
FMODB ID: RQJV8
Calculation Name: 2FTB-A-Xray547
Preferred Name:
Target Type:
Ligand Name: oleic acid
Ligand 3-letter code: OLA
Ligand of Interest (LOI):
PDB ID: 2FTB
Chain ID: A
UniProt ID: P81400
Base Structure: X-ray
Registration Date: 2025-10-04
Reference: Sci Data 11, 1164 (2024).
DOI: https://doi.org/10.1038/s41597-024-03999-2
Apendix: None
Modeling method
Optimization | MOE:Amber10:EHT |
---|---|
Restraint | OptAll |
Protonation | MOE:Protonate 3D |
Complement | MOE:Homology Modeling |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 125 |
LigandResidueName | |
LigandFragmentNumber | 0 |
LigandCharge | |
Software | ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922 |
Total energy (hartree)
FMO2-HF: Electronic energy | -1027581.629777 |
---|---|
FMO2-HF: Nuclear repulsion | 979530.492231 |
FMO2-HF: Total energy | -48051.137545 |
FMO2-MP2: Total energy | -48191.840309 |
3D Structure
Ligand structure

Ligand Interaction

Ligand binding energy
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(A:1:PRO)
Summations of interaction energy for
fragment #1(A:1:PRO)
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-42.349 | -37.988 | 9.959 | -7.447 | -6.872 | -0.083 |
Interaction energy analysis for fragmet #1(A:1:PRO)
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | A | 3 | ASN | 0 | -0.007 | 0.021 | 3.461 | 9.832 | 14.072 | -0.019 | -1.932 | -2.288 | -0.008 |
4 | A | 4 | GLY | 0 | 0.042 | 0.031 | 5.372 | -0.608 | -0.525 | -0.001 | -0.009 | -0.072 | 0.000 |
42 | A | 42 | GLN | 0 | 0.042 | 0.021 | 1.803 | -36.640 | -37.131 | 9.974 | -5.352 | -4.131 | -0.075 |
102 | A | 102 | VAL | 0 | -0.015 | -0.001 | 3.537 | 1.357 | 1.663 | 0.006 | -0.067 | -0.246 | 0.000 |
124 | A | 124 | ARG | 1 | 0.795 | 0.887 | 4.119 | 47.329 | 47.552 | -0.001 | -0.087 | -0.135 | 0.000 |
5 | A | 5 | THR | 0 | -0.004 | -0.011 | 8.951 | 0.398 | 0.398 | 0.000 | 0.000 | 0.000 | 0.000 |
6 | A | 6 | TRP | 0 | -0.016 | -0.015 | 5.830 | -0.096 | -0.096 | 0.000 | 0.000 | 0.000 | 0.000 |
7 | A | 7 | GLN | 0 | -0.012 | -0.006 | 12.431 | 1.337 | 1.337 | 0.000 | 0.000 | 0.000 | 0.000 |
8 | A | 8 | VAL | 0 | -0.018 | -0.004 | 15.475 | -0.430 | -0.430 | 0.000 | 0.000 | 0.000 | 0.000 |
9 | A | 9 | TYR | 0 | -0.115 | -0.103 | 14.873 | 1.388 | 1.388 | 0.000 | 0.000 | 0.000 | 0.000 |
