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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: VP2RP

Calculation Name: 2QZO-B-Xray7

Preferred Name: Estrogen receptor alpha

Target Type: SINGLE PROTEIN

Ligand Name: 4-[1-allyl-7-(trifluoromethyl)-1h-indazol-3-yl]benzene-1,3-diol

ligand 3-letter code: KN1

PDB ID: 2QZO

Chain ID: B

ChEMBL ID: CHEMBL206

UniProt ID: P03372

Base Structure: X-ray

Registration Date: 2017-02-24

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement BioStationViewer:StructureComplemation (agonist templeate: 1A52)
Water A bridging water among Glu353, Arg394 and ligand.
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 238
LigandCharge KN1=0
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3139758.206253
FMO2-HF: Nuclear repulsion 3041409.707577
FMO2-HF: Total energy -98348.498676
FMO2-MP2: Total energy -98625.382744


3D Structure
Snapshot
 
Ligand structure

KN1

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-118.428-91.08876.869-42.228-61.9800.041


Interactive mode: IFIE and PIEDA for fragment #237(B:1:KN1)


Summations of interaction energy for fragment #237(B:1:KN1)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-118.428-91.08876.869-42.228-61.98-0.041
Interaction energy analysis for fragmet #237(B:1:KN1)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.041 / q_NPA : ******
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1B309SER10.84930.3170.0840.0840.0000.0000.0000.000
2B310LEU00.10225.1040.0040.0040.0000.0000.0000.000
3B311THR00.01629.1220.0130.0130.0000.0000.0000.000
4B312ALA00.09326.389-0.011-0.0110.0000.0000.0000.000
5B313ASP-1-0.85425.359-0.048-0.0480.0000.0000.0000.000
6B314GLN0-0.01125.544-0.011-0.0110.0000.0000.0000.000
7B315MET00.01021.813-0.036-0.0360.0000.0000.0000.000
8B316VAL00.02220.826-0.022-0.0220.0000.0000.0000.000
9B317SER0-0.02320.533-0.024-0.0240.0000.0000.0000.000
10B318ALA0-0.03221.052-0.032-0.0320.0000.0000.0000.000
11B319LEU0-0.01416.869-0.050-0.0500.0000.0000.0000.000
12B320LEU00.00116.220-0.045-0.0450.0000.0000.0000.000
13B321ASP-1-0.88616.434-0.461-0.4610.0000.0000.0000.000
14B322ALA0-0.07515.714-0.067-0.0670.0000.0000.0000.000
15B323GLU-1-0.80111.239-0.551-0.5510.0000.0000.0000.000
16B324PRO0-0.0448.242-0.045-0.0450.0000.0000.0000.000
17B325PRO00.0009.7810.1440.1440.0000.0000.0000.000
18B326ILE0-0.0026.959-0.427-0.4270.0000.0000.0000.000
19B327LEU0-0.0315.8230.4450.4450.0000.0000.0000.000
20B328TYR00.0096.8900.0900.0900.0000.0000.0000.000
21B329SER00.0017.095-0.505-0.5050.0000.0000.0000.000
22B330GLU-1-0.8648.200-1.391-1.3910.0000.0000.0000.000
23B331TYR0-0.06410.6810.2610.2610.0000.0000.0000.000
24B332ASP-1-0.76912.237-0.370-0.3700.0000.0000.0000.000
25B333PRO0-0.05115.9130.0880.0880.0000.0000.0000.000
26B334THR0-0.09817.9620.0700.0700.0000.0000.0000.000
27B335ARG10.86216.3110.1790.1790.0000.0000.0000.000
28B336PRO00.01517.0500.0150.0150.0000.0000.0000.000
29B337PHE00.01411.394-0.031-0.0310.0000.0000.0000.000
30B338SER00.00813.3990.0110.0110.0000.0000.0000.000
31B339GLU-1-0.7989.0060.8200.8200.0000.0000.0000.000
32B340ALA00.0539.3550.0620.0620.0000.0000.0000.000
33B341SER00.01010.170-0.145-0.1450.0000.0000.0000.000
34B342MET0-0.0216.561-0.184-0.1840.0000.0000.0000.000
35B343MET00.0492.710-1.3750.5940.509-0.716-1.7620.007
36B344GLY00.0085.630-0.769-0.7690.0000.0000.0000.000
37B345LEU0-0.0287.363-0.645-0.6450.0000.0000.0000.000
38B346LEU0-0.0143.001-5.723-1.4601.179-1.112-4.3300.010
39B347THR00.0122.662-9.567-5.7420.827-1.753-2.899-0.015
40B348ASN00.0433.699-0.541-0.4360.0070.028-0.1400.000
41B349LEU0-0.0412.497-0.7441.0140.765-0.605-1.9190.003
42B350ALA00.0092.171-2.658-1.1681.194-0.815-1.869-0.003
43B351ASP-1-0.8523.927-1.514-1.2760.009-0.088-0.1590.000
44B352ARG10.8706.8974.0864.0860.0000.0000.0000.000
45B353GLU-1-0.7641.424-51.914-66.39641.473-21.721-5.270-0.143
46B354LEU00.0225.8241.2941.2940.0000.0000.0000.000
47B355VAL00.0068.4380.6460.6460.0000.0000.0000.000
48B356HIS0-0.0208.3200.5890.5890.0000.0000.0000.000
