FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-14

All entries: 75777

Number of unique PDB entries: 32023

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FMODB ID: RQJV8

Calculation Name: 2FTB-A-Xray547

Preferred Name:

Target Type:

Ligand Name: oleic acid

Ligand 3-letter code: OLA

Ligand of Interest (LOI):

PDB ID: 2FTB

Chain ID: A

ChEMBL ID:

UniProt ID: P81400

Base Structure: X-ray

Registration Date: 2025-10-04

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 125
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1027581.629777
FMO2-HF: Nuclear repulsion 979530.492231
FMO2-HF: Total energy -48051.137545
FMO2-MP2: Total energy -48191.840309


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:PRO)


Summations of interaction energy for fragment #1(A:1:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-42.349-37.9889.959-7.447-6.872-0.083
Interaction energy analysis for fragmet #1(A:1:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.807 / q_NPA : 0.877
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ASN0-0.0070.0213.4619.83214.072-0.019-1.932-2.288-0.008
4A4GLY00.0420.0315.372-0.608-0.525-0.001-0.009-0.0720.000
42A42GLN00.0420.0211.803-36.640-37.1319.974-5.352-4.131-0.075
102A102VAL0-0.015-0.0013.5371.3571.6630.006-0.067-0.2460.000
124A124ARG10.7950.8874.11947.32947.552-0.001-0.087-0.1350.000
5A5THR0-0.004-0.0118.9510.3980.3980.0000.0000.0000.000
6A6TRP0-0.016-0.0155.830-0.096-0.0960.0000.0000.0000.000
7A7GLN0-0.012-0.00612.4311.3371.3370.0000.0000.0000.000
8A8VAL0-0.018-0.00415.475-0.430-0.4300.0000.0000.0000.000
9A9TYR0-0.115-0.10314.8731.3881.3880.0000.0000.0000.000
10A10SER0-0.035-0.03418.0841.0891.0890.0000.0000.0000.000
11A11GLN00.009-0.01418.461-1.347-1.3470.0000.0000.0000.000
12A12GLU-1-0.764-0.81120.040-14.184-14.1840.0000.0000.0000.000
13A13ASN0-0.020-0.04222.3230.1240.1240.0000.0000.0000.000
14A14TYR00.0120.01222.8270.0030.0030.0000.0000.0000.000
15A15GLU-1-0.861-0.93824.522-10.007-10.0070.0000.0000.0000.000
16A16ALA0-0.0160.00027.4900.2480.2480.0000.0000.0000.000
17A17PHE00.001-0.00721.3580.0270.0270.0000.0000.0000.000
18A18LEU0-0.004-0.00624.9900.0820.0820.0000.0000.0000.000
19A19ARG10.8910.92327.1329.6089.6080.0000.0000.0000.000
20A20ALA0-0.034-0.01327.2530.2620.2620.0000.0000.0000.000
21A21VAL0-0.066-0.03224.474-0.013-0.0130.0000.0000.0000.000
22A22GLY0-0.0070.01227.7640.0980.0980.0000.0000.0000.000
23A23LEU0-0.050-0.02427.8900.1750.1750.0000.0000.0000.000
24A24PRO00.0150.00731.6720.1290.1290.0000.0000.0000.000
25A25GLU-1-0.765-0.88933.966-9.188-9.1880.0000.0000.0000.000
26A26ASP-1-0.918-0.94334.633-8.318-8.3180.0000.0000.0000.000
27A27ILE0-0.054-0.03130.631-0.163-0.1630.0000.0000.0000.000
28A28ILE0-0.0060.00129.764-0.409-0.4090.0000.0000.0000.000
