FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: QVL7Y

Calculation Name: 2F4Q-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2F4Q

Chain ID: A

ChEMBL ID:

UniProt ID: Q9RWH8

Base Structure: X-ray

Registration Date: 2023-09-23

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 312
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -4559102.100179
FMO2-HF: Nuclear repulsion 4436928.404332
FMO2-HF: Total energy -122173.695846
FMO2-MP2: Total energy -122535.002211


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:PRO)


Summations of interaction energy for fragment #1(A:2:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-16.946-8.6573.456-4.355-7.395-0.013
Interaction energy analysis for fragmet #1(A:2:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.003 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4ARG10.8480.8932.815-3.323-0.8620.355-1.397-1.419-0.005
4A5THR0-0.022-0.0175.4900.0830.0830.0000.0000.0000.000
5A6GLU-1-0.850-0.8792.391-3.256-1.4051.566-1.454-1.964-0.009
6A7LEU00.0320.0162.656-1.6860.1240.655-0.661-1.805-0.005
7A8LEU00.0150.0063.7870.5440.7380.014-0.040-0.1680.000
8A9ALA0-0.034-0.0136.4190.3250.3250.0000.0000.0000.000
9A10GLU-1-0.958-0.9654.502-2.718-2.551-0.001-0.011-0.1550.000
10A11GLU-1-0.926-0.9598.457-0.615-0.6150.0000.0000.0000.000
11A12TYR0-0.121-0.10510.7370.1500.1500.0000.0000.0000.000
12A13LEU0-0.027-0.00712.7300.0060.0060.0000.0000.0000.000
13A14ARG10.8450.92013.7030.4320.4320.0000.0000.0000.000
14A15ARG10.7730.86215.7970.2890.2890.0000.0000.0000.000
15A16GLU-1-0.845-0.91018.080-0.362-0.3620.0000.0000.0000.000
16A17GLY00.001-0.00421.1680.0160.0160.0000.0000.0000.000
17A18HIS0-0.008-0.01324.364-0.005-0.0050.0000.0000.0000.000
18A19ASP-1-0.827-0.90927.574-0.153-0.1530.0000.0000.0000.000
19A20PRO0-0.0400.00025.474-0.015-0.0150.0000.0000.0000.000
20A21GLN0-0.012-0.00223.738-0.012-0.0120.0000.0000.0000.000
21A22LYS10.8320.88820.1930.2270.2270.0000.0000.0000.000
22A23PHE00.0100.01518.5070.0240.0240.0000.0000.0000.000
23A24ARG11.0261.02215.4830.2690.2690.0000.0000.0000.000
24A39LEU00.0700.02625.103-0.002-0.0020.0000.0000.0000.000
25A40ALA00.0340.00125.761-0.006-0.0060.0000.0000.0000.000
26A41ARG10.8260.91719.7040.2960.2960.0000.0000.0000.000
27A42ILE00.0750.02620.7380.0040.0040.0000.0000.0000.000
28A43ALA0-0.0030.00323.2550.0010.0010.0000.0000.0000.000
29A44ARG10.9230.95426.3360.1440.1440.0000.0000.0000.000
30A45LEU00.0100.02619.6290.0080.0080.0000.0000.0000.000
31A46ALA00.0210.01523.3550.0010.0010.0000.0000.0000.000
32A47VAL00.0180.01018.9550.0110.0110.0000.0000.0000.000
33A48PRO00.0240.02121.8770.0010.0010.0000.0000.0000.000
34A49PRO00.0310.01822.566-0.018-0.0180.0000.0000.0000.000
