 | 0.000 |
| 125 | A | 127 | ARG | 1 | 0.901 | 0.949 | 25.111 | 10.050 | 10.050 | 0.000 | 0.000 | 0.000 | 0.000 |
| 126 | A | 128 | HIS | 0 | 0.031 | 0.022 | 23.743 | -0.099 | -0.099 | 0.000 | 0.000 | 0.000 | 0.000 |
| 127 | A | 129 | PHE | 0 | 0.016 | 0.008 | 18.653 | -0.116 | -0.116 | 0.000 | 0.000 | 0.000 | 0.000 |
| 128 | A | 130 | LEU | 0 | -0.041 | -0.030 | 22.295 | -0.113 | -0.113 | 0.000 | 0.000 | 0.000 | 0.000 |
| 129 | A | 131 | ALA | 0 | -0.033 | -0.002 | 25.171 | 0.201 | 0.201 | 0.000 | 0.000 | 0.000 | 0.000 |
| 130 | A | 132 | SER | 0 | -0.016 | -0.021 | 21.015 | 0.375 | 0.375 | 0.000 | 0.000 | 0.000 | 0.000 |
| 131 | A | 133 | ASN | 0 | -0.085 | -0.034 | 21.692 | -0.240 | -0.240 | 0.000 | 0.000 | 0.000 | 0.000 |
| 132 | A | 134 | THR | 0 | 0.013 | 0.024 | 16.729 | -0.398 | -0.398 | 0.000 | 0.000 | 0.000 | 0.000 |
| 133 | A | 135 | LYS | 1 | 0.876 | 0.944 | 10.146 | 29.613 | 29.613 | 0.000 | 0.000 | 0.000 | 0.000 |
| 134 | A | 136 | GLY | 0 | 0.015 | 0.008 | 15.164 | -1.310 | -1.310 | 0.000 | 0.000 | 0.000 | 0.000 |
| 135 | A | 137 | VAL | 0 | -0.062 | -0.030 | 13.728 | 0.114 | 0.114 | 0.000 | 0.000 | 0.000 | 0.000 |
| 136 | A | 138 | ILE | 0 | 0.022 | 0.007 | 16.958 | 0.426 | 0.426 | 0.000 | 0.000 | 0.000 | 0.000 |
| 137 | A | 139 | VAL | 0 | -0.022 | -0.006 | 16.739 | -0.120 | -0.120 | 0.000 | 0.000 | 0.000 | 0.000 |
| 138 | A | 140 | ASN | 0 | 0.018 | 0.005 | 19.928 | 0.198 | 0.198 | 0.000 | 0.000 | 0.000 | 0.000 |
| 139 | A | 141 | THR | 0 | 0.010 | -0.011 | 23.425 | -0.419 | -0.419 | 0.000 | 0.000 | 0.000 | 0.000 |
| 140 | A | 142 | ALA | 0 | 0.003 | 0.004 | 24.950 | 0.605 | 0.605 | 0.000 | 0.000 | 0.000 | 0.000 |
| 141 | A | 143 | SER | 0 | 0.039 | -0.002 | 27.559 | 0.154 | 0.154 | 0.000 | 0.000 | 0.000 | 0.000 |
| 142 | A | 144 | LEU | 0 | 0.060 | 0.044 | 29.041 | -0.063 | -0.063 | 0.000 | 0.000 | 0.000 | 0.000 |
| 143 | A | 145 | ALA | 0 | 0.004 | -0.010 | 30.231 | 0.195 | 0.195 | 0.000 | 0.000 | 0.000 | 0.000 |
| 144 | A | 146 | ALA | 0 | -0.024 | -0.015 | 29.642 | 0.209 | 0.209 | 0.000 | 0.000 | 0.000 | 0.000 |
| 145 | A | 147 | LYS | 1 | 0.745 | 0.853 | 26.206 | 11.581 | 11.581 | 0.000 | 0.000 | 0.000 | 0.000 |
| 146 | A | 148 | VAL | 0 | -0.022 | -0.017 | 32.216 | 0.231 | 0.231 | 0.000 | 0.000 | 0.000 | 0.000 |