29A29ASN0-0.014-0.02030.222-0.333-0.3330.0000.0000.0000.000
30A30VAL00.0070.01130.480-0.046-0.0460.0000.0000.0000.000
31A31ALA0-0.008-0.01926.779-0.291-0.2910.0000.0000.0000.000
32A32LYS10.8370.91225.9829.5349.5340.0000.0000.0000.000
33A33ASP-1-0.858-0.90925.840-10.841-10.8410.0000.0000.0000.000
34A34ILE0-0.070-0.02623.589-0.255-0.2550.0000.0000.0000.000
35A35ASN00.0290.01220.373-0.373-0.3730.0000.0000.0000.000
36A36PRO0-0.046-0.02917.727-0.001-0.0010.0000.0000.0000.000
37A37ILE00.0230.02715.989-0.510-0.5100.0000.0000.0000.000
38A38ILE0-0.038-0.02912.1300.5110.5110.0000.0000.0000.000
39A39GLU-1-0.818-0.89611.695-27.294-27.2940.0000.0000.0000.000
40A40ILE0-0.023-0.0116.5870.4910.4910.0000.0000.0000.000
41A41GLN0-0.010-0.0067.988-1.659-1.6590.0000.0000.0000.000
43A43ASN0-0.050-0.0175.762-2.784-2.7840.0000.0000.0000.000
44A44GLY00.0560.0086.319-1.073-1.0730.0000.0000.0000.000
45A45ASP-1-0.872-0.9336.195-35.630-35.6300.0000.0000.0000.000
46A46ASN0-0.063-0.0188.6622.8062.8060.0000.0000.0000.000
47A47PHE00.0370.0014.869-5.342-5.3420.0000.0000.0000.000
48A48VAL00.0090.0149.2423.1783.1780.0000.0000.0000.000
49A49VAL00.0100.0039.791-2.573-2.5730.0000.0000.0000.000
50A50THR0-0.0100.00112.1312.4952.4950.0000.0000.0000.000
51A51SER0-0.0020.01615.199-0.658-0.6580.0000.0000.0000.000
52A52LYS10.9040.93317.21017.05317.0530.0000.0000.0000.000
53A53THR00.0470.02320.088-0.124-0.1240.0000.0000.0000.000
54A54PRO00.0410.01023.331-0.004-0.0040.0000.0000.0000.000
55A55ASN0-0.0060.00326.6090.2100.2100.0000.0000.0000.000
56A56GLN0-0.0070.00023.834-0.004-0.0040.0000.0000.0000.000
57A57SER00.0360.02020.563-0.705-0.7050.0000.0000.0000.000
58A58VAL0-0.028-0.00219.5260.5200.5200.0000.0000.0000.000
59A59THR0-0.009-0.01715.889-0.577-0.5770.0000.0000.0000.000
60A60ASN00.0010.00815.4821.6031.6030.0000.0000.0000.000
61A61SER00.002-0.02013.476-1.070-1.0700.0000.0000.0000.000
62A62PHE00.0180.0179.6851.4511.4510.0000.0000.0000.000
63A63THR0-0.023-0.02511.918-1.138-1.1380.0000.0000.0000.000
64A64ILE0-0.0090.0007.1651.1801.1800.0000.0000.0000.000
65A65GLY0-0.014-0.01011.6970.7240.7240.0000.0000.0000.000
66A66LYS10.9090.95814.91519.72119.7210.0000.0000.0000.000
67A67GLU-1-0.935-0.96416.743-14.037-14.0370.0000.0000.0000.000
68A68ALA0-0.008-0.00416.976-0.031-0.0310.0000.0000.0000.000
69A69GLU-1-0.905-0.95218.992-11.911-11.9110.0000.0000.0000.000
70A70ILE0-0.013-0.00416.473-0.489-0.4890.0000.0000.0000.000
71A71THR0-0.006-0.01220.0031.1331.1330.0000.0000.0000.000
72A72SER0-0.015-0.01920.333-0.745-0.7450.0000.0000.0000.000
73A73MET00.020-0.00120.5140.0630.0630.0000.0000.0000.000
74A74GLY00.0680.03523.0910.2720.2720.0000.0000.0000.000
75A75GLY0-0.048-0.01625.2290.4180.4180.0000.0000.0000.000
76A76LYS10.9380.97926.44610.95910.9590.0000.0000.0000.000
