FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

tag_button

FMODB ID: QMMLY

Calculation Name: 4AQZ-A-Other547

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4AQZ

Chain ID: A

ChEMBL ID:

UniProt ID: Q70M91

Base Structure: SolutionNMR

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 138
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1041657.835708
FMO2-HF: Nuclear repulsion 988551.124675
FMO2-HF: Total energy -53106.711033
FMO2-MP2: Total energy -53261.898517


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:192:MET)


Summations of interaction energy for fragment #1(A:192:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
72.25574.172-0.012-0.775-1.1310.001
Interaction energy analysis for fragmet #1(A:192:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.903 / q_NPA : 0.942
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A194SER00.0120.0133.854-3.866-2.401-0.014-0.660-0.7910.001
5A196HIS0-0.009-0.0033.35910.49310.9450.002-0.115-0.3400.000
4A195SER00.0710.0236.8671.0051.0050.0000.0000.0000.000
6A197HIS10.8800.9358.58526.90726.9070.0000.0000.0000.000
7A198HIS00.0030.01711.3010.9120.9120.0000.0000.0000.000
8A199HIS00.0450.02313.0911.1131.1130.0000.0000.0000.000
9A200HIS0-0.003-0.00312.4000.7880.7880.0000.0000.0000.000
10A201HIS00.0210.00413.894-1.428-1.4280.0000.0000.0000.000
11A202GLY00.0220.01415.293-0.449-0.4490.0000.0000.0000.000
12A203LEU0-0.032-0.00716.0130.6080.6080.0000.0000.0000.000
13A204VAL00.0140.00816.790-0.409-0.4090.0000.0000.0000.000
14A205PRO00.0020.00719.3270.7730.7730.0000.0000.0000.000
15A206ARG10.9670.97021.74711.32011.3200.0000.0000.0000.000
16A207GLY00.0230.01424.4220.4590.4590.0000.0000.0000.000
17A208SER0-0.014-0.01526.821-0.208-0.2080.0000.0000.0000.000
18A209HIS00.0580.02729.5410.3870.3870.0000.0000.0000.000
19A210MET0-0.055-0.02531.4390.1950.1950.0000.0000.0000.000
20A211ALA00.0370.01533.967-0.061-0.0610.0000.0000.0000.000
21A212SER0-0.024-0.01136.9730.1940.1940.0000.0000.0000.000
22A213MET00.0250.01239.8530.0300.0300.0000.0000.0000.000
23A214THR0-0.023-0.00341.3410.1480.1480.0000.0000.0000.000
24A215GLY00.003-0.00643.8430.0300.0300.0000.0000.0000.000
25A216GLY00.0070.00647.440-0.022-0.0220.0000.0000.0000.000
26A217GLN0-0.026-0.00450.6560.1420.1420.0000.0000.0000.000
27A218GLN00.0060.00551.977-0.051-0.0510.0000.0000.0000.000
28A219MET00.006-0.01151.997-0.051-0.0510.0000.0000.0000.000
29A220GLY00.0200.01054.6350.0180.0180.0000.0000.0000.000
30A221ARG10.9360.97658.3964.9994.9990.0000.0000.0000.000
31A222GLY00.0510.03061.7700.0210.0210.0000.0000.0000.000
32A223SER0-0.030-0.01857.5740.0220.0220.0000.0000.0000.000
33A224LYS10.9530.96658.7415.2985.2980.0000.0000.0000.000
34A225GLN00.0420.02958.525-0.150-0.1500.0000.0000.0000.000
35A226THR0-0.031-0.03261.0010.0370.0370.0000.0000.0000.000
36A227ASN0-0.061-0.02663.9520.1070.1070.0000.0000.0000.000
37A228ILE00.0360.01567.241-0.015-0.0150.0000.0000.0000.000
38A229ASP-1-0.878-0.94170.597-4.425-4.4250.0000.0000.0000.000