35A50ALA00.0170.00323.418-0.009-0.0090.0000.0000.0000.000
36A51TYR0-0.045-0.01718.6690.0040.0040.0000.0000.0000.000
37A52GLN00.0800.03317.695-0.023-0.0230.0000.0000.0000.000
38A53ASP-1-0.804-0.88112.281-0.542-0.5420.0000.0000.0000.000
39A54VAL0-0.028-0.01213.664-0.045-0.0450.0000.0000.0000.000
40A55TYR0-0.014-0.01511.414-0.034-0.0340.0000.0000.0000.000
41A56VAL0-0.049-0.04813.9830.0290.0290.0000.0000.0000.000
42A57SER00.0380.02214.786-0.048-0.0480.0000.0000.0000.000
43A58PRO00.0100.00514.8720.0640.0640.0000.0000.0000.000
44A59ASP-1-0.759-0.87117.055-0.263-0.2630.0000.0000.0000.000
45A60ALA0-0.071-0.02718.848-0.009-0.0090.0000.0000.0000.000
46A61GLU-1-0.814-0.90520.113-0.172-0.1720.0000.0000.0000.000
47A62ASN0-0.011-0.00513.7760.0280.0280.0000.0000.0000.000
48A63GLU-1-0.835-0.91416.209-0.252-0.2520.0000.0000.0000.000
49A64LEU0-0.064-0.02011.1150.0480.0480.0000.0000.0000.000
50A65GLN00.0130.01214.651-0.047-0.0470.0000.0000.0000.000
51A66ALA00.0000.00015.286-0.013-0.0130.0000.0000.0000.000
52A67PHE0-0.014-0.0068.8240.0830.0830.0000.0000.0000.000
53A68GLY00.0700.04213.782-0.012-0.0120.0000.0000.0000.000
54A69ARG10.8750.9409.8050.3060.3060.0000.0000.0000.000
55A70ASP-1-0.739-0.86115.854-0.108-0.1080.0000.0000.0000.000
56A71ALA00.0200.00019.5200.0020.0020.0000.0000.0000.000
57A72ALA00.0190.02720.9110.0130.0130.0000.0000.0000.000
58A73GLY00.0200.02817.0960.0200.0200.0000.0000.0000.000
59A74ARG10.7970.88515.2350.0280.0280.0000.0000.0000.000
60A75LEU00.0410.0299.700-0.015-0.0150.0000.0000.0000.000
61A76GLN0-0.044-0.02714.1670.0470.0470.0000.0000.0000.000
62A77TYR00.014-0.00211.115-0.011-0.0110.0000.0000.0000.000
63A78ARG10.8270.90816.6190.2170.2170.0000.0000.0000.000
64A79TYR00.010-0.00215.611-0.015-0.0150.0000.0000.0000.000
65A80HIS00.0320.03219.3020.0180.0180.0000.0000.0000.000
66A81PRO00.016-0.00621.3000.0160.0160.0000.0000.0000.000
67A82ASP-1-0.788-0.89823.711-0.121-0.1210.0000.0000.0000.000
68A83PHE0-0.081-0.05320.7560.0150.0150.0000.0000.0000.000
69A84VAL0-0.063-0.02723.8030.0080.0080.0000.0000.0000.000
70A85GLN0-0.0050.01126.3830.0130.0130.0000.0000.0000.000
71A86ALA00.007-0.00629.4880.0020.0020.0000.0000.0000.000
72A87GLY00.0190.01730.6920.0030.0030.0000.0000.0000.000
73A88ALA0-0.0060.00828.5320.0020.0020.0000.0000.0000.000
74A89LEU0-0.039-0.01023.8110.0040.0040.0000.0000.0000.000
75A90LYS10.9040.95528.3850.0700.0700.0000.0000.0000.000
76A91LYS10.8240.88228.2980.0020.0020.0000.0000.0000.000
77A92TRP00.1460.04626.935-0.001-0.0010.0000.0000.0000.000
78A93GLN00.0670.07325.9130.0030.0030.0000.0000.0000.000
79A94ARG10.8270.89421.8240.0520.0520.0000.0000.0000.000
80A95LEU0-0.024-0.01422.024-0.005-0.0050.0000.0000.0000.000
