FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: V5581

Calculation Name: 4AEZ-C-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4AEZ

Chain ID: C

ChEMBL ID:

UniProt ID: O14417

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 215
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2506588.759565
FMO2-HF: Nuclear repulsion 2417679.504758
FMO2-HF: Total energy -88909.254808
FMO2-MP2: Total energy -89171.348227


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:9:ASN)


Summations of interaction energy for fragment #1(C:9:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.3110.416-0.025-0.772-0.930
Interaction energy analysis for fragmet #1(C:9:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.009 / q_NPA : -0.022
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C11VAL0-0.032-0.0103.808-0.2401.487-0.025-0.772-0.9300.000
4C12HIS00.0070.0035.879-0.037-0.0370.0000.0000.0000.000
5C13MET00.0490.0168.8090.0360.0360.0000.0000.0000.000
6C14ASP-1-0.835-0.91212.2230.0820.0820.0000.0000.0000.000
7C15VAL00.0100.0009.2460.0190.0190.0000.0000.0000.000
8C16ILE0-0.0170.01210.3220.0280.0280.0000.0000.0000.000
9C17GLU-1-0.840-0.91313.2110.0550.0550.0000.0000.0000.000
10C18GLN0-0.052-0.02614.1310.0190.0190.0000.0000.0000.000
11C19SER00.012-0.00915.2400.0040.0040.0000.0000.0000.000
12C20LYS10.8240.89617.491-0.051-0.0510.0000.0000.0000.000
13C21GLU-1-0.901-0.95119.1180.0880.0880.0000.0000.0000.000
14C22ASN0-0.094-0.04419.658-0.004-0.0040.0000.0000.0000.000
15C23ILE0-0.057-0.02116.3690.0240.0240.0000.0000.0000.000
16C24GLU-1-0.774-0.86820.0630.1630.1630.0000.0000.0000.000
17C25PRO00.0110.01021.3990.0090.0090.0000.0000.0000.000
18C26ARG10.7880.87718.383-0.263-0.2630.0000.0000.0000.000
19C27LYS10.9000.93021.696-0.074-0.0740.0000.0000.0000.000
20C28ALA0-0.047-0.02219.439-0.017-0.0170.0000.0000.0000.000
21C29GLY00.0000.01817.5860.0080.0080.0000.0000.0000.000
22C30HIS0-0.040-0.03814.5810.0740.0740.0000.0000.0000.000
23C31SER0-0.0120.00110.2060.0100.0100.0000.0000.0000.000
24C32ALA00.0840.0317.603-0.011-0.0110.0000.0000.0000.000
25C33SER00.0210.0025.815-0.313-0.3130.0000.0000.0000.000
26C34ALA0-0.0070.0077.474-0.111-0.1110.0000.0000.0000.000
27C35LEU00.0440.02711.058-0.091-0.0910.0000.0000.0000.000
28C36ALA0-0.0090.0007.634-0.061-0.0610.0000.0000.0000.000
29C37LYS10.9140.9629.522-0.783-0.7830.0000.0000.0000.000
30C38SER0-0.028-0.02511.510-0.065-0.0650.0000.0000.0000.000
31C39SER0-0.018-0.02612.420-0.028-0.0280.0000.0000.0000.000
32C40SER0-0.080-0.03211.460-0.007-0.0070.0000.0000.0000.000
33C41ARG10.7530.89013.982-0.441-0.4410.0000.0000.0000.000
34C42ASN00.0170.00716.922-0.044-0.0440.0000.0000.0000.000
