FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: R9LK8

Calculation Name: 5HUS-A-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 5HUS

Chain ID: A

ChEMBL ID:

UniProt ID: A0A1D8

Base Structure: X-ray

Registration Date: 2023-06-22

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 293
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -4198201.701211
FMO2-HF: Nuclear repulsion 4083701.699146
FMO2-HF: Total energy -114500.002066
FMO2-MP2: Total energy -114835.566958


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:GLY)


Summations of interaction energy for fragment #1(A:1:GLY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-6.416-2.8067.463-5.101-5.97-0.024
Interaction energy analysis for fragmet #1(A:1:GLY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.028 / q_NPA : 0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3LEU00.0150.0283.382-2.0260.4610.030-1.236-1.2820.004
4A4VAL00.0240.0215.418-0.826-0.825-0.001-0.0070.0070.000
5A5PRO00.024-0.0027.5100.3280.3280.0000.0000.0000.000
6A6PHE00.0290.0188.851-0.101-0.1010.0000.0000.0000.000
7A7THR00.007-0.00911.804-0.081-0.0810.0000.0000.0000.000
8A8LYS10.9680.97914.952-0.135-0.1350.0000.0000.0000.000
9A9ASN0-0.020-0.00118.1050.0010.0010.0000.0000.0000.000
10A10ALA00.0900.05515.593-0.003-0.0030.0000.0000.0000.000
11A11PHE00.0110.00917.6190.0100.0100.0000.0000.0000.000
12A12LYS10.9090.94519.175-0.150-0.1500.0000.0000.0000.000
13A13ASP-1-0.893-0.95220.1970.1360.1360.0000.0000.0000.000
14A14TRP0-0.066-0.04819.641-0.008-0.0080.0000.0000.0000.000
15A15CYS0-0.048-0.02421.714-0.011-0.0110.0000.0000.0000.000
16A16SER0-0.0430.00824.792-0.017-0.0170.0000.0000.0000.000
17A17VAL0-0.029-0.02126.461-0.006-0.0060.0000.0000.0000.000
18A18ASN0-0.046-0.02529.112-0.002-0.0020.0000.0000.0000.000
19A19GLY00.0220.00231.874-0.004-0.0040.0000.0000.0000.000
20A20LYS10.7570.86730.941-0.085-0.0850.0000.0000.0000.000
21A21ARG10.7930.88325.562-0.120-0.1200.0000.0000.0000.000
22A22LEU0-0.016-0.00224.760-0.006-0.0060.0000.0000.0000.000
23A23ILE0-0.0020.00020.3580.0210.0210.0000.0000.0000.000
24A24ILE0-0.012-0.00620.703-0.019-0.0190.0000.0000.0000.000
25A25LEU00.009-0.00717.8460.0430.0430.0000.0000.0000.000
26A26ALA00.0240.01716.332-0.038-0.0380.0000.0000.0000.000
27A27LEU0-0.010-0.01416.3860.0350.0350.0000.0000.0000.000
28A28GLU-1-0.828-0.89417.5150.1510.1510.0000.0000.0000.000
29A29ILE0-0.026-0.01219.797-0.005-0.0050.0000.0000.0000.000
30A30SER00.0340.00922.920-0.013-0.0130.0000.0000.0000.000
31A31SER0-0.004-0.03225.0840.0000.0000.0000.0000.0000.000
32A32ALA0-0.0340.00826.226-0.007-0.0070.0000.0000.0000.000
33A33VAL00.0070.00926.2110.0070.0070.0000.0000.0000.000
34A47LYS10.8600.90015.779-0.183-0.1830.0000.0000.0000.000