77A77LYS10.9420.98523.92812.01512.0150.0000.0000.0000.000
78A78ILE00.001-0.00421.2730.5710.5710.0000.0000.0000.000
79A79LYS10.9050.95822.36711.64211.6420.0000.0000.0000.000
80A80CYS0-0.018-0.00618.475-0.108-0.1080.0000.0000.0000.000
81A81THR00.0530.03216.184-0.337-0.3370.0000.0000.0000.000
82A82VAL0-0.0230.00510.9000.1520.1520.0000.0000.0000.000
83A83VAL00.004-0.01212.123-0.051-0.0510.0000.0000.0000.000
84A84LEU00.0220.0125.623-1.522-1.5220.0000.0000.0000.000
85A85GLU-1-0.887-0.9439.494-16.884-16.8840.0000.0000.0000.000
86A86GLY00.011-0.00710.654-0.377-0.3770.0000.0000.0000.000
87A87GLY0-0.0100.0046.243-0.587-0.5870.0000.0000.0000.000
88A88LYS10.8600.9305.68316.40216.4020.0000.0000.0000.000
89A89LEU00.0040.0116.4600.7600.7600.0000.0000.0000.000
90A90VAL0-0.007-0.0178.8851.7671.7670.0000.0000.0000.000
91A91SER00.0180.01512.6810.3680.3680.0000.0000.0000.000
92A92LYS10.9420.95415.70916.82316.8230.0000.0000.0000.000
93A93THR0-0.0290.00019.3250.2060.2060.0000.0000.0000.000
94A94ASP-1-0.843-0.93222.821-11.330-11.3300.0000.0000.0000.000
95A95GLN0-0.044-0.00624.6910.2470.2470.0000.0000.0000.000
96A96PHE00.002-0.00317.6960.1460.1460.0000.0000.0000.000
97A97SER0-0.020-0.00818.472-0.264-0.2640.0000.0000.0000.000
98A98HIS0-0.051-0.02713.0060.7370.7370.0000.0000.0000.000
99A99ILE0-0.021-0.00211.770-0.690-0.6900.0000.0000.0000.000
100A100GLN00.018-0.0107.6201.3371.3370.0000.0000.0000.000
101A101GLU-1-0.876-0.9466.629-28.815-28.8150.0000.0000.0000.000
103A103LYS10.8630.9345.63924.40824.4080.0000.0000.0000.000
104A104GLY00.0400.0246.3142.9282.9280.0000.0000.0000.000
105A105ASN00.0540.0236.797-6.926-6.9260.0000.0000.0000.000
106A106GLU-1-0.744-0.8159.467-18.694-18.6940.0000.0000.0000.000
107A107MET0-0.0080.0147.772-4.978-4.9780.0000.0000.0000.000
108A108VAL0-0.027-0.0099.3032.4312.4310.0000.0000.0000.000
109A109GLU-1-0.764-0.85410.582-24.043-24.0430.0000.0000.0000.000
110A110THR0-0.053-0.03312.8531.4111.4110.0000.0000.0000.000
111A111LEU00.0120.01615.663-0.622-0.6220.0000.0000.0000.000
112A112THR0-0.0050.00418.3350.7780.7780.0000.0000.0000.000
113A113VAL00.0590.02121.613-0.239-0.2390.0000.0000.0000.000
114A114GLY00.0330.02124.7670.2260.2260.0000.0000.0000.000
115A115GLY0-0.029-0.00926.7340.3450.3450.0000.0000.0000.000
116A116ALA00.0030.01526.3690.0240.0240.0000.0000.0000.000
117A117THR0-0.008-0.03020.374-0.205-0.2050.0000.0000.0000.000
118A118LEU0-0.0080.01619.0200.3890.3890.0000.0000.0000.000
119A119ILE0-0.010-0.00816.466-0.741-0.7410.0000.0000.0000.000
120A120ARG10.8480.90414.11519.79019.7900.0000.0000.0000.000
121A121ARG10.8200.87913.98815.06815.0680.0000.0000.0000.000
122A122SER00.0600.01511.7171.5311.5310.0000.0000.0000.000
123A123LYS10.8360.91612.16617.76717.7670.0000.0000.0000.000
125A125VAL-1-0.945-0.96110.925-21.112-21.1120.0000.0000.0000.000