35C43HIS0-0.0020.00019.495-0.018-0.0180.0000.0000.0000.000
36C44THR00.001-0.01021.369-0.018-0.0180.0000.0000.0000.000
37C45GLU-1-0.878-0.95323.4910.1900.1900.0000.0000.0000.000
38C46LYS10.9540.97519.918-0.304-0.3040.0000.0000.0000.000
39C47GLU-1-0.815-0.89117.2480.4090.4090.0000.0000.0000.000
40C48VAL00.0430.01620.6920.0270.0270.0000.0000.0000.000
41C49ALA0-0.010-0.00423.3240.0040.0040.0000.0000.0000.000
42C50GLY0-0.016-0.01020.1770.0020.0020.0000.0000.0000.000
43C51LEU00.0030.00717.8260.0220.0220.0000.0000.0000.000
44C52GLN00.0220.01120.8900.0030.0030.0000.0000.0000.000
45C53LYS10.9300.95322.473-0.272-0.2720.0000.0000.0000.000
46C54GLU-1-0.889-0.92616.5120.6190.6190.0000.0000.0000.000
47C55ARG10.8530.92520.904-0.275-0.2750.0000.0000.0000.000
48C56MET0-0.030-0.02123.420-0.017-0.0170.0000.0000.0000.000
49C57GLY0-0.020-0.00222.604-0.017-0.0170.0000.0000.0000.000
50C58HIS00.005-0.00918.146-0.039-0.0390.0000.0000.0000.000
51C59GLU-1-0.746-0.81623.2400.2000.2000.0000.0000.0000.000
52C60ARG10.9750.99625.037-0.271-0.2710.0000.0000.0000.000
53C61LYS10.8630.94019.587-0.423-0.4230.0000.0000.0000.000
54C62ILE00.0280.00425.755-0.012-0.0120.0000.0000.0000.000
55C63GLU-1-0.949-0.95727.9900.1700.1700.0000.0000.0000.000
56C64THR0-0.026-0.01528.277-0.008-0.0080.0000.0000.0000.000
57C65SER0-0.047-0.03427.795-0.009-0.0090.0000.0000.0000.000
58C66GLU-1-0.940-0.96529.0030.1110.1110.0000.0000.0000.000
59C67SER0-0.056-0.03530.523-0.010-0.0100.0000.0000.0000.000
60C68LEU0-0.072-0.03125.135-0.002-0.0020.0000.0000.0000.000
61C69ASP-1-0.868-0.92527.8990.0930.0930.0000.0000.0000.000
62C70ASP-1-0.811-0.86824.7300.1380.1380.0000.0000.0000.000
63C71PRO00.0320.02225.6060.0230.0230.0000.0000.0000.000
64C72LEU0-0.032-0.01725.1810.0190.0190.0000.0000.0000.000
65C73GLN0-0.038-0.03018.882-0.019-0.0190.0000.0000.0000.000
66C74VAL00.0350.01821.5080.0380.0380.0000.0000.0000.000
67C75TRP00.0400.00222.4650.0340.0340.0000.0000.0000.000
68C76ILE0-0.0320.00019.0170.0180.0180.0000.0000.0000.000
69C77ASP-1-0.863-0.92017.8520.4530.4530.0000.0000.0000.000
70C78TYR0-0.079-0.04418.3530.0610.0610.0000.0000.0000.000
71C79ILE00.020-0.01420.7400.0140.0140.0000.0000.0000.000
72C80LYS10.8550.90312.125-0.806-0.8060.0000.0000.0000.000
73C81TRP0-0.019-0.02716.5220.0130.0130.0000.0000.0000.000
74C82THR00.0130.00117.5780.0070.0070.0000.0000.0000.000
75C83LEU0-0.037-0.02518.432-0.007-0.0070.0000.0000.0000.000
76C84ASP-1-0.849-0.90513.5950.8000.8000.0000.0000.0000.000
77C85ASN0-0.021-0.01915.1770.0360.0360.0000.0000.0000.000
78C86PHE00.0130.01117.025-0.025-0.0250.0000.0000.0000.000
79C87PRO00.0330.04116.820-0.023-0.0230.0000.0000.0000.000
80C88GLN00.0980.03418.798-0.006-0.0060.0000.0000.0000.000
81C89GLY0-0.0020.00421.904-0.020-0.0200.0000.0000.0000.000