35A48VAL00.005-0.00814.012-0.016-0.0160.0000.0000.0000.000
36A49ASN00.0110.01311.153-0.038-0.0380.0000.0000.0000.000
37A50VAL0-0.011-0.00115.1330.0110.0110.0000.0000.0000.000
38A51ILE00.0020.00818.774-0.005-0.0050.0000.0000.0000.000
39A52ASP-1-0.733-0.82821.7540.1020.1020.0000.0000.0000.000
40A53PRO00.0370.00225.3170.0080.0080.0000.0000.0000.000
41A54SER0-0.040-0.03927.3620.0010.0010.0000.0000.0000.000
42A55GLY00.002-0.01325.263-0.002-0.0020.0000.0000.0000.000
43A56LEU0-0.011-0.01021.5520.0070.0070.0000.0000.0000.000
44A57VAL00.0060.00224.2660.0040.0040.0000.0000.0000.000
45A58ARG10.8220.91126.566-0.101-0.1010.0000.0000.0000.000
46A59LEU0-0.057-0.02521.164-0.004-0.0040.0000.0000.0000.000
47A60LEU0-0.031-0.01221.3200.0180.0180.0000.0000.0000.000
48A61SER00.0300.01025.185-0.001-0.0010.0000.0000.0000.000
49A62ASP-1-0.837-0.89727.4440.1000.1000.0000.0000.0000.000
50A63LEU0-0.029-0.01123.0790.0000.0000.0000.0000.0000.000
51A64VAL0-0.044-0.02027.093-0.002-0.0020.0000.0000.0000.000
52A65GLU-1-0.963-0.97229.2430.0780.0780.0000.0000.0000.000
53A66SER0-0.080-0.04329.098-0.005-0.0050.0000.0000.0000.000
54A67GLN00.006-0.02231.4470.0030.0030.0000.0000.0000.000
55A68ASP-1-0.841-0.87030.7090.1080.1080.0000.0000.0000.000
56A69THR0-0.019-0.01626.1520.0110.0110.0000.0000.0000.000
57A70PHE00.0050.00527.796-0.006-0.0060.0000.0000.0000.000
58A71VAL00.0340.00723.4700.0150.0150.0000.0000.0000.000
59A72TYR0-0.009-0.03324.218-0.018-0.0180.0000.0000.0000.000
60A73LEU0-0.0210.00821.9330.0210.0210.0000.0000.0000.000
61A74LEU0-0.018-0.00719.617-0.015-0.0150.0000.0000.0000.000
62A75SER00.030-0.00221.1680.0100.0100.0000.0000.0000.000
63A76TYR00.013-0.00117.880-0.019-0.0190.0000.0000.0000.000
64A77LEU00.0060.01623.912-0.011-0.0110.0000.0000.0000.000
65A78GLN00.0570.02126.9370.0010.0010.0000.0000.0000.000
66A79ARG10.8180.88830.547-0.068-0.0680.0000.0000.0000.000
67A80SER00.0290.01932.6660.0030.0030.0000.0000.0000.000
68A81ASP-1-0.810-0.90230.1610.0780.0780.0000.0000.0000.000
69A82LEU00.0090.00726.3140.0020.0020.0000.0000.0000.000
70A83ASP-1-0.747-0.86130.3600.0810.0810.0000.0000.0000.000
71A84ILE0-0.096-0.05333.770-0.003-0.0030.0000.0000.0000.000
72A85MET0-0.060-0.01926.8210.0000.0000.0000.0000.0000.000
73A86PHE00.0500.00925.8610.0010.0010.0000.0000.0000.000
74A87LYS10.9140.97431.938-0.065-0.0650.0000.0000.0000.000
75A88ARG10.8680.93134.632-0.067-0.0670.0000.0000.0000.000
76A89TYR0-0.017-0.00230.962-0.003-0.0030.0000.0000.0000.000
77A90PRO00.0330.01831.8350.0060.0060.0000.0000.0000.000
78A91GLN00.0620.01431.2700.0000.0000.0000.0000.0000.000
79A92ILE0-0.0200.00725.9700.0070.0070.0000.0000.0000.000
80A93GLY00.0110.01428.429-0.008-0.0080.0000.0000.0000.000
81A94LEU0-0.042-0.02827.3650.0110.0110.0000.0000.0000.000
