FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-07-23

All entries: 44592

Number of unique PDB entries: 7794

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FMODB ID: RYJ18

Calculation Name: 4HW0-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4HW0

Chain ID: A

ChEMBL ID:

UniProt ID: Q97V10

Base Structure: X-ray

Registration Date: 2025-07-10

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -694160.725948
FMO2-HF: Nuclear repulsion 654146.130366
FMO2-HF: Total energy -40014.595582
FMO2-MP2: Total energy -40130.248463


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:LYS)


Summations of interaction energy for fragment #1(A:7:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-2.147-0.466-0.009-0.928-0.7440.004
Interaction energy analysis for fragmet #1(A:7:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.178 / q_NPA : 0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A8ARG10.7651.0474.103-3.575-3.1220.004-0.206-0.2510.000
5A9GLY00.043-0.0803.813-1.1530.075-0.013-0.722-0.4930.004
6A10THR00.071-0.0076.7720.6260.6260.0000.0000.0000.000
7A10THR0-0.0340.08410.717-0.082-0.0820.0000.0000.0000.000
8A11MET00.077-0.0909.9150.2250.2250.0000.0000.0000.000
9A11MET0-0.0470.11111.406-0.034-0.0340.0000.0000.0000.000
10A12GLU00.204-0.1368.3900.1150.1150.0000.0000.0000.000
11A12GLU-1-0.957-0.7596.6580.2450.2450.0000.0000.0000.000
12A13ILE00.093-0.0678.8050.2920.2920.0000.0000.0000.000
13A13ILE0-0.1030.0726.1940.0400.0400.0000.0000.0000.000
14A14MET00.090-0.1059.4730.1020.1020.0000.0000.0000.000
15A14MET0-0.1210.08413.007-0.036-0.0360.0000.0000.0000.000
16A15PHE00.086-0.08412.4660.0070.0070.0000.0000.0000.000
17A15PHE0-0.0560.10112.167-0.029-0.0290.0000.0000.0000.000
18A16ASP00.081-0.11411.229-0.097-0.0970.0000.0000.0000.000
19A16ASP-1-0.898-0.7719.3601.5451.5450.0000.0000.0000.000
20A17ILE00.107-0.06812.5920.0360.0360.0000.0000.0000.000
21A17ILE0-0.0790.07712.917-0.011-0.0110.0000.0000.0000.000
22A18LEU00.041-0.15514.887-0.003-0.0030.0000.0000.0000.000
23A18LEU0-0.0500.13916.848-0.011-0.0110.0000.0000.0000.000
24A19ARG00.011-0.08416.416-0.056-0.0560.0000.0000.0000.000
25A19ARG10.7931.04412.569-0.895-0.8950.0000.0000.0000.000
26A20ASN00.059-0.11317.444-0.019-0.0190.0000.0000.0000.000
27A20ASN0-0.1640.06215.155-0.034-0.0340.0000.0000.0000.000
28A21CYS0-0.004-0.16918.6750.0000.0000.0000.0000.0000.000
29A21CYS0-0.1540.19819.7380.0080.0080.0000.0000.0000.000
30A22GLU00.140-0.09421.239-0.033-0.0330.0000.0000.0000.000
31A22GLU-1-1.007-0.77622.9440.1930.1930.0000.0000.0000.000
32A23PRO0-0.002-0.11223.9390.0120.0120.0000.0000.0000.000
33A24LYS00.120-0.01725.346-0.013-0.0130.0000.0000.0000.000
34A24LYS10.9141.07826.606-0.170-0.1700.0000.0000.0000.000
35A25CYS00.004-0.09221.4540.0150.0150.0000.0000.0000.000
36A26GLY00.087-0.07322.922-0.028-0.0280.0000.0000.0000.000
37A27ILE00.131-0.01319.9270.0390.0390.0000.0000.0000.000
38A27ILE0-0.0580.13918.359-0.006-0.0060.0000.0000.0000.000