82C90GLU-1-0.853-0.90623.7150.1840.1840.0000.0000.0000.000
83C91THR00.012-0.00125.561-0.006-0.0060.0000.0000.0000.000
84C92LYS10.9700.97828.003-0.131-0.1310.0000.0000.0000.000
85C93THR0-0.016-0.01625.9440.0000.0000.0000.0000.0000.000
86C94SER00.002-0.00223.6590.0110.0110.0000.0000.0000.000
87C95GLY00.0330.02325.2060.0150.0150.0000.0000.0000.000
88C96LEU00.0270.01723.3360.0010.0010.0000.0000.0000.000
89C97VAL00.0270.00526.390-0.002-0.0020.0000.0000.0000.000
90C98THR00.0090.00829.734-0.009-0.0090.0000.0000.0000.000
91C99LEU0-0.033-0.00523.930-0.007-0.0070.0000.0000.0000.000
92C100LEU00.001-0.00625.311-0.004-0.0040.0000.0000.0000.000
93C101GLU-1-0.763-0.83428.6240.1020.1020.0000.0000.0000.000
94C102ARG10.7680.85529.201-0.193-0.1930.0000.0000.0000.000
95C103CYS00.0030.02127.767-0.005-0.0050.0000.0000.0000.000
96C104THR0-0.009-0.01929.886-0.011-0.0110.0000.0000.0000.000
97C105ARG10.8310.89332.166-0.120-0.1200.0000.0000.0000.000
98C106GLU-1-0.920-0.94531.2330.1290.1290.0000.0000.0000.000
99C107PHE0-0.005-0.02028.526-0.008-0.0080.0000.0000.0000.000
100C108VAL00.0200.03933.830-0.008-0.0080.0000.0000.0000.000
101C109ARG10.9280.94236.812-0.079-0.0790.0000.0000.0000.000
102C110ASN00.0210.01533.643-0.011-0.0110.0000.0000.0000.000
103C111PRO00.023-0.00735.7690.0000.0000.0000.0000.0000.000
104C112LEU00.0030.01630.490-0.005-0.0050.0000.0000.0000.000
105C113TYR0-0.023-0.05027.9010.0000.0000.0000.0000.0000.000
106C114LYS10.8140.92832.301-0.058-0.0580.0000.0000.0000.000
107C115ASP-1-0.858-0.94733.3460.0360.0360.0000.0000.0000.000
108C116ASP-1-0.821-0.87626.9640.0980.0980.0000.0000.0000.000
109C117VAL0-0.012-0.03025.3900.0060.0060.0000.0000.0000.000
110C118ARG10.7310.82522.639-0.138-0.1380.0000.0000.0000.000
111C119TYR00.0310.01325.4280.0090.0090.0000.0000.0000.000
112C120LEU00.0110.01028.2670.0020.0020.0000.0000.0000.000
113C121ARG10.9240.95821.933-0.096-0.0960.0000.0000.0000.000
114C122ILE00.0440.02824.2040.0040.0040.0000.0000.0000.000
115C123TRP00.0440.00727.0110.0010.0010.0000.0000.0000.000
116C124MET0-0.109-0.04628.545-0.006-0.0060.0000.0000.0000.000
117C125GLN0-0.037-0.02322.692-0.005-0.0050.0000.0000.0000.000
118C126TYR0-0.002-0.02127.718-0.001-0.0010.0000.0000.0000.000
119C127VAL00.0130.00130.584-0.003-0.0030.0000.0000.0000.000
120C128ASN0-0.086-0.03328.624-0.014-0.0140.0000.0000.0000.000
121C129TYR0-0.041-0.01926.7500.0020.0020.0000.0000.0000.000
122C130ILE0-0.045-0.01133.192-0.002-0.0020.0000.0000.0000.000
123C131ASP-1-0.875-0.92736.6310.0680.0680.0000.0000.0000.000
124C132GLU-1-0.971-0.98739.8070.0460.0460.0000.0000.0000.000
125C133PRO0-0.010-0.01337.319-0.001-0.0010.0000.0000.0000.000