| 147 | A | 149 | GLY | 0 | -0.005 | 0.005 | 35.614 | -0.109 | -0.109 | 0.000 | 0.000 | 0.000 | 0.000 |
| 148 | A | 150 | ALA | 0 | 0.030 | 0.016 | 36.817 | 0.115 | 0.115 | 0.000 | 0.000 | 0.000 | 0.000 |
| 149 | A | 151 | PRO | 0 | 0.021 | 0.000 | 38.819 | 0.122 | 0.122 | 0.000 | 0.000 | 0.000 | 0.000 |
| 150 | A | 152 | LEU | 0 | -0.001 | -0.002 | 41.440 | -0.105 | -0.105 | 0.000 | 0.000 | 0.000 | 0.000 |
| 151 | A | 153 | LEU | 0 | 0.059 | 0.038 | 36.896 | -0.022 | -0.022 | 0.000 | 0.000 | 0.000 | 0.000 |
| 152 | A | 154 | ALA | 0 | 0.027 | 0.032 | 39.189 | -0.221 | -0.221 | 0.000 | 0.000 | 0.000 | 0.000 |
| 153 | A | 155 | HIS | 0 | 0.006 | 0.005 | 40.274 | -0.169 | -0.169 | 0.000 | 0.000 | 0.000 | 0.000 |
| 154 | A | 156 | TYR | 0 | 0.026 | 0.022 | 32.001 | -0.271 | -0.271 | 0.000 | 0.000 | 0.000 | 0.000 |
| 155 | A | 157 | SER | 0 | 0.021 | -0.003 | 35.587 | -0.318 | -0.318 | 0.000 | 0.000 | 0.000 | 0.000 |
| 156 | A | 158 | ALA | 0 | -0.018 | 0.005 | 35.563 | -0.247 | -0.247 | 0.000 | 0.000 | 0.000 | 0.000 |
| 157 | A | 159 | SER | 0 | -0.037 | -0.020 | 35.790 | -0.220 | -0.220 | 0.000 | 0.000 | 0.000 | 0.000 |
| 158 | A | 160 | LYS | 1 | 0.895 | 0.942 | 28.991 | 10.489 | 10.489 | 0.000 | 0.000 | 0.000 | 0.000 |
| 159 | A | 161 | PHE | 0 | -0.004 | -0.012 | 31.314 | -0.370 | -0.370 | 0.000 | 0.000 | 0.000 | 0.000 |
| 160 | A | 162 | ALA | 0 | -0.027 | 0.000 | 32.630 | -0.201 | -0.201 | 0.000 | 0.000 | 0.000 | 0.000 |
| 161 | A | 163 | VAL | 0 | -0.002 | 0.014 | 27.426 | -0.205 | -0.205 | 0.000 | 0.000 | 0.000 | 0.000 |
| 162 | A | 164 | PHE | 0 | 0.030 | 0.026 | 26.508 | -0.457 | -0.457 | 0.000 | 0.000 | 0.000 | 0.000 |
| 163 | A | 165 | GLY | 0 | 0.013 | 0.003 | 28.903 | -0.215 | -0.215 | 0.000 | 0.000 | 0.000 | 0.000 |
| 164 | A | 166 | TRP | 0 | -0.013 | -0.022 | 27.447 | 0.153 | 0.153 | 0.000 | 0.000 | 0.000 | 0.000 |
| 165 | A | 167 | THR | 0 | -0.010 | -0.021 | 24.082 | -0.368 | -0.368 | 0.000 | 0.000 | 0.000 | 0.000 |
| 166 | A | 168 | GLN | 0 | -0.046 | -0.024 | 26.151 | -0.225 | -0.225 | 0.000 | 0.000 | 0.000 | 0.000 |
| 167 | A | 169 | ALA | 0 | -0.034 | -0.009 | 27.973 | -0.055 | -0.055 | 0.000 | 0.000 | 0.000 | 0.000 |
| 168 | A | 170 | LEU | 0 | 0.049 | 0.018 | 25.463 | -0.085 | -0.085 | 0.000 | 0.000 | 0.000 | 0.000 |
| 169 | A | 171 | ALA | 0 | 0.010 | 0.009 | 23.851 | -0.285 | -0.285 | 0.000 | 0.000 | 0.000 | 0.000 |