82A95ILE00.0010.00124.493-0.008-0.0080.0000.0000.0000.000
83A96ALA00.0310.01425.6990.0090.0090.0000.0000.0000.000
84A97GLU-1-0.723-0.86126.5390.0850.0850.0000.0000.0000.000
85A98ASN0-0.049-0.05321.1620.0110.0110.0000.0000.0000.000
86A99GLY00.0560.00824.0950.0080.0080.0000.0000.0000.000
87A100ASN0-0.025-0.01526.659-0.011-0.0110.0000.0000.0000.000
88A101PHE00.0260.01129.709-0.009-0.0090.0000.0000.0000.000
89A102VAL00.0210.01628.9880.0090.0090.0000.0000.0000.000
90A103LYS10.7620.88331.007-0.089-0.0890.0000.0000.0000.000
91A104LEU00.0530.02031.4970.0060.0060.0000.0000.0000.000
92A105ILE00.0540.03029.196-0.005-0.0050.0000.0000.0000.000
93A106GLY0-0.0230.00333.193-0.004-0.0040.0000.0000.0000.000
94A107ALA0-0.066-0.02035.960-0.006-0.0060.0000.0000.0000.000
95A108LYS10.9400.96137.082-0.059-0.0590.0000.0000.0000.000
96A109ASN00.003-0.00838.7750.0000.0000.0000.0000.0000.000
97A110TRP00.001-0.01730.2930.0030.0030.0000.0000.0000.000
98A111ILE0-0.0030.00134.220-0.006-0.0060.0000.0000.0000.000
99A112SER0-0.041-0.03734.2560.0050.0050.0000.0000.0000.000
100A113LEU0-0.018-0.00429.522-0.002-0.0020.0000.0000.0000.000
101A114ALA00.0360.01832.733-0.002-0.0020.0000.0000.0000.000
102A115ASP-1-0.784-0.88634.1720.0520.0520.0000.0000.0000.000
103A116LYS10.8580.91937.706-0.047-0.0470.0000.0000.0000.000
104A117ASP-1-0.827-0.91040.0190.0410.0410.0000.0000.0000.000
105A118GLU-1-0.833-0.89635.9750.0610.0610.0000.0000.0000.000
106A119LEU0-0.032-0.00933.995-0.001-0.0010.0000.0000.0000.000
107A120ASN0-0.051-0.04137.862-0.001-0.0010.0000.0000.0000.000
108A121SER0-0.027-0.01640.632-0.003-0.0030.0000.0000.0000.000
109A122TRP0-0.016-0.01035.8140.0000.0000.0000.0000.0000.000
110A123MET0-0.0130.01433.207-0.001-0.0010.0000.0000.0000.000
111A124PRO00.003-0.00337.158-0.001-0.0010.0000.0000.0000.000
112A125GLU-1-0.862-0.90838.9300.0290.0290.0000.0000.0000.000
113A126ILE00.0080.00232.293-0.001-0.0010.0000.0000.0000.000
114A127VAL0-0.011-0.00734.7170.0000.0000.0000.0000.0000.000
115A128LYS10.8840.93135.921-0.032-0.0320.0000.0000.0000.000
116A129LEU0-0.051-0.00633.701-0.002-0.0020.0000.0000.0000.000
117A130VAL00.0430.01231.346-0.002-0.0020.0000.0000.0000.000
118A131GLU-1-0.908-0.96833.9930.0330.0330.0000.0000.0000.000
119A132SER0-0.051-0.03136.768-0.003-0.0030.0000.0000.0000.000
120A133LYS10.7870.86632.758-0.027-0.0270.0000.0000.0000.000
121A134VAL0-0.029-0.00733.112-0.002-0.0020.0000.0000.0000.000
122A135GLU-1-0.944-0.96735.2060.0180.0180.0000.0000.0000.000
123A136ARG10.8940.95436.888-0.015-0.0150.0000.0000.0000.000
124A137LEU0-0.043-0.00629.977-0.003-0.0030.0000.0000.0000.000
125A138PRO00.0460.04033.8380.0020.0020.0000.0000.0000.000
126A139GLY00.010-0.00732.769-0.002-0.0020.0000.0000.0000.000
127A140SER0-0.045-0.02030.3250.0030.0030.0000.0000.0000.000