126C134VAL0-0.031-0.01239.0250.0000.0000.0000.0000.0000.000
127C135GLU-1-0.830-0.91341.8960.0440.0440.0000.0000.0000.000
128C136LEU0-0.0220.00634.7880.0010.0010.0000.0000.0000.000
129C137PHE00.004-0.02035.0280.0000.0000.0000.0000.0000.000
130C138SER0-0.002-0.01439.258-0.004-0.0040.0000.0000.0000.000
131C139PHE00.0120.01838.384-0.002-0.0020.0000.0000.0000.000
132C140LEU00.014-0.00334.873-0.001-0.0010.0000.0000.0000.000
133C141ALA0-0.023-0.01638.899-0.002-0.0020.0000.0000.0000.000
134C142HIS0-0.0200.00641.525-0.004-0.0040.0000.0000.0000.000
135C143HIS0-0.084-0.04239.951-0.001-0.0010.0000.0000.0000.000
136C144HIS0-0.019-0.00840.3210.0010.0010.0000.0000.0000.000
137C145ILE00.0110.01534.4630.0000.0000.0000.0000.0000.000
138C146GLY00.0270.01434.006-0.001-0.0010.0000.0000.0000.000
139C147GLN00.0010.00034.840-0.009-0.0090.0000.0000.0000.000
140C148GLU-1-0.745-0.83935.5430.0060.0060.0000.0000.0000.000
141C149SER0-0.010-0.00230.903-0.005-0.0050.0000.0000.0000.000
142C150SER0-0.043-0.05731.820-0.001-0.0010.0000.0000.0000.000
143C151ILE00.007-0.00727.1980.0000.0000.0000.0000.0000.000
144C152PHE00.0470.04731.6110.0030.0030.0000.0000.0000.000
145C153TYR0-0.018-0.04134.4820.0010.0010.0000.0000.0000.000
146C154GLU-1-0.771-0.83531.2730.0070.0070.0000.0000.0000.000
147C155GLU-1-0.808-0.90230.0800.0520.0520.0000.0000.0000.000
148C156TYR00.0040.01134.4500.0000.0000.0000.0000.0000.000
149C157ALA0-0.011-0.01638.062-0.001-0.0010.0000.0000.0000.000
150C158ASN0-0.016-0.00533.194-0.007-0.0070.0000.0000.0000.000
151C159TYR00.0430.04137.3130.0000.0000.0000.0000.0000.000
152C160PHE00.002-0.01138.742-0.001-0.0010.0000.0000.0000.000
153C161GLU-1-0.761-0.84839.4140.0050.0050.0000.0000.0000.000
154C162SER0-0.079-0.03538.0630.0000.0000.0000.0000.0000.000
155C163ARG10.9000.94040.116-0.041-0.0410.0000.0000.0000.000
156C164GLY00.0320.02743.267-0.001-0.0010.0000.0000.0000.000
157C165LEU0-0.065-0.03244.907-0.002-0.0020.0000.0000.0000.000
158C166PHE00.0920.02543.1300.0010.0010.0000.0000.0000.000
159C167GLN00.0520.04745.989-0.002-0.0020.0000.0000.0000.000
160C168LYS10.8500.91645.824-0.020-0.0200.0000.0000.0000.000
161C169ALA00.0280.01141.8900.0010.0010.0000.0000.0000.000
162C170ASP-1-0.782-0.88642.9070.0010.0010.0000.0000.0000.000
163C171GLU-1-0.853-0.90545.0580.0150.0150.0000.0000.0000.000
164C172VAL0-0.053-0.01740.0840.0000.0000.0000.0000.0000.000
165C173TYR00.0510.01837.274-0.001-0.0010.0000.0000.0000.000
166C174GLN00.0670.03541.839-0.003-0.0030.0000.0000.0000.000
167C175LYS10.8340.92041.798-0.026-0.0260.0000.0000.0000.000
168C176GLY00.0880.04139.9270.0000.0000.0000.0000.0000.000
169C177LYS10.8800.92940.4750.0040.0040.0000.0000.0000.000
170C178ARG10.8440.92542.192-0.010-0.0100.0000.0000.0000.000