| 170 | A | 172 | ARG | 1 | 0.901 | 0.947 | 24.740 | 10.777 | 10.777 | 0.000 | 0.000 | 0.000 | 0.000 |
| 171 | A | 173 | GLU | -1 | -0.943 | -0.964 | 27.441 | -10.339 | -10.339 | 0.000 | 0.000 | 0.000 | 0.000 |
| 172 | A | 174 | MET | 0 | -0.025 | -0.014 | 23.179 | -0.112 | -0.112 | 0.000 | 0.000 | 0.000 | 0.000 |
| 173 | A | 175 | ALA | 0 | 0.035 | 0.033 | 22.055 | -0.490 | -0.490 | 0.000 | 0.000 | 0.000 | 0.000 |
| 174 | A | 176 | PRO | 0 | -0.056 | -0.038 | 22.588 | -0.450 | -0.450 | 0.000 | 0.000 | 0.000 | 0.000 |
| 175 | A | 177 | LYS | 1 | 0.895 | 0.948 | 23.703 | 11.992 | 11.992 | 0.000 | 0.000 | 0.000 | 0.000 |
| 176 | A | 178 | ASN | 0 | -0.029 | -0.006 | 16.597 | -0.829 | -0.829 | 0.000 | 0.000 | 0.000 | 0.000 |
| 177 | A | 179 | ILE | 0 | 0.029 | 0.028 | 18.329 | -0.892 | -0.892 | 0.000 | 0.000 | 0.000 | 0.000 |
| 178 | A | 180 | ARG | 1 | 0.766 | 0.892 | 12.818 | 22.988 | 22.988 | 0.000 | 0.000 | 0.000 | 0.000 |
| 179 | A | 181 | VAL | 0 | 0.039 | 0.012 | 19.082 | -0.188 | -0.188 | 0.000 | 0.000 | 0.000 | 0.000 |
| 180 | A | 182 | ASN | 0 | -0.032 | -0.033 | 18.119 | 0.721 | 0.721 | 0.000 | 0.000 | 0.000 | 0.000 |
| 181 | A | 183 | CYS | 0 | -0.058 | 0.004 | 21.123 | 0.345 | 0.345 | 0.000 | 0.000 | 0.000 | 0.000 |
| 182 | A | 184 | VAL | 0 | 0.051 | 0.035 | 19.420 | -0.257 | -0.257 | 0.000 | 0.000 | 0.000 | 0.000 |
| 183 | A | 185 | CYS | 0 | -0.051 | -0.025 | 22.367 | 0.644 | 0.644 | 0.000 | 0.000 | 0.000 | 0.000 |
| 184 | A | 186 | PRO | 0 | 0.035 | 0.012 | 23.947 | 0.033 | 0.033 | 0.000 | 0.000 | 0.000 | 0.000 |
| 185 | A | 187 | GLY | 0 | 0.039 | 0.028 | 25.817 | 0.470 | 0.470 | 0.000 | 0.000 | 0.000 | 0.000 |
| 186 | A | 188 | PHE | 0 | 0.012 | 0.016 | 28.511 | 0.067 | 0.067 | 0.000 | 0.000 | 0.000 | 0.000 |
| 187 | A | 189 | VAL | 0 | -0.015 | -0.015 | 25.692 | 0.048 | 0.048 | 0.000 | 0.000 | 0.000 | 0.000 |
| 188 | A | 190 | LYS | 1 | 0.838 | 0.901 | 28.381 | 11.035 | 11.035 | 0.000 | 0.000 | 0.000 | 0.000 |
| 189 | A | 191 | THR | 0 | -0.009 | -0.014 | 28.106 | -0.252 | -0.252 | 0.000 | 0.000 | 0.000 | 0.000 |
| 190 | A | 192 | ALA | 0 | 0.034 | -0.001 | 30.838 | 0.277 | 0.277 | 0.000 | 0.000 | 0.000 | 0.000 |
| 191 | A | 193 | MET | 0 | -0.076 | -0.017 | 32.203 | 0.174 | 0.174 | 0.000 | 0.000 | 0.000 | 0.000 |