128A141PHE00.000-0.02127.938-0.001-0.0010.0000.0000.0000.000
129A142CYS0-0.0040.00430.7510.0030.0030.0000.0000.0000.000
130A143GLU-1-0.779-0.83026.9770.0860.0860.0000.0000.0000.000
131A144ALA00.023-0.00530.9180.0010.0010.0000.0000.0000.000
132A145LEU0-0.054-0.00828.440-0.001-0.0010.0000.0000.0000.000
133A146ASP-1-0.847-0.90232.7180.0640.0640.0000.0000.0000.000
134A147ALA0-0.064-0.05331.454-0.003-0.0030.0000.0000.0000.000
135A148THR0-0.075-0.04827.1390.0040.0040.0000.0000.0000.000
136A149VAL00.0260.01029.073-0.004-0.0040.0000.0000.0000.000
137A150ARG10.7910.85722.598-0.096-0.0960.0000.0000.0000.000
138A151PHE00.0270.02627.672-0.004-0.0040.0000.0000.0000.000
139A152HIS0-0.038-0.03824.9730.0010.0010.0000.0000.0000.000
140A153ALA00.0500.00225.070-0.005-0.0050.0000.0000.0000.000
141A154GLY0-0.011-0.00526.683-0.004-0.0040.0000.0000.0000.000
142A155LYS10.8110.88427.240-0.011-0.0110.0000.0000.0000.000
143A156SER00.0380.02129.055-0.003-0.0030.0000.0000.0000.000
144A157PHE0-0.007-0.01920.735-0.004-0.0040.0000.0000.0000.000
145A158SER0-0.051-0.04025.994-0.003-0.0030.0000.0000.0000.000
146A159GLU-1-0.842-0.89228.0820.0020.0020.0000.0000.0000.000
147A160ASP-1-0.867-0.93830.102-0.012-0.0120.0000.0000.0000.000
148A161ARG10.8020.87122.0480.0290.0290.0000.0000.0000.000
149A162GLU-1-0.750-0.83224.968-0.029-0.0290.0000.0000.0000.000
150A163ARG10.9770.99227.450-0.001-0.0010.0000.0000.0000.000
151A164SER0-0.0110.00126.8330.0050.0050.0000.0000.0000.000
152A165LEU0-0.040-0.02221.6550.0060.0060.0000.0000.0000.000
153A166ASP-1-0.863-0.92425.644-0.005-0.0050.0000.0000.0000.000
154A167THR0-0.050-0.04328.5620.0030.0030.0000.0000.0000.000
155A168MET0-0.0590.00423.5100.0070.0070.0000.0000.0000.000
156A169GLY00.0270.01626.3410.0050.0050.0000.0000.0000.000
157A170GLU-1-0.859-0.91827.1390.0220.0220.0000.0000.0000.000
158A171THR00.005-0.01529.2030.0020.0020.0000.0000.0000.000
159A172ILE0-0.021-0.01223.8240.0040.0040.0000.0000.0000.000
160A173GLN0-0.0050.00528.0700.0010.0010.0000.0000.0000.000
161A174HIS00.0010.01930.4390.0020.0020.0000.0000.0000.000
162A175ILE00.0190.00429.9260.0010.0010.0000.0000.0000.000
163A176ASN00.0300.00526.6460.0060.0060.0000.0000.0000.000
164A177THR0-0.046-0.04431.0230.0000.0000.0000.0000.0000.000
165A178LEU0-0.038-0.01534.208-0.002-0.0020.0000.0000.0000.000
166A179PHE0-0.030-0.02432.9680.0000.0000.0000.0000.0000.000
167A180GLU-1-0.827-0.87229.6930.0500.0500.0000.0000.0000.000
168A181HIS0-0.021-0.01432.4250.0040.0040.0000.0000.0000.000
169A182ASN0-0.029-0.00234.864-0.001-0.0010.0000.0000.0000.000
170A183GLY00.0040.01031.6050.0030.0030.0000.0000.0000.000
171A184VAL0-0.051-0.02430.0420.0070.0070.0000.0000.0000.000
172A185HIS10.8100.85926.315-0.072-0.0720.0000.0000.0000.000