39A230PHE0-0.004-0.01073.1560.0160.0160.0000.0000.0000.000
40A231ARG10.9070.96073.1674.3874.3870.0000.0000.0000.000
41A232LYS10.8300.91078.6573.8053.8050.0000.0000.0000.000
42A233ASP-1-0.863-0.94479.147-4.140-4.1400.0000.0000.0000.000
43A234GLY0-0.0020.00381.3040.0430.0430.0000.0000.0000.000
44A235LYS10.9420.96383.7863.6343.6340.0000.0000.0000.000
45A236ASN0-0.0060.00186.813-0.012-0.0120.0000.0000.0000.000
46A237ALA00.0560.04382.2300.0140.0140.0000.0000.0000.000
47A238GLY00.0160.00381.8290.0010.0010.0000.0000.0000.000
48A239ILE0-0.049-0.02275.687-0.024-0.0240.0000.0000.0000.000
49A240ILE00.0210.01973.358-0.006-0.0060.0000.0000.0000.000
50A241GLU-1-0.889-0.92570.437-4.586-4.5860.0000.0000.0000.000
51A242LEU0-0.005-0.00967.3220.0150.0150.0000.0000.0000.000
52A243ALA0-0.0010.00964.220-0.054-0.0540.0000.0000.0000.000
53A244ALA00.0440.01963.730-0.016-0.0160.0000.0000.0000.000
54A245LEU0-0.039-0.02558.639-0.067-0.0670.0000.0000.0000.000
55A246GLY00.0600.02456.809-0.031-0.0310.0000.0000.0000.000
56A247PHE0-0.057-0.01657.746-0.040-0.0400.0000.0000.0000.000
57A248ALA00.011-0.00857.3010.0680.0680.0000.0000.0000.000
58A249GLY00.0270.01259.311-0.050-0.0500.0000.0000.0000.000
59A250GLN0-0.019-0.02962.2850.0880.0880.0000.0000.0000.000
60A251PRO0-0.052-0.02166.118-0.031-0.0310.0000.0000.0000.000
61A252ASP-1-0.920-0.93768.064-4.474-4.4740.0000.0000.0000.000
62A253ILE00.001-0.01870.7930.0110.0110.0000.0000.0000.000
63A254SER00.0220.02773.9940.0530.0530.0000.0000.0000.000
64A255GLN00.019-0.00977.3220.0400.0400.0000.0000.0000.000
65A256GLN00.0230.00680.3580.0050.0050.0000.0000.0000.000
66A257HIS00.0390.01283.702-0.024-0.0240.0000.0000.0000.000
67A258ASP-1-0.834-0.87085.306-3.804-3.8040.0000.0000.0000.000
68A259HIS10.8600.89979.5453.9843.9840.0000.0000.0000.000
69A260ILE00.0110.01977.116-0.009-0.0090.0000.0000.0000.000
70A261ILE0-0.033-0.01374.449-0.013-0.0130.0000.0000.0000.000
71A262VAL00.0000.00570.443-0.018-0.0180.0000.0000.0000.000
72A263THR0-0.022-0.02468.363-0.003-0.0030.0000.0000.0000.000
73A264LEU0-0.013-0.00364.952-0.033-0.0330.0000.0000.0000.000
74A265LYS10.8990.92464.3414.7734.7730.0000.0000.0000.000
75A266ASN0-0.011-0.00757.347-0.065-0.0650.0000.0000.0000.000
76A267HIS00.0410.03659.950-0.029-0.0290.0000.0000.0000.000
77A268THR0-0.026-0.00861.0320.0730.0730.0000.0000.0000.000
78A269LEU00.0070.01862.261-0.053-0.0530.0000.0000.0000.000
79A270PRO00.0110.00061.5770.0390.0390.0000.0000.0000.000
80A271THR00.0540.01364.2530.0850.0850.0000.0000.0000.000
81A272THR0-0.009-0.00864.1750.0750.0750.0000.0000.0000.000
82A273LEU00.0050.00663.1130.0140.0140.0000.0000.0000.000
83A274GLN0-0.028-0.00167.6480.0690.0690.0000.0000.0000.000
84A275ARG10.8880.93970.6344.5364.5360.0000.0000.0000.000
85A276SER00.004-0.00873.3670.0060.0060.0000.0000.0000.000
86A277LEU0-0.039-0.02175.3380.0050.0050.0000.0000.0000.000
87A278ASP-1-0.824-0.93378.871-3.824-3.8240.0000.0000.0000.000
88A279VAL0-0.028-0.01780.6610.0160.0160.0000.0000.0000.000