10 | A | 10 | SER | 0 | -0.035 | -0.034 | 18.084 | 1.089 | 1.089 | 0.000 | 0.000 | 0.000 | 0.000 |
11 | A | 11 | GLN | 0 | 0.009 | -0.014 | 18.461 | -1.347 | -1.347 | 0.000 | 0.000 | 0.000 | 0.000 |
12 | A | 12 | GLU | -1 | -0.764 | -0.811 | 20.040 | -14.184 | -14.184 | 0.000 | 0.000 | 0.000 | 0.000 |
13 | A | 13 | ASN | 0 | -0.020 | -0.042 | 22.323 | 0.124 | 0.124 | 0.000 | 0.000 | 0.000 | 0.000 |
14 | A | 14 | TYR | 0 | 0.012 | 0.012 | 22.827 | 0.003 | 0.003 | 0.000 | 0.000 | 0.000 | 0.000 |
15 | A | 15 | GLU | -1 | -0.861 | -0.938 | 24.522 | -10.007 | -10.007 | 0.000 | 0.000 | 0.000 | 0.000 |
16 | A | 16 | ALA | 0 | -0.016 | 0.000 | 27.490 | 0.248 | 0.248 | 0.000 | 0.000 | 0.000 | 0.000 |
17 | A | 17 | PHE | 0 | 0.001 | -0.007 | 21.358 | 0.027 | 0.027 | 0.000 | 0.000 | 0.000 | 0.000 |
18 | A | 18 | LEU | 0 | -0.004 | -0.006 | 24.990 | 0.082 | 0.082 | 0.000 | 0.000 | 0.000 | 0.000 |
19 | A | 19 | ARG | 1 | 0.891 | 0.923 | 27.132 | 9.608 | 9.608 | 0.000 | 0.000 | 0.000 | 0.000 |
20 | A | 20 | ALA | 0 | -0.034 | -0.013 | 27.253 | 0.262 | 0.262 | 0.000 | 0.000 | 0.000 | 0.000 |
21 | A | 21 | VAL | 0 | -0.066 | -0.032 | 24.474 | -0.013 | -0.013 | 0.000 | 0.000 | 0.000 | 0.000 |
22 | A | 22 | GLY | 0 | -0.007 | 0.012 | 27.764 | 0.098 | 0.098 | 0.000 | 0.000 | 0.000 | 0.000 |
23 | A | 23 | LEU | 0 | -0.050 | -0.024 | 27.890 | 0.175 | 0.175 | 0.000 | 0.000 | 0.000 | 0.000 |
24 | A | 24 | PRO | 0 | 0.015 | 0.007 | 31.672 | 0.129 | 0.129 | 0.000 | 0.000 | 0.000 | 0.000 |
25 | A | 25 | GLU | -1 | -0.765 | -0.889 | 33.966 | -9.188 | -9.188 | 0.000 | 0.000 | 0.000 | 0.000 |
26 | A | 26 | ASP | -1 | -0.918 | -0.943 | 34.633 | -8.318 | -8.318 | 0.000 | 0.000 | 0.000 | 0.000 |
27 | A | 27 | ILE | 0 | -0.054 | -0.031 | 30.631 | -0.163 | -0.163 | 0.000 | 0.000 | 0.000 | 0.000 |
28 | A | 28 | ILE | 0 | -0.006 | 0.001 | 29.764 | -0.409 | -0.409 | 0.000 | 0.000 | 0.000 | 0.000 |
29 | A | 29 | ASN | 0 | -0.014 | -0.020 | 30.222 | -0.333 | -0.333 | 0.000 | 0.000 | 0.000 | 0.000 |
30 | A | 30 | VAL | 0 | 0.007 | 0.011 | 30.480 | -0.046 | -0.046 | 0.000 | 0.000 | 0.000 | 0.000 |
31 | A | 31 | ALA | 0 | -0.008 | -0.019 | 26.779 | -0.291 | -0.291 | 0.000 | 0.000 | 0.000 | 0.000 |