39A28THR00.013-0.08018.8030.0660.0660.0000.0000.0000.000
40A28THR0-0.0040.06821.123-0.009-0.0090.0000.0000.0000.000
41A29ARG00.146-0.09218.7330.0740.0740.0000.0000.0000.000
42A29ARG10.7751.06820.483-0.368-0.3680.0000.0000.0000.000
43A30VAL00.110-0.08216.7570.0680.0680.0000.0000.0000.000
44A30VAL0-0.0570.10815.491-0.007-0.0070.0000.0000.0000.000
45A31ILE00.066-0.08414.5040.1070.1070.0000.0000.0000.000
46A31ILE0-0.1080.06914.834-0.022-0.0220.0000.0000.0000.000
47A32TYR00.058-0.10213.7320.1920.1920.0000.0000.0000.000
48A32TYR0-0.0990.09716.533-0.011-0.0110.0000.0000.0000.000
49A33GLY00.004-0.10314.6450.0980.0980.0000.0000.0000.000
50A34ALA00.082-0.02812.1710.1040.1040.0000.0000.0000.000
51A34ALA0-0.0830.12811.526-0.027-0.0270.0000.0000.0000.000
52A35GLY00.035-0.08110.0020.3750.3750.0000.0000.0000.000
53A36ILE0-0.005-0.0338.9560.5560.5560.0000.0000.0000.000
54A36ILE0-0.0700.1008.480-0.028-0.0280.0000.0000.0000.000
55A37ASN00.151-0.01810.605-0.163-0.1630.0000.0000.0000.000
56A37ASN0-0.0490.08111.455-0.098-0.0980.0000.0000.0000.000
57A38TYR00.190-0.09013.038-0.003-0.0030.0000.0000.0000.000
58A38TYR0-0.0470.11717.559-0.007-0.0070.0000.0000.0000.000
59A39VAL00.055-0.10315.252-0.046-0.0460.0000.0000.0000.000
60A39VAL0-0.0500.11714.4940.0010.0010.0000.0000.0000.000
61A40VAL00.065-0.11811.210-0.138-0.1380.0000.0000.0000.000
62A40VAL0-0.0910.0999.4350.0020.0020.0000.0000.0000.000
63A41ALA00.163-0.10512.647-0.058-0.0580.0000.0000.0000.000
64A41ALA0-0.0630.12314.6550.0000.0000.0000.0000.0000.000
65A42GLN00.078-0.10514.722-0.045-0.0450.0000.0000.0000.000
66A42GLN0-0.1370.08818.062-0.028-0.0280.0000.0000.0000.000
67A43LYS00.165-0.07015.403-0.042-0.0420.0000.0000.0000.000
68A43LYS10.8481.06912.9100.0840.0840.0000.0000.0000.000
69A44TYR0-0.006-0.14314.008-0.081-0.0810.0000.0000.0000.000
70A44TYR0-0.0530.0999.387-0.027-0.0270.0000.0000.0000.000
71A45LEU00.153-0.10915.228-0.037-0.0370.0000.0000.0000.000
72A45LEU0-0.1040.13017.0820.0030.0030.0000.0000.0000.000
73A46ASP00.061-0.13018.261-0.015-0.0150.0000.0000.0000.000
74A46ASP-1-0.962-0.80019.8340.0710.0710.0000.0000.0000.000
75A47GLN00.127-0.10417.853-0.020-0.0200.0000.0000.0000.000
76A47GLN0-0.1260.10615.668-0.001-0.0010.0000.0000.0000.000
77A48LEU00.066-0.09218.545-0.045-0.0450.0000.0000.0000.000
78A48LEU0-0.0680.08415.9210.0060.0060.0000.0000.0000.000
79A49VAL00.080-0.07719.725-0.011-0.0110.0000.0000.0000.000
80A49VAL0-0.0700.08722.2270.0020.0020.0000.0000.0000.000
81A50LYS00.055-0.15022.452-0.007-0.0070.0000.0000.0000.000
82A50LYS10.8161.07322.210-0.044-0.0440.0000.0000.0000.000
83A51VAL00.022-0.10522.088-0.011-0.0110.0000.0000.0000.000
84A51VAL0-0.1240.10220.141-0.004-0.0040.0000.0000.0000.000
85A52GLY00.052-0.07223.307-0.010-0.0100.0000.0000.0000.000
86A53ALA00.0760.00321.341-0.004-0.0040.0000.0000.0000.000
87A53ALA0-0.0720.11020.8130.0010.0010.0000.0000.0000.000
88A54LEU00.019-0.13722.5250.0150.0150.0000.0000.0000.000