81A96THR00.010-0.00721.4220.0020.0020.0000.0000.0000.000
82A97ARG10.7610.85219.7460.1750.1750.0000.0000.0000.000
83A98PHE0-0.052-0.02217.377-0.020-0.0200.0000.0000.0000.000
84A99ALA0-0.002-0.01316.6060.0020.0020.0000.0000.0000.000
85A100GLY00.0550.03315.7960.0040.0040.0000.0000.0000.000
86A101ALA0-0.009-0.00313.035-0.058-0.0580.0000.0000.0000.000
87A102LEU0-0.051-0.02311.784-0.002-0.0020.0000.0000.0000.000
88A103PRO00.0450.03010.9780.0970.0970.0000.0000.0000.000
89A104THR00.0570.0227.3910.0660.0660.0000.0000.0000.000
90A105LEU0-0.0040.0067.0140.0400.0400.0000.0000.0000.000
91A106LYS10.8090.9148.4570.1650.1650.0000.0000.0000.000
92A107VAL00.0440.0452.6260.0090.4890.308-0.145-0.6440.000
93A108ALA00.0320.0214.3601.2971.464-0.001-0.041-0.1250.000
94A109THR0-0.015-0.0375.2680.9380.967-0.001-0.007-0.0210.000
95A110THR0-0.050-0.0435.986-0.230-0.2300.0000.0000.0000.000
96A111ALA00.0010.0182.974-1.592-0.5650.562-0.582-1.0080.006
97A112ASP-1-0.734-0.8234.938-0.167-0.064-0.001-0.017-0.0860.000
98A113LEU0-0.058-0.0478.224-0.414-0.4140.0000.0000.0000.000
99A114ARG10.9340.9745.216-3.013-3.0130.0000.0000.0000.000
100A115ALA00.0140.0399.918-0.209-0.2090.0000.0000.0000.000
101A116SER00.0330.01011.401-0.133-0.1330.0000.0000.0000.000
102A117GLY00.0350.02014.9620.0060.0060.0000.0000.0000.000
103A118LEU00.0270.00816.9640.0710.0710.0000.0000.0000.000
104A119PRO00.1100.07613.364-0.067-0.0670.0000.0000.0000.000
105A120PRO00.0440.00115.1440.0630.0630.0000.0000.0000.000
106A121ARG10.7650.8097.874-0.619-0.6190.0000.0000.0000.000
107A122LYS10.8540.95612.213-0.815-0.8150.0000.0000.0000.000
108A123VAL00.0010.00613.110-0.027-0.0270.0000.0000.0000.000
109A124MET0-0.021-0.00714.501-0.061-0.0610.0000.0000.0000.000
110A125ALA00.0310.04111.208-0.075-0.0750.0000.0000.0000.000
111A126LEU00.0070.00613.044-0.054-0.0540.0000.0000.0000.000
112A127MET0-0.051-0.02015.865-0.067-0.0670.0000.0000.0000.000
113A128THR00.011-0.02013.507-0.078-0.0780.0000.0000.0000.000
114A129ARG10.8520.9249.416-1.008-1.0080.0000.0000.0000.000
115A130LEU0-0.0010.00715.773-0.055-0.0550.0000.0000.0000.000
116A131LEU0-0.068-0.03218.212-0.041-0.0410.0000.0000.0000.000
117A132HIS0-0.029-0.01016.412-0.034-0.0340.0000.0000.0000.000
118A133VAL00.0180.00817.690-0.025-0.0250.0000.0000.0000.000
119A134ALA0-0.0020.00820.305-0.021-0.0210.0000.0000.0000.000
120A135ARG10.8250.90222.352-0.139-0.1390.0000.0000.0000.000
121A136PHE00.0520.02423.025-0.020-0.0200.0000.0000.0000.000
122A137ARG10.8190.90124.240-0.074-0.0740.0000.0000.0000.000
123A138VAL00.0400.04622.0540.0140.0140.0000.0000.0000.000
124A149THR0-0.0220.00035.375-0.003-0.0030.0000.0000.0000.000
125A150TYR0-0.051-0.03331.2160.0020.0020.0000.0000.0000.000