173A186ALA0-0.018-0.00226.6230.0050.0050.0000.0000.0000.000
174A187THR00.011-0.00420.199-0.003-0.0030.0000.0000.0000.000
175A188LEU00.0200.01319.5430.0020.0020.0000.0000.0000.000
176A189VAL00.0150.00017.4100.0130.0130.0000.0000.0000.000
177A190ARG10.8790.93814.866-0.085-0.0850.0000.0000.0000.000
178A191ASN0-0.018-0.00417.796-0.006-0.0060.0000.0000.0000.000
179A192SER00.0140.00421.378-0.001-0.0010.0000.0000.0000.000
180A193VAL00.0200.01222.4790.0020.0020.0000.0000.0000.000
181A194ILE0-0.0260.00422.044-0.001-0.0010.0000.0000.0000.000
182A195VAL00.0260.00024.895-0.003-0.0030.0000.0000.0000.000
183A196GLN00.0180.01723.6830.0090.0090.0000.0000.0000.000
184A197LYS10.8410.91127.968-0.071-0.0710.0000.0000.0000.000
185A198ASP-1-0.818-0.88826.4610.0910.0910.0000.0000.0000.000
186A199GLN0-0.019-0.03724.272-0.007-0.0070.0000.0000.0000.000
187A200ILE00.0080.01625.3570.0070.0070.0000.0000.0000.000
188A201SER00.0270.01420.934-0.009-0.0090.0000.0000.0000.000
189A202LEU00.000-0.00220.7900.0010.0010.0000.0000.0000.000
190A203LYS10.8780.94824.006-0.097-0.0970.0000.0000.0000.000
191A204ALA0-0.0180.00225.932-0.006-0.0060.0000.0000.0000.000
192A205ILE0-0.033-0.01520.887-0.002-0.0020.0000.0000.0000.000
193A206ARG10.8150.88125.307-0.107-0.1070.0000.0000.0000.000
194A207LEU0-0.0150.01328.083-0.007-0.0070.0000.0000.0000.000
195A208VAL00.0290.01027.470-0.007-0.0070.0000.0000.0000.000
196A209LEU00.0100.00425.937-0.004-0.0040.0000.0000.0000.000
197A210SER00.010-0.01128.900-0.008-0.0080.0000.0000.0000.000
198A211CYS0-0.097-0.05032.387-0.008-0.0080.0000.0000.0000.000
199A212HIS00.0340.03930.382-0.002-0.0020.0000.0000.0000.000
200A213ASN0-0.030-0.02330.822-0.001-0.0010.0000.0000.0000.000
201A214SER00.001-0.02032.873-0.002-0.0020.0000.0000.0000.000
202A215ASN0-0.056-0.02435.756-0.003-0.0030.0000.0000.0000.000
203A216LEU00.0150.03235.804-0.005-0.0050.0000.0000.0000.000
204A217ASP-1-0.794-0.89437.6130.0630.0630.0000.0000.0000.000
205A218GLN0-0.002-0.02037.9970.0000.0000.0000.0000.0000.000
206A219LYS10.9080.94639.510-0.052-0.0520.0000.0000.0000.000
207A220TYR0-0.014-0.01239.054-0.003-0.0030.0000.0000.0000.000
208A221VAL00.0380.01335.385-0.001-0.0010.0000.0000.0000.000
209A222VAL0-0.025-0.02038.6190.0000.0000.0000.0000.0000.000
210A223THR0-0.086-0.05640.298-0.002-0.0020.0000.0000.0000.000
211A224HIS10.8280.92340.111-0.060-0.0600.0000.0000.0000.000
212A225ILE00.0160.02935.0930.0030.0030.0000.0000.0000.000
213A226ASN00.0530.02036.4210.0030.0030.0000.0000.0000.000
214A227GLU-1-0.846-0.91936.7280.0640.0640.0000.0000.0000.000
215A228PHE0-0.014-0.00532.3940.0040.0040.0000.0000.0000.000
216A229GLN00.004-0.00331.9610.0040.0040.0000.0000.0000.000
217A230GLN00.0110.02933.138-0.003-0.0030.0000.0000.0000.000
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