89A54LEU0-0.0510.09419.3830.0080.0080.0000.0000.0000.000
90A55ASN00.171-0.06323.613-0.016-0.0160.0000.0000.0000.000
91A55ASN0-0.0860.09828.129-0.009-0.0090.0000.0000.0000.000
92A56ILE00.056-0.08125.9970.0210.0210.0000.0000.0000.000
93A56ILE0-0.0940.09224.8090.0010.0010.0000.0000.0000.000
94A57LYS00.055-0.14127.043-0.018-0.0180.0000.0000.0000.000
95A57LYS10.8791.07829.755-0.123-0.1230.0000.0000.0000.000
96A58THR0-0.005-0.08128.6180.0170.0170.0000.0000.0000.000
97A58THR0-0.0150.09030.3890.0010.0010.0000.0000.0000.000
98A59GLU00.074-0.11230.799-0.014-0.0140.0000.0000.0000.000
99A59GLU-1-1.018-0.84431.2790.1530.1530.0000.0000.0000.000
100A60ASN00.032-0.10431.4980.0120.0120.0000.0000.0000.000
101A60ASN0-0.1340.04332.471-0.006-0.0060.0000.0000.0000.000
102A61ASP00.115-0.10332.3370.0090.0090.0000.0000.0000.000
103A61ASP-1-0.963-0.81432.4250.1450.1450.0000.0000.0000.000
104A62ARG00.069-0.08828.2790.0050.0050.0000.0000.0000.000
105A62ARG10.8711.05327.523-0.201-0.2010.0000.0000.0000.000
106A63LYS00.171-0.08125.613-0.014-0.0140.0000.0000.0000.000
107A63LYS10.8541.09824.151-0.181-0.1810.0000.0000.0000.000
108A64ILE00.003-0.19525.5160.0310.0310.0000.0000.0000.000
109A64ILE0-0.0800.14326.2280.0020.0020.0000.0000.0000.000
110A65TYR00.067-0.08923.046-0.027-0.0270.0000.0000.0000.000
111A65TYR0-0.0690.08622.2000.0090.0090.0000.0000.0000.000
112A66GLU00.072-0.21224.5070.0260.0260.0000.0000.0000.000
113A66GLU-1-0.898-0.76527.3330.1380.1380.0000.0000.0000.000
114A67ILE00.084-0.05823.697-0.017-0.0170.0000.0000.0000.000
115A67ILE0-0.1290.11321.3370.0010.0010.0000.0000.0000.000
116A68THR00.032-0.10924.433-0.002-0.0020.0000.0000.0000.000
117A68THR0-0.0750.04625.866-0.002-0.0020.0000.0000.0000.000
118A69GLU00.150-0.08525.7360.0120.0120.0000.0000.0000.000
119A69GLU-1-1.000-0.81929.0590.0640.0640.0000.0000.0000.000
120A70LYS00.063-0.12625.9930.0000.0000.0000.0000.0000.000
121A70LYS10.8061.04024.2980.0080.0080.0000.0000.0000.000
122A71GLY00.033-0.09622.056-0.012-0.0120.0000.0000.0000.000
123A72LYS00.093-0.00821.4670.0190.0190.0000.0000.0000.000
124A72LYS10.8971.08824.738-0.131-0.1310.0000.0000.0000.000
125A73LEU00.126-0.14922.6800.0140.0140.0000.0000.0000.000
126A73LEU0-0.0940.15124.576-0.004-0.0040.0000.0000.0000.000
127A74LEU00.053-0.07820.309-0.019-0.0190.0000.0000.0000.000
128A74LEU0-0.1200.09717.985-0.001-0.0010.0000.0000.0000.000
129A75ARG00.093-0.07417.844-0.024-0.0240.0000.0000.0000.000
130A75ARG10.8291.01818.222-0.254-0.2540.0000.0000.0000.000
131A76THR00.062-0.08618.0290.0170.0170.0000.0000.0000.000
132A76THR0-0.0700.08522.0930.0050.0050.0000.0000.0000.000
133A77HIS00.125-0.10119.441-0.001-0.0010.0000.0000.0000.000
134A77HIS0-0.1260.10320.042-0.002-0.0020.0000.0000.0000.000
135A78ILE00.113-0.08115.275-0.062-0.0620.0000.0000.0000.000
136A78ILE0-0.1330.07813.268-0.005-0.0050.0000.0000.0000.000
137A79GLU00.084-0.12114.743-0.045-0.0450.0000.0000.0000.000
138A79GLU-1-0.976-0.83616.0850.2330.2330.0000.0000.0000.000
