FMODB ID: V28M1
Calculation Name: 1L2Y-A-MD54-74400ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-13
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -24596.371079 |
---|---|
FMO2-HF: Nuclear repulsion | 19994.223502 |
FMO2-HF: Total energy | -4602.147578 |
FMO2-MP2: Total energy | -4615.611801 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-9.237 | -7.654 | 11.077 | -4.737 | -7.924 | 0.023 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.046 | 0.011 | 2.851 | 2.677 | 5.968 | 0.882 | -1.627 | -2.546 | 0.003 | |
4 | 4 | GLN | 0 | 0.049 | 0.033 | 1.885 | -0.122 | -3.182 | 10.122 | -2.806 | -4.257 | 0.020 | |
5 | 5 | GLN | 0 | -0.011 | -0.018 | 3.036 | -4.435 | -3.319 | 0.074 | -0.285 | -0.905 | 0.000 | |
6 | 6 | GLN | 0 | -0.042 | -0.018 | 4.798 | 5.657 | 5.893 | -0.001 | -0.019 | -0.216 | 0.000 | |
7 | 7 | GLN | 0 | -0.022 | 0.005 | 6.655 | 3.874 | 3.874 | 0.000 | 0.000 | 0.000 | 0.000 | |
8 | 8 | GLN | 0 | -0.055 | -0.028 | 7.055 | 3.582 | 3.582 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.025 | -0.005 | 8.519 | -1.045 | -1.045 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.960 | -0.973 | 10.320 | -19.425 | -19.425 | 0.000 | 0.000 | 0.000 | 0.000 |