126A151GLY00.0240.00128.411-0.009-0.0090.0000.0000.0000.000
127A152LEU00.0340.02120.7450.0000.0000.0000.0000.0000.000
128A153SER0-0.006-0.01923.6680.0100.0100.0000.0000.0000.000
129A154THR0-0.043-0.02825.083-0.001-0.0010.0000.0000.0000.000
130A155LEU00.0240.02826.267-0.009-0.0090.0000.0000.0000.000
131A156ARG10.8650.92228.861-0.109-0.1090.0000.0000.0000.000
132A157GLN00.021-0.00728.363-0.014-0.0140.0000.0000.0000.000
133A158ARG10.9540.97330.694-0.106-0.1060.0000.0000.0000.000
134A159HIS0-0.063-0.01630.417-0.002-0.0020.0000.0000.0000.000
135A160VAL0-0.029-0.01326.4040.0020.0020.0000.0000.0000.000
136A161VAL00.0290.02829.830-0.005-0.0050.0000.0000.0000.000
137A162VAL00.005-0.00326.3690.0090.0090.0000.0000.0000.000
138A163ASP-1-0.879-0.93528.9340.1620.1620.0000.0000.0000.000
139A164GLY00.0320.01328.8430.0000.0000.0000.0000.0000.000
140A165ASN0-0.017-0.02924.2020.0390.0390.0000.0000.0000.000
141A166THR0-0.0020.01324.4900.0220.0220.0000.0000.0000.000
142A167VAL0-0.0030.00423.5420.0050.0050.0000.0000.0000.000
143A168THR00.0070.00426.492-0.009-0.0090.0000.0000.0000.000
144A169PHE00.005-0.01023.263-0.002-0.0020.0000.0000.0000.000
145A170ARG10.9230.93929.110-0.116-0.1160.0000.0000.0000.000
146A171PHE0-0.031-0.01728.312-0.001-0.0010.0000.0000.0000.000
147A172LYS10.8750.94733.507-0.077-0.0770.0000.0000.0000.000
148A173GLY00.0780.03332.5920.0040.0040.0000.0000.0000.000
149A174LYS10.9830.97332.738-0.050-0.0500.0000.0000.0000.000
150A175HIS00.022-0.00734.5650.0030.0030.0000.0000.0000.000
151A176GLY00.0470.04137.360-0.002-0.0020.0000.0000.0000.000
152A177VAL0-0.0470.00834.3280.0010.0010.0000.0000.0000.000
153A178SER00.0400.01135.8340.0080.0080.0000.0000.0000.000
154A179GLN0-0.031-0.03629.4290.0060.0060.0000.0000.0000.000
155A180HIS00.0690.05832.0170.0050.0050.0000.0000.0000.000
156A181LYS10.7880.89026.871-0.121-0.1210.0000.0000.0000.000
157A182ALA00.0130.01427.8030.0050.0050.0000.0000.0000.000
158A183THR0-0.031-0.00921.718-0.003-0.0030.0000.0000.0000.000
159A184SER00.0600.01223.641-0.003-0.0030.0000.0000.0000.000
160A185ASP-1-0.757-0.85017.7880.4870.4870.0000.0000.0000.000
161A186ARG11.0021.01919.924-0.359-0.3590.0000.0000.0000.000
162A187THR0-0.102-0.07415.0260.0390.0390.0000.0000.0000.000
163A188LEU00.018-0.00217.8570.0260.0260.0000.0000.0000.000
164A189ALA00.0350.02719.202-0.005-0.0050.0000.0000.0000.000
165A190ALA00.0290.01420.008-0.014-0.0140.0000.0000.0000.000
166A191ASN0-0.053-0.02216.022-0.005-0.0050.0000.0000.0000.000
167A192MET0-0.008-0.00319.971-0.006-0.0060.0000.0000.0000.000
168A193GLN00.0490.02022.815-0.027-0.0270.0000.0000.0000.000
169A194LYS10.8920.93218.983-0.490-0.4900.0000.0000.0000.000
170A195LEU0-0.059-0.02320.798-0.006-0.0060.0000.0000.0000.000