89A280ALA00.0830.05683.7070.0260.0260.0000.0000.0000.000
90A281ASP-1-0.832-0.91287.398-3.555-3.5550.0000.0000.0000.000
91A282PHE00.0320.01682.7120.0080.0080.0000.0000.0000.000
92A283LYS10.8030.90087.2073.5443.5440.0000.0000.0000.000
93A284THR0-0.003-0.00583.962-0.040-0.0400.0000.0000.0000.000
94A285PRO00.0100.00984.6180.0320.0320.0000.0000.0000.000
95A286VAL0-0.041-0.01480.947-0.009-0.0090.0000.0000.0000.000
96A287GLN00.0070.00084.1720.0090.0090.0000.0000.0000.000
97A288LYS10.8780.94580.7293.9033.9030.0000.0000.0000.000
98A289VAL00.0280.02775.856-0.028-0.0280.0000.0000.0000.000
99A290THR0-0.040-0.02976.0280.0170.0170.0000.0000.0000.000
100A291LEU00.0120.03269.028-0.026-0.0260.0000.0000.0000.000
101A292LYS10.8820.94172.2454.3914.3910.0000.0000.0000.000
102A293ARG10.8800.94664.1324.8954.8950.0000.0000.0000.000
103A294LEU00.0240.01468.1390.0700.0700.0000.0000.0000.000
104A295ASN0-0.013-0.00264.666-0.016-0.0160.0000.0000.0000.000
105A296ASN00.0760.01660.4660.0030.0030.0000.0000.0000.000
106A297ASP-1-0.774-0.85662.969-5.013-5.0130.0000.0000.0000.000
107A298THR0-0.028-0.02665.0120.0310.0310.0000.0000.0000.000
108A299GLN0-0.009-0.00567.4590.0540.0540.0000.0000.0000.000
109A300LEU0-0.038-0.01371.196-0.004-0.0040.0000.0000.0000.000
110A301ILE00.0150.01173.5870.0220.0220.0000.0000.0000.000
111A302ILE0-0.014-0.00875.3520.0060.0060.0000.0000.0000.000
112A303THR00.007-0.00479.1450.0240.0240.0000.0000.0000.000
113A304THR0-0.037-0.03482.639-0.023-0.0230.0000.0000.0000.000
114A305ALA00.0300.00785.3120.0290.0290.0000.0000.0000.000
115A306GLY0-0.0030.01689.0290.0010.0010.0000.0000.0000.000
116A307ASN00.0130.00689.349-0.055-0.0550.0000.0000.0000.000
117A308TRP0-0.015-0.01380.327-0.013-0.0130.0000.0000.0000.000
118A309GLU-1-0.859-0.92383.699-3.774-3.7740.0000.0000.0000.000
119A310LEU0-0.0150.01076.463-0.022-0.0220.0000.0000.0000.000
120A311VAL0-0.0010.00276.159-0.013-0.0130.0000.0000.0000.000
121A312ASN00.0030.00071.6050.0290.0290.0000.0000.0000.000
122A313LYS10.9250.96671.0774.3514.3510.0000.0000.0000.000
123A314SER00.0340.01565.511-0.006-0.0060.0000.0000.0000.000
124A315ALA0-0.031-0.00466.0810.0130.0130.0000.0000.0000.000
125A316ALA0-0.001-0.00760.617-0.065-0.0650.0000.0000.0000.000
126A317PRO00.0220.01858.1490.0750.0750.0000.0000.0000.000
127A318GLY00.0540.03659.944-0.078-0.0780.0000.0000.0000.000
128A319TYR0-0.076-0.04461.0230.0240.0240.0000.0000.0000.000
129A320PHE00.0440.01663.9850.0110.0110.0000.0000.0000.000
130A321THR0-0.015-0.01368.1590.0090.0090.0000.0000.0000.000
131A322PHE00.0210.00270.757-0.006-0.0060.0000.0000.0000.000
132A323GLN0-0.0070.00275.1680.0040.0040.0000.0000.0000.000
133A324VAL00.0230.01778.0250.0130.0130.0000.0000.0000.000
134A325LEU00.0250.00781.1500.0330.0330.0000.0000.0000.000
135A326PRO00.0430.01384.2510.0080.0080.0000.0000.0000.000
136A327LYS10.8400.90486.2373.7543.7540.0000.0000.0000.000
137A328LYS10.8430.90488.3463.7093.7090.0000.0000.0000.000
138A329GLN-1-0.881-0.92492.622-3.417-3.4170.0000.0000.0000.000