32 | A | 32 | LYS | 1 | 0.837 | 0.912 | 25.982 | 9.534 | 9.534 | 0.000 | 0.000 | 0.000 | 0.000 |
33 | A | 33 | ASP | -1 | -0.858 | -0.909 | 25.840 | -10.841 | -10.841 | 0.000 | 0.000 | 0.000 | 0.000 |
34 | A | 34 | ILE | 0 | -0.070 | -0.026 | 23.589 | -0.255 | -0.255 | 0.000 | 0.000 | 0.000 | 0.000 |
35 | A | 35 | ASN | 0 | 0.029 | 0.012 | 20.373 | -0.373 | -0.373 | 0.000 | 0.000 | 0.000 | 0.000 |
36 | A | 36 | PRO | 0 | -0.046 | -0.029 | 17.727 | -0.001 | -0.001 | 0.000 | 0.000 | 0.000 | 0.000 |
37 | A | 37 | ILE | 0 | 0.023 | 0.027 | 15.989 | -0.510 | -0.510 | 0.000 | 0.000 | 0.000 | 0.000 |
38 | A | 38 | ILE | 0 | -0.038 | -0.029 | 12.130 | 0.511 | 0.511 | 0.000 | 0.000 | 0.000 | 0.000 |
39 | A | 39 | GLU | -1 | -0.818 | -0.896 | 11.695 | -27.294 | -27.294 | 0.000 | 0.000 | 0.000 | 0.000 |
40 | A | 40 | ILE | 0 | -0.023 | -0.011 | 6.587 | 0.491 | 0.491 | 0.000 | 0.000 | 0.000 | 0.000 |
41 | A | 41 | GLN | 0 | -0.010 | -0.006 | 7.988 | -1.659 | -1.659 | 0.000 | 0.000 | 0.000 | 0.000 |
43 | A | 43 | ASN | 0 | -0.050 | -0.017 | 5.762 | -2.784 | -2.784 | 0.000 | 0.000 | 0.000 | 0.000 |
44 | A | 44 | GLY | 0 | 0.056 | 0.008 | 6.319 | -1.073 | -1.073 | 0.000 | 0.000 | 0.000 | 0.000 |
45 | A | 45 | ASP | -1 | -0.872 | -0.933 | 6.195 | -35.630 | -35.630 | 0.000 | 0.000 | 0.000 | 0.000 |
46 | A | 46 | ASN | 0 | -0.063 | -0.018 | 8.662 | 2.806 | 2.806 | 0.000 | 0.000 | 0.000 | 0.000 |
47 | A | 47 | PHE | 0 | 0.037 | 0.001 | 4.869 | -5.342 | -5.342 | 0.000 | 0.000 | 0.000 | 0.000 |
48 | A | 48 | VAL | 0 | 0.009 | 0.014 | 9.242 | 3.178 | 3.178 | 0.000 | 0.000 | 0.000 | 0.000 |
49 | A | 49 | VAL | 0 | 0.010 | 0.003 | 9.791 | -2.573 | -2.573 | 0.000 | 0.000 | 0.000 | 0.000 |
50 | A | 50 | THR | 0 | -0.010 | 0.001 | 12.131 | 2.495 | 2.495 | 0.000 | 0.000 | 0.000 | 0.000 |
51 | A | 51 | SER | 0 | -0.002 | 0.016 | 15.199 | -0.658 | -0.658 | 0.000 | 0.000 | 0.000 | 0.000 |
52 | A | 52 | LYS | 1 | 0.904 | 0.933 | 17.210 | 17.053 | 17.053 | 0.000 | 0.000 | 0.000 | 0.000 |
53 | A | 53 | THR | 0 | 0.047 | 0.023 | 20.088 | -0.124 | -0.124 | 0.000 | 0.000 | 0.000 | 0.000 |
54 | A | 54 | PRO | 0 | 0.041 | 0.010 | 23.331 | -0.004 | -0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
55 | A | 55 | ASN | 0 | -0.006 | 0.003 | 26.609 | 0.210 | 0.210 | 0.000 | 0.000 | 0.000 | 0.000 |