139A80GLU00.146-0.09715.741-0.002-0.0020.0000.0000.0000.000
140A80GLU-1-0.944-0.78619.412-0.040-0.0400.0000.0000.0000.000
141A81PHE00.056-0.08915.357-0.014-0.0140.0000.0000.0000.000
142A81PHE0-0.1370.03511.177-0.043-0.0430.0000.0000.0000.000
143A82ILE00.062-0.10511.940-0.134-0.1340.0000.0000.0000.000
144A82ILE0-0.0820.09810.5150.0030.0030.0000.0000.0000.000
145A83LYS00.179-0.08512.666-0.049-0.0490.0000.0000.0000.000
146A83LYS10.7631.04516.1870.0190.0190.0000.0000.0000.000
147A84ILE00.053-0.11115.104-0.004-0.0040.0000.0000.0000.000
148A84ILE0-0.0800.09216.840-0.004-0.0040.0000.0000.0000.000
149A85ARG00.112-0.08412.204-0.005-0.0050.0000.0000.0000.000
150A85ARG10.7791.0417.4140.8500.8500.0000.0000.0000.000
151A86GLU00.011-0.10612.097-0.142-0.1420.0000.0000.0000.000
152A86GLU-1-0.937-0.8669.525-0.243-0.2430.0000.0000.0000.000
153A87ASN00.124-0.09512.934-0.012-0.0120.0000.0000.0000.000
154A87ASN0-0.1330.07217.5930.0240.0240.0000.0000.0000.000
155A88LEU00.088-0.09615.7060.0370.0370.0000.0000.0000.000
156A88LEU0-0.1240.10414.610-0.009-0.0090.0000.0000.0000.000
157A89TYR00.016-0.14412.549-0.012-0.0120.0000.0000.0000.000
158A89TYR0-0.0160.1137.429-0.204-0.2040.0000.0000.0000.000
159A90SER00.104-0.05613.897-0.015-0.0150.0000.0000.0000.000
160A90SER0-0.0230.09415.3030.0320.0320.0000.0000.0000.000
161A91ALA00.078-0.08616.5510.0240.0240.0000.0000.0000.000
162A91ALA0-0.1020.10919.0010.0020.0020.0000.0000.0000.000
163A92LYS00.085-0.10316.9450.0340.0340.0000.0000.0000.000
164A92LYS10.8311.06315.1630.6160.6160.0000.0000.0000.000
165A93GLU0-0.007-0.16317.045-0.009-0.0090.0000.0000.0000.000
166A93GLU-1-0.948-0.83013.966-0.313-0.3130.0000.0000.0000.000
167A94LYS00.136-0.07318.0700.0160.0160.0000.0000.0000.000
168A94LYS10.8601.05520.7680.1370.1370.0000.0000.0000.000
169A95VAL00.075-0.07021.2160.0280.0280.0000.0000.0000.000
170A95VAL0-0.1090.07721.378-0.003-0.0030.0000.0000.0000.000
171A96SER00.104-0.01120.0640.0210.0210.0000.0000.0000.000
172A96SER0-0.0780.01819.2740.0020.0020.0000.0000.0000.000
173A97GLU0-0.049-0.18621.533-0.003-0.0030.0000.0000.0000.000
174A97GLU-1-0.974-0.83721.397-0.155-0.1550.0000.0000.0000.000
175A98LEU00.048-0.09623.4130.0170.0170.0000.0000.0000.000
176A98LEU0-0.0770.09526.2230.0020.0020.0000.0000.0000.000
177A99LEU0-0.020-0.10224.9040.0190.0190.0000.0000.0000.000
178A99LEU0-0.1520.07623.266-0.008-0.0080.0000.0000.0000.000
179A100ARG00.143-0.09325.946-0.019-0.0190.0000.0000.0000.000
180A100ARG10.8411.04720.2190.2550.2550.0000.0000.0000.000
181A101THR00.079-0.13227.3580.0050.0050.0000.0000.0000.000
182A101THR0-0.0190.10730.0860.0040.0040.0000.0000.0000.000
183A102ASP0-0.073-0.07430.433-0.013-0.0130.0000.0000.0000.000
184A102ASP-1-0.962-0.87831.830-0.106-0.1060.0000.0000.0000.000
185A103SER00.016-0.07632.7650.0080.0080.0000.0000.0000.000
186A103SER00.0000.06335.9270.0000.0000.0000.0000.0000.000
187A104GLU0-0.140-0.13734.2390.0100.0100.0000.0000.0000.000
188A104GLU-1-0.892-0.94133.334-0.135-0.1350.0000.0000.0000.000