| 192 | A | 194 | GLN | 0 | 0.087 | 0.048 | 31.646 | 0.409 | 0.409 | 0.000 | 0.000 | 0.000 | 0.000 |
| 193 | A | 195 | GLU | -1 | -0.811 | -0.885 | 34.644 | -8.704 | -8.704 | 0.000 | 0.000 | 0.000 | 0.000 |
| 194 | A | 196 | ARG | 1 | 0.883 | 0.963 | 34.719 | 9.126 | 9.126 | 0.000 | 0.000 | 0.000 | 0.000 |
| 195 | A | 197 | GLU | -1 | -0.820 | -0.891 | 35.277 | -8.849 | -8.849 | 0.000 | 0.000 | 0.000 | 0.000 |
| 196 | A | 198 | ILE | 0 | 0.043 | 0.013 | 37.316 | 0.210 | 0.210 | 0.000 | 0.000 | 0.000 | 0.000 |
| 197 | A | 199 | ILE | 0 | -0.027 | -0.013 | 40.060 | 0.237 | 0.237 | 0.000 | 0.000 | 0.000 | 0.000 |
| 198 | A | 200 | TRP | 0 | 0.001 | -0.012 | 39.067 | 0.092 | 0.092 | 0.000 | 0.000 | 0.000 | 0.000 |
| 199 | A | 201 | GLU | -1 | -0.794 | -0.873 | 40.086 | -7.750 | -7.750 | 0.000 | 0.000 | 0.000 | 0.000 |
| 200 | A | 202 | ALA | 0 | -0.036 | -0.015 | 43.544 | 0.141 | 0.141 | 0.000 | 0.000 | 0.000 | 0.000 |
| 201 | A | 203 | GLU | -1 | -0.959 | -0.973 | 45.641 | -6.359 | -6.359 | 0.000 | 0.000 | 0.000 | 0.000 |
| 202 | A | 204 | LEU | 0 | -0.049 | -0.036 | 44.961 | 0.137 | 0.137 | 0.000 | 0.000 | 0.000 | 0.000 |
| 203 | A | 205 | ARG | 1 | 0.730 | 0.820 | 42.108 | 7.434 | 7.434 | 0.000 | 0.000 | 0.000 | 0.000 |
| 204 | A | 206 | GLY | 0 | -0.014 | 0.017 | 48.336 | 0.088 | 0.088 | 0.000 | 0.000 | 0.000 | 0.000 |
| 205 | A | 207 | MET | 0 | -0.081 | -0.030 | 43.854 | 0.052 | 0.052 | 0.000 | 0.000 | 0.000 | 0.000 |
| 206 | A | 208 | THR | 0 | 0.019 | -0.005 | 45.857 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 207 | A | 209 | PRO | 0 | 0.069 | 0.018 | 42.074 | -0.075 | -0.075 | 0.000 | 0.000 | 0.000 | 0.000 |
| 208 | A | 210 | GLU | -1 | -0.793 | -0.873 | 39.128 | -8.345 | -8.345 | 0.000 | 0.000 | 0.000 | 0.000 |
| 209 | A | 211 | ALA | 0 | -0.033 | 0.000 | 40.911 | -0.109 | -0.109 | 0.000 | 0.000 | 0.000 | 0.000 |
| 210 | A | 212 | VAL | 0 | 0.013 | 0.015 | 39.434 | -0.069 | -0.069 | 0.000 | 0.000 | 0.000 | 0.000 |
| 211 | A | 213 | ARG | 1 | 0.700 | 0.783 | 34.746 | 8.567 | 8.567 | 0.000 | 0.000 | 0.000 | 0.000 |
| 212 | A | 214 | ALA | 0 | -0.009 | -0.012 | 36.635 | -0.238 | -0.238 | 0.000 | 0.000 | 0.000 | 0.000 |
| 213 | A | 215 | GLU | -1 | -0.821 | -0.867 | 38.196 | -7.660 | -7.660 | 0.000 | 0.000 | 0.000 | 0.000 |
| 214 | A | 216 | TYR | 0 | -0.015 | -0.032 | 34.254 | -0.235 | -0.235 | 0.000 | 0.000 | 0.000 | 0.000 |