56 | A | 56 | GLN | 0 | -0.007 | 0.000 | 23.834 | -0.004 | -0.004 | 0.000 | 0.000 | 0.000 | 0.000 |
57 | A | 57 | SER | 0 | 0.036 | 0.020 | 20.563 | -0.705 | -0.705 | 0.000 | 0.000 | 0.000 | 0.000 |
58 | A | 58 | VAL | 0 | -0.028 | -0.002 | 19.526 | 0.520 | 0.520 | 0.000 | 0.000 | 0.000 | 0.000 |
59 | A | 59 | THR | 0 | -0.009 | -0.017 | 15.889 | -0.577 | -0.577 | 0.000 | 0.000 | 0.000 | 0.000 |
60 | A | 60 | ASN | 0 | 0.001 | 0.008 | 15.482 | 1.603 | 1.603 | 0.000 | 0.000 | 0.000 | 0.000 |
61 | A | 61 | SER | 0 | 0.002 | -0.020 | 13.476 | -1.070 | -1.070 | 0.000 | 0.000 | 0.000 | 0.000 |
62 | A | 62 | PHE | 0 | 0.018 | 0.017 | 9.685 | 1.451 | 1.451 | 0.000 | 0.000 | 0.000 | 0.000 |
63 | A | 63 | THR | 0 | -0.023 | -0.025 | 11.918 | -1.138 | -1.138 | 0.000 | 0.000 | 0.000 | 0.000 |
64 | A | 64 | ILE | 0 | -0.009 | 0.000 | 7.165 | 1.180 | 1.180 | 0.000 | 0.000 | 0.000 | 0.000 |
65 | A | 65 | GLY | 0 | -0.014 | -0.010 | 11.697 | 0.724 | 0.724 | 0.000 | 0.000 | 0.000 | 0.000 |
66 | A | 66 | LYS | 1 | 0.909 | 0.958 | 14.915 | 19.721 | 19.721 | 0.000 | 0.000 | 0.000 | 0.000 |
67 | A | 67 | GLU | -1 | -0.935 | -0.964 | 16.743 | -14.037 | -14.037 | 0.000 | 0.000 | 0.000 | 0.000 |
68 | A | 68 | ALA | 0 | -0.008 | -0.004 | 16.976 | -0.031 | -0.031 | 0.000 | 0.000 | 0.000 | 0.000 |
69 | A | 69 | GLU | -1 | -0.905 | -0.952 | 18.992 | -11.911 | -11.911 | 0.000 | 0.000 | 0.000 | 0.000 |
70 | A | 70 | ILE | 0 | -0.013 | -0.004 | 16.473 | -0.489 | -0.489 | 0.000 | 0.000 | 0.000 | 0.000 |
71 | A | 71 | THR | 0 | -0.006 | -0.012 | 20.003 | 1.133 | 1.133 | 0.000 | 0.000 | 0.000 | 0.000 |
72 | A | 72 | SER | 0 | -0.015 | -0.019 | 20.333 | -0.745 | -0.745 | 0.000 | 0.000 | 0.000 | 0.000 |
73 | A | 73 | MET | 0 | 0.020 | -0.001 | 20.514 | 0.063 | 0.063 | 0.000 | 0.000 | 0.000 | 0.000 |
74 | A | 74 | GLY | 0 | 0.068 | 0.035 | 23.091 | 0.272 | 0.272 | 0.000 | 0.000 | 0.000 | 0.000 |
75 | A | 75 | GLY | 0 | -0.048 | -0.016 | 25.229 | 0.418 | 0.418 | 0.000 | 0.000 | 0.000 | 0.000 |
76 | A | 76 | LYS | 1 | 0.938 | 0.979 | 26.446 | 10.959 | 10.959 | 0.000 | 0.000 | 0.000 | 0.000 |
77 | A | 77 | LYS | 1 | 0.942 | 0.985 | 23.928 | 12.015 | 12.015 | 0.000 | 0.000 | 0.000 | 0.000 |
78 | A | 78 | ILE | 0 | 0.001 | -0.004 | 21.273 | 0.571 | 0.571 | 0.000 | 0.000 | 0.000 | 0.000 |