171A196LEU0-0.048-0.03124.300-0.024-0.0240.0000.0000.0000.000
172A197ASP-1-0.878-0.92726.1530.2450.2450.0000.0000.0000.000
173A198LEU0-0.054-0.00823.686-0.008-0.0080.0000.0000.0000.000
174A199PRO00.0310.01528.270-0.011-0.0110.0000.0000.0000.000
175A200GLY00.0800.07430.3130.0060.0060.0000.0000.0000.000
176A201PRO0-0.047-0.03831.928-0.005-0.0050.0000.0000.0000.000
177A202TRP00.010-0.01328.329-0.002-0.0020.0000.0000.0000.000
178A203LEU00.0210.02525.1630.0040.0040.0000.0000.0000.000
179A204PHE00.0640.01020.7650.0150.0150.0000.0000.0000.000
180A205GLN0-0.045-0.02923.302-0.020-0.0200.0000.0000.0000.000
181A206THR0-0.067-0.05018.5130.0350.0350.0000.0000.0000.000
182A207VAL00.000-0.00720.270-0.038-0.0380.0000.0000.0000.000
183A208ASP-1-0.800-0.88920.3340.2810.2810.0000.0000.0000.000
184A209ALA0-0.029-0.02520.8630.0020.0020.0000.0000.0000.000
185A210GLY00.0050.00622.475-0.006-0.0060.0000.0000.0000.000
186A211GLY0-0.047-0.01925.112-0.014-0.0140.0000.0000.0000.000
187A212GLY0-0.038-0.01426.709-0.013-0.0130.0000.0000.0000.000
188A213GLU-1-0.928-0.95323.8420.1590.1590.0000.0000.0000.000
189A214ARG10.8950.91924.349-0.161-0.1610.0000.0000.0000.000
190A215ARG10.8080.88219.237-0.253-0.2530.0000.0000.0000.000
191A216ARG10.9060.93723.798-0.130-0.1300.0000.0000.0000.000
192A217ILE00.0170.03318.576-0.001-0.0010.0000.0000.0000.000
193A218HIS00.009-0.00821.968-0.022-0.0220.0000.0000.0000.000
194A219SER00.0260.00122.0390.0110.0110.0000.0000.0000.000
195A220THR00.0310.01122.3770.0000.0000.0000.0000.0000.000
196A221GLU-1-0.763-0.84418.0600.2350.2350.0000.0000.0000.000
197A222LEU00.0640.02016.8230.0010.0010.0000.0000.0000.000
198A223ASN0-0.055-0.04517.473-0.010-0.0100.0000.0000.0000.000
199A224ALA0-0.0050.00717.646-0.031-0.0310.0000.0000.0000.000
200A225TYR0-0.021-0.0439.458-0.120-0.1200.0000.0000.0000.000
201A226LEU0-0.016-0.01313.317-0.038-0.0380.0000.0000.0000.000
202A227ARG10.8630.92314.7890.0660.0660.0000.0000.0000.000
203A228GLU-1-0.822-0.8658.380-0.113-0.1130.0000.0000.0000.000
204A229VAL0-0.013-0.0118.945-0.134-0.1340.0000.0000.0000.000
205A230ILE0-0.005-0.00510.901-0.046-0.0460.0000.0000.0000.000
206A231GLY00.0110.03913.804-0.018-0.0180.0000.0000.0000.000
207A232PRO00.0060.02014.841-0.063-0.0630.0000.0000.0000.000
208A233PHE0-0.013-0.01316.3120.0390.0390.0000.0000.0000.000
209A234THR00.001-0.03218.3610.0140.0140.0000.0000.0000.000
210A235ALA00.0730.01620.2110.0090.0090.0000.0000.0000.000
211A236LYS10.8320.92121.2430.0070.0070.0000.0000.0000.000
212A237ASP-1-0.762-0.84220.291-0.028-0.0280.0000.0000.0000.000
213A238PHE00.1010.05815.207-0.006-0.0060.0000.0000.0000.000
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