| 215 | A | 217 | VAL | 0 | -0.017 | 0.004 | 33.030 | -0.244 | -0.244 | 0.000 | 0.000 | 0.000 | 0.000 |
| 216 | A | 218 | SER | 0 | -0.093 | -0.052 | 34.401 | -0.051 | -0.051 | 0.000 | 0.000 | 0.000 | 0.000 |
| 217 | A | 219 | LEU | 0 | 0.001 | 0.001 | 35.605 | 0.037 | 0.037 | 0.000 | 0.000 | 0.000 | 0.000 |
| 218 | A | 220 | THR | 0 | -0.039 | -0.022 | 29.533 | -0.305 | -0.305 | 0.000 | 0.000 | 0.000 | 0.000 |
| 219 | A | 221 | PRO | 0 | -0.048 | -0.017 | 29.675 | 0.009 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 220 | A | 222 | LEU | 0 | -0.041 | -0.020 | 24.363 | -0.029 | -0.029 | 0.000 | 0.000 | 0.000 | 0.000 |
| 221 | A | 223 | GLY | 0 | -0.012 | 0.000 | 28.735 | -0.128 | -0.128 | 0.000 | 0.000 | 0.000 | 0.000 |
| 222 | A | 224 | ARG | 1 | 0.734 | 0.834 | 22.969 | 12.752 | 12.752 | 0.000 | 0.000 | 0.000 | 0.000 |
| 223 | A | 225 | ILE | 0 | 0.002 | 0.014 | 29.592 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
| 224 | A | 226 | GLU | -1 | -0.832 | -0.919 | 24.354 | -12.737 | -12.737 | 0.000 | 0.000 | 0.000 | 0.000 |
| 225 | A | 227 | GLU | -1 | -0.793 | -0.893 | 23.796 | -10.853 | -10.853 | 0.000 | 0.000 | 0.000 | 0.000 |
| 226 | A | 228 | PRO | 0 | -0.012 | -0.024 | 23.473 | -0.394 | -0.394 | 0.000 | 0.000 | 0.000 | 0.000 |
| 227 | A | 229 | GLU | -1 | -0.876 | -0.962 | 19.074 | -14.516 | -14.516 | 0.000 | 0.000 | 0.000 | 0.000 |
| 228 | A | 230 | ASP | -1 | -0.779 | -0.837 | 18.495 | -14.512 | -14.512 | 0.000 | 0.000 | 0.000 | 0.000 |
| 229 | A | 231 | VAL | 0 | -0.009 | -0.006 | 19.107 | -0.540 | -0.540 | 0.000 | 0.000 | 0.000 | 0.000 |
| 230 | A | 232 | ALA | 0 | -0.005 | 0.004 | 17.476 | -0.708 | -0.708 | 0.000 | 0.000 | 0.000 | 0.000 |
| 231 | A | 233 | ASP | -1 | -0.846 | -0.924 | 13.707 | -21.868 | -21.868 | 0.000 | 0.000 | 0.000 | 0.000 |
| 232 | A | 234 | VAL | 0 | -0.042 | -0.020 | 13.309 | -1.671 | -1.671 | 0.000 | 0.000 | 0.000 | 0.000 |
| 233 | A | 235 | VAL | 0 | -0.001 | -0.005 | 15.206 | -0.524 | -0.524 | 0.000 | 0.000 | 0.000 | 0.000 |
| 234 | A | 236 | VAL | 0 | 0.020 | 0.015 | 9.784 | -0.978 | -0.978 | 0.000 | 0.000 | 0.000 | 0.000 |
| 235 | A | 237 | PHE | 0 | -0.010 | -0.010 | 10.356 | -2.398 | -2.398 | 0.000 | 0.000 | 0.000 | 0.000 |
| 236 | A | 238 | LEU | 0 | -0.002 | 0.004 | 11.547 | -1.312 | -1.312 | 0.000 | 0.000 | 0.000 | 0.000 |