79 | A | 79 | LYS | 1 | 0.905 | 0.958 | 22.367 | 11.642 | 11.642 | 0.000 | 0.000 | 0.000 | 0.000 |
80 | A | 80 | CYS | 0 | -0.018 | -0.006 | 18.475 | -0.108 | -0.108 | 0.000 | 0.000 | 0.000 | 0.000 |
81 | A | 81 | THR | 0 | 0.053 | 0.032 | 16.184 | -0.337 | -0.337 | 0.000 | 0.000 | 0.000 | 0.000 |
82 | A | 82 | VAL | 0 | -0.023 | 0.005 | 10.900 | 0.152 | 0.152 | 0.000 | 0.000 | 0.000 | 0.000 |
83 | A | 83 | VAL | 0 | 0.004 | -0.012 | 12.123 | -0.051 | -0.051 | 0.000 | 0.000 | 0.000 | 0.000 |
84 | A | 84 | LEU | 0 | 0.022 | 0.012 | 5.623 | -1.522 | -1.522 | 0.000 | 0.000 | 0.000 | 0.000 |
85 | A | 85 | GLU | -1 | -0.887 | -0.943 | 9.494 | -16.884 | -16.884 | 0.000 | 0.000 | 0.000 | 0.000 |
86 | A | 86 | GLY | 0 | 0.011 | -0.007 | 10.654 | -0.377 | -0.377 | 0.000 | 0.000 | 0.000 | 0.000 |
87 | A | 87 | GLY | 0 | -0.010 | 0.004 | 6.243 | -0.587 | -0.587 | 0.000 | 0.000 | 0.000 | 0.000 |
88 | A | 88 | LYS | 1 | 0.860 | 0.930 | 5.683 | 16.402 | 16.402 | 0.000 | 0.000 | 0.000 | 0.000 |
89 | A | 89 | LEU | 0 | 0.004 | 0.011 | 6.460 | 0.760 | 0.760 | 0.000 | 0.000 | 0.000 | 0.000 |
90 | A | 90 | VAL | 0 | -0.007 | -0.017 | 8.885 | 1.767 | 1.767 | 0.000 | 0.000 | 0.000 | 0.000 |
91 | A | 91 | SER | 0 | 0.018 | 0.015 | 12.681 | 0.368 | 0.368 | 0.000 | 0.000 | 0.000 | 0.000 |
92 | A | 92 | LYS | 1 | 0.942 | 0.954 | 15.709 | 16.823 | 16.823 | 0.000 | 0.000 | 0.000 | 0.000 |
93 | A | 93 | THR | 0 | -0.029 | 0.000 | 19.325 | 0.206 | 0.206 | 0.000 | 0.000 | 0.000 | 0.000 |
94 | A | 94 | ASP | -1 | -0.843 | -0.932 | 22.821 | -11.330 | -11.330 | 0.000 | 0.000 | 0.000 | 0.000 |
95 | A | 95 | GLN | 0 | -0.044 | -0.006 | 24.691 | 0.247 | 0.247 | 0.000 | 0.000 | 0.000 | 0.000 |
96 | A | 96 | PHE | 0 | 0.002 | -0.003 | 17.696 | 0.146 | 0.146 | 0.000 | 0.000 | 0.000 | 0.000 |
97 | A | 97 | SER | 0 | -0.020 | -0.008 | 18.472 | -0.264 | -0.264 | 0.000 | 0.000 | 0.000 | 0.000 |
98 | A | 98 | HIS | 0 | -0.051 | -0.027 | 13.006 | 0.737 | 0.737 | 0.000 | 0.000 | 0.000 | 0.000 |
99 | A | 99 | ILE | 0 | -0.021 | -0.002 | 11.770 | -0.690 | -0.690 | 0.000 | 0.000 | 0.000 | 0.000 |
100 | A | 100 | GLN | 0 | 0.018 | -0.010 | 7.620 | 1.337 | 1.337 | 0.000 | 0.000 | 0.000 | 0.000 |
101 | A | 101 | GLU | -1 | -0.876 | -0.946 | 6.629 | -28.815 | -28.815 | 0.000 | 0.000 | 0.000 | 0.000 |