171C179MET0-0.051-0.01740.1330.0000.0000.0000.0000.0000.000
172C180LYS10.8860.96439.0190.0150.0150.0000.0000.0000.000
173C181ALA00.0120.01535.805-0.001-0.0010.0000.0000.0000.000
174C182LYS10.8150.90932.550-0.008-0.0080.0000.0000.0000.000
175C183PRO00.039-0.02228.4290.0070.0070.0000.0000.0000.000
176C184PHE00.0580.01331.667-0.001-0.0010.0000.0000.0000.000
177C185LEU00.0420.04029.7060.0020.0020.0000.0000.0000.000
178C186ARG10.8310.87926.367-0.008-0.0080.0000.0000.0000.000
179C187PHE00.0070.00731.8210.0010.0010.0000.0000.0000.000
180C188GLN0-0.0060.00234.9050.0000.0000.0000.0000.0000.000
181C189GLN00.002-0.00132.7150.0030.0030.0000.0000.0000.000
182C190LYS10.8900.95130.7930.0170.0170.0000.0000.0000.000
183C191TYR0-0.026-0.02335.3580.0010.0010.0000.0000.0000.000
184C192GLN0-0.012-0.00438.377-0.001-0.0010.0000.0000.0000.000
185C193GLN00.0130.00032.9040.0060.0060.0000.0000.0000.000
186C194PHE0-0.025-0.00138.3830.0010.0010.0000.0000.0000.000
187C195THR00.009-0.01240.0400.0020.0020.0000.0000.0000.000
188C196HIS0-0.093-0.04240.7840.0000.0000.0000.0000.0000.000
189C197ARG10.8840.89636.5510.0020.0020.0000.0000.0000.000
190C198TRP0-0.068-0.02742.2890.0020.0020.0000.0000.0000.000
191C199LEU0-0.042-0.02745.3640.0010.0010.0000.0000.0000.000
192C200GLU-1-0.903-0.94342.143-0.017-0.0170.0000.0000.0000.000
193C201PHE0-0.042-0.03140.7490.0010.0010.0000.0000.0000.000
194C202ALA0-0.059-0.01346.5400.0020.0020.0000.0000.0000.000
195C203PRO00.0810.04949.3470.0010.0010.0000.0000.0000.000
196C204GLN00.0010.00151.410-0.001-0.0010.0000.0000.0000.000
197C205SER0-0.071-0.04250.6980.0010.0010.0000.0000.0000.000
198C206PHE0-0.014-0.00847.1950.0010.0010.0000.0000.0000.000
199C207SER0-0.010-0.02651.541-0.001-0.0010.0000.0000.0000.000
200C208SER0-0.036-0.00150.6500.0000.0000.0000.0000.0000.000
201C209ASN0-0.019-0.03152.7050.0000.0000.0000.0000.0000.000
202C210THR00.0590.02052.007-0.001-0.0010.0000.0000.0000.000
203C211ASN0-0.067-0.02453.8930.0000.0000.0000.0000.0000.000
204C212SER00.0200.02556.522-0.001-0.0010.0000.0000.0000.000
205C213VAL00.009-0.00457.6160.0000.0000.0000.0000.0000.000
206C214ASN0-0.001-0.00260.3550.0020.0020.0000.0000.0000.000
207C215PRO0-0.015-0.01462.9650.0000.0000.0000.0000.0000.000
208C216LEU0-0.016-0.01165.6250.0010.0010.0000.0000.0000.000
209C217GLN00.0280.03964.7240.0010.0010.0000.0000.0000.000
210C218THR00.002-0.01169.396-0.001-0.0010.0000.0000.0000.000
211C219THR0-0.038-0.02267.5690.0000.0000.0000.0000.0000.000
212C220PHE0-0.018-0.01970.8200.0000.0000.0000.0000.0000.000
213C221GLU-1-0.901-0.93874.176-0.009-0.0090.0000.0000.0000.000
214C222SER0-0.019-0.00777.8760.0000.0000.0000.0000.0000.000
215C223THR0-0.035-0.00980.6860.0000.0000.0000.0000.0000.000