| 237 | A | 239 | ALA | 0 | 0.057 | 0.032 | 12.298 | 0.384 | 0.384 | 0.000 | 0.000 | 0.000 | 0.000 |
| 238 | A | 240 | SER | 0 | -0.077 | -0.032 | 7.554 | -2.312 | -2.312 | 0.000 | 0.000 | 0.000 | 0.000 |
| 239 | A | 241 | ASP | -1 | -0.788 | -0.872 | 7.038 | -33.009 | -33.009 | 0.000 | 0.000 | 0.000 | 0.000 |
| 240 | A | 242 | ALA | 0 | -0.033 | -0.016 | 7.508 | 1.286 | 1.286 | 0.000 | 0.000 | 0.000 | 0.000 |
| 241 | A | 243 | ALA | 0 | 0.031 | 0.029 | 9.107 | 2.480 | 2.480 | 0.000 | 0.000 | 0.000 | 0.000 |
| 242 | A | 244 | ARG | 1 | 0.890 | 0.931 | 9.114 | 30.961 | 30.961 | 0.000 | 0.000 | 0.000 | 0.000 |
| 243 | A | 245 | PHE | 0 | -0.019 | -0.011 | 13.096 | 1.143 | 1.143 | 0.000 | 0.000 | 0.000 | 0.000 |
| 244 | A | 246 | MET | 0 | -0.011 | 0.011 | 15.969 | 0.750 | 0.750 | 0.000 | 0.000 | 0.000 | 0.000 |
| 245 | A | 247 | THR | 0 | 0.058 | 0.028 | 17.619 | -0.700 | -0.700 | 0.000 | 0.000 | 0.000 | 0.000 |
| 246 | A | 248 | GLY | 0 | 0.018 | 0.006 | 20.491 | 0.437 | 0.437 | 0.000 | 0.000 | 0.000 | 0.000 |
| 247 | A | 249 | GLN | 0 | -0.053 | -0.028 | 20.489 | 0.801 | 0.801 | 0.000 | 0.000 | 0.000 | 0.000 |
| 248 | A | 250 | GLY | 0 | 0.078 | 0.019 | 22.859 | -0.146 | -0.146 | 0.000 | 0.000 | 0.000 | 0.000 |
| 249 | A | 251 | ILE | 0 | -0.024 | -0.008 | 18.748 | 0.344 | 0.344 | 0.000 | 0.000 | 0.000 | 0.000 |
| 250 | A | 252 | ASN | 0 | -0.017 | -0.012 | 22.064 | 0.192 | 0.192 | 0.000 | 0.000 | 0.000 | 0.000 |
| 251 | A | 253 | VAL | 0 | -0.033 | -0.010 | 20.246 | -0.483 | -0.483 | 0.000 | 0.000 | 0.000 | 0.000 |
| 252 | A | 254 | THR | 0 | 0.070 | 0.021 | 23.012 | 0.328 | 0.328 | 0.000 | 0.000 | 0.000 | 0.000 |
| 253 | A | 255 | GLY | 0 | 0.048 | 0.025 | 25.040 | 0.406 | 0.406 | 0.000 | 0.000 | 0.000 | 0.000 |
| 254 | A | 256 | GLY | 0 | 0.008 | -0.001 | 26.468 | 0.249 | 0.249 | 0.000 | 0.000 | 0.000 | 0.000 |
| 255 | A | 257 | VAL | 0 | -0.012 | -0.001 | 28.139 | 0.243 | 0.243 | 0.000 | 0.000 | 0.000 | 0.000 |
| 256 | A | 258 | ARG | 1 | 0.789 | 0.880 | 29.081 | 10.266 | 10.266 | 0.000 | 0.000 | 0.000 | 0.000 |
| 257 | A | 259 | MET | 0 | -0.057 | -0.033 | 27.409 | -0.439 | -0.439 | 0.000 | 0.000 | 0.000 | 0.000 |
| 258 | A | 260 | ASP | -2 | -1.640 | -1.774 | 25.750 | -22.344 | -22.344 | 0.000 | 0.000 | 0.000 | 0.000 |