103 | A | 103 | LYS | 1 | 0.863 | 0.934 | 5.639 | 24.408 | 24.408 | 0.000 | 0.000 | 0.000 | 0.000 |
104 | A | 104 | GLY | 0 | 0.040 | 0.024 | 6.314 | 2.928 | 2.928 | 0.000 | 0.000 | 0.000 | 0.000 |
105 | A | 105 | ASN | 0 | 0.054 | 0.023 | 6.797 | -6.926 | -6.926 | 0.000 | 0.000 | 0.000 | 0.000 |
106 | A | 106 | GLU | -1 | -0.744 | -0.815 | 9.467 | -18.694 | -18.694 | 0.000 | 0.000 | 0.000 | 0.000 |
107 | A | 107 | MET | 0 | -0.008 | 0.014 | 7.772 | -4.978 | -4.978 | 0.000 | 0.000 | 0.000 | 0.000 |
108 | A | 108 | VAL | 0 | -0.027 | -0.009 | 9.303 | 2.431 | 2.431 | 0.000 | 0.000 | 0.000 | 0.000 |
109 | A | 109 | GLU | -1 | -0.764 | -0.854 | 10.582 | -24.043 | -24.043 | 0.000 | 0.000 | 0.000 | 0.000 |
110 | A | 110 | THR | 0 | -0.053 | -0.033 | 12.853 | 1.411 | 1.411 | 0.000 | 0.000 | 0.000 | 0.000 |
111 | A | 111 | LEU | 0 | 0.012 | 0.016 | 15.663 | -0.622 | -0.622 | 0.000 | 0.000 | 0.000 | 0.000 |
112 | A | 112 | THR | 0 | -0.005 | 0.004 | 18.335 | 0.778 | 0.778 | 0.000 | 0.000 | 0.000 | 0.000 |
113 | A | 113 | VAL | 0 | 0.059 | 0.021 | 21.613 | -0.239 | -0.239 | 0.000 | 0.000 | 0.000 | 0.000 |
114 | A | 114 | GLY | 0 | 0.033 | 0.021 | 24.767 | 0.226 | 0.226 | 0.000 | 0.000 | 0.000 | 0.000 |
115 | A | 115 | GLY | 0 | -0.029 | -0.009 | 26.734 | 0.345 | 0.345 | 0.000 | 0.000 | 0.000 | 0.000 |
116 | A | 116 | ALA | 0 | 0.003 | 0.015 | 26.369 | 0.024 | 0.024 | 0.000 | 0.000 | 0.000 | 0.000 |
117 | A | 117 | THR | 0 | -0.008 | -0.030 | 20.374 | -0.205 | -0.205 | 0.000 | 0.000 | 0.000 | 0.000 |
118 | A | 118 | LEU | 0 | -0.008 | 0.016 | 19.020 | 0.389 | 0.389 | 0.000 | 0.000 | 0.000 | 0.000 |
119 | A | 119 | ILE | 0 | -0.010 | -0.008 | 16.466 | -0.741 | -0.741 | 0.000 | 0.000 | 0.000 | 0.000 |
120 | A | 120 | ARG | 1 | 0.848 | 0.904 | 14.115 | 19.790 | 19.790 | 0.000 | 0.000 | 0.000 | 0.000 |
121 | A | 121 | ARG | 1 | 0.820 | 0.879 | 13.988 | 15.068 | 15.068 | 0.000 | 0.000 | 0.000 | 0.000 |
122 | A | 122 | SER | 0 | 0.060 | 0.015 | 11.717 | 1.531 | 1.531 | 0.000 | 0.000 | 0.000 | 0.000 |
123 | A | 123 | LYS | 1 | 0.836 | 0.916 | 12.166 | 17.767 | 17.767 | 0.000 | 0.000 | 0.000 | 0.000 |
125 | A | 125 | VAL | -1 | -0.945 | -0.961 | 10.925 | -21.112 | -21.112 | 0.000 | 0.000 | 0.000 | 0.000 |