49B357MET0-0.0226.8700.4970.4970.0000.0000.0000.000
50B358ILE00.0649.6970.3950.3950.0000.0000.0000.000
51B359ASN0-0.08212.9480.2800.2800.0000.0000.0000.000
52B360TRP00.01911.4210.1360.1360.0000.0000.0000.000
53B361ALA00.04413.3510.1480.1480.0000.0000.0000.000
54B362LYS10.91014.9970.8300.8300.0000.0000.0000.000
55B363ARG10.82316.8010.5990.5990.0000.0000.0000.000
56B364VAL0-0.01315.6230.0540.0540.0000.0000.0000.000
57B365PRO0-0.03618.5360.0120.0120.0000.0000.0000.000
58B366GLY00.03122.0360.0250.0250.0000.0000.0000.000
59B367PHE00.02517.3930.0060.0060.0000.0000.0000.000
60B368VAL0-0.03221.149-0.010-0.0100.0000.0000.0000.000
61B369ASP-1-0.93123.098-0.185-0.1850.0000.0000.0000.000
62B370LEU0-0.04221.4680.0170.0170.0000.0000.0000.000
63B371THR0-0.04224.941-0.038-0.0380.0000.0000.0000.000
64B372LEU00.03521.978-0.007-0.0070.0000.0000.0000.000
65B373HIS0-0.01221.653-0.038-0.0380.0000.0000.0000.000
66B374ASP-1-0.82121.317-0.124-0.1240.0000.0000.0000.000
67B375GLN0-0.06719.245-0.044-0.0440.0000.0000.0000.000
68B376VAL00.00716.808-0.037-0.0370.0000.0000.0000.000
69B377HIS00.03216.443-0.034-0.0340.0000.0000.0000.000
70B378LEU0-0.05016.8010.0650.0650.0000.0000.0000.000
71B379LEU0-0.01812.3760.0540.0540.0000.0000.0000.000
72B380GLU-1-0.88912.329-0.320-0.3200.0000.0000.0000.000
73B381CYS0-0.13512.0360.1630.1630.0000.0000.0000.000
74B382ALA00.01411.8240.2230.2230.0000.0000.0000.000
75B383TRP00.0413.811-0.3500.2650.010-0.114-0.5100.001
76B384LEU00.0263.139-2.6860.1290.463-0.660-2.6180.003
77B385GLU-1-0.8255.2512.0342.141-0.001-0.006-0.0990.000
78B386ILE0-0.0196.802-0.072-0.0720.0000.0000.0000.000
79B387LEU0-0.0222.643-3.663-0.7633.414-1.441-4.8720.011
80B388MET0-0.0472.280-7.699-3.2673.267-2.345-5.354-0.013
81B389ILE0-0.0043.278-0.641-0.4990.0140.145-0.3000.001
82B390GLY00.0245.165-0.152-0.1520.0000.0000.0000.000
83B391LEU0-0.0182.109-2.848-0.7123.358-1.636-3.8590.008
84B392VAL0-0.0134.0000.2500.5010.003-0.060-0.1950.000
85B393TRP00.0266.9050.0710.0710.0000.0000.0000.000
86B394ARG10.7851.977-10.148-10.4375.090-2.003-2.7970.026
87B395SER0-0.0497.0290.0580.0580.0000.0000.0000.000
88B396MET0-0.0119.669-0.004-0.0040.0000.0000.0000.000
89B397GLU-1-0.91712.6680.3300.3300.0000.0000.0000.000
90B398HIS0-0.04712.209-0.019-0.0190.0000.0000.0000.000
91B399PRO00.01413.0060.1310.1310.0000.0000.0000.000
92B400GLY0-0.04512.291-0.037-0.0370.0000.0000.0000.000
93B401LYS10.8949.987-0.629-0.6290.0000.0000.0000.000
94B402LEU00.0093.895-0.293-0.0550.001-0.024-0.2150.000
95B403LEU0-0.0057.6240.0280.0280.0000.0000.0000.000
96B404PHE00.0072.646-7.721-2.4661.773-1.651-5.3770.020
97B405ALA00.0674.436-1.538-1.3910.000-0.021-0.1250.000
98B406PRO00.0017.0930.4330.4330.0000.0000.0000.000
99B407ASN0-0.03310.1880.0430.0430.0000.0000.0000.000
100B408LEU0-0.0186.417-0.037-0.0370.0000.0000.0000.000
101B409LEU00.0148.9040.4260.4260.0000.0000.0000.000
102B410LEU0-0.0245.806-0.179-0.1790.0000.0000.0000.000
103B411ASP-1-0.8198.7180.9710.9710.0000.0000.0000.000
104B412ARG10.8467.606-1.113-1.1130.0000.0000.0000.000
105B413ASN0-0.0688.6560.1000.1000.0000.0000.0000.000
106B414GLN00.0258.9340.0200.0200.0000.0000.0000.000
107B415GLY00.0405.4980.0100.0100.0000.0000.0000.000
108B416LYS10.9076.054-0.848-0.8480.0000.0000.0000.000
109B417CYS0-0.0568.826-0.140-0.1400.0000.0000.0000.000
110B418VAL0-0.0215.268-0.147-0.1470.0000.0000.0000.000
111B419GLU-1-0.9377.8101.0511.0510.0000.0000.0000.000
112B420GLY00.0017.9810.1030.1030.0000.0000.0000.000
113B421MET0-0.0012.546-1.874-0.5262.733-0.876-3.2040.003
114B422VAL0-0.0314.5970.3420.4680.000-0.005-0.1210.000
115B423GLU-1-0.8826.6401.5741.5740.0000.0000.0000.000
116B424ILE00.0422.698-1.825-0.1580.686-0.616-1.7370.004
117B425PHE0-0.0113.034-0.816-0.0350.055-0.137-0.6990.000
118B426ASP-1-0.7254.4011.0711.1390.001-0.014-0.0550.000
119B427MET0-0.0326.962-0.305-0.3050.0000.0000.0000.000
120B428LEU00.0502.511-1.506-0.5911.025-0.331-1.609-0.001
121B429LEU0-0.0256.451-0.405-0.4050.0000.0000.0000.000
122B430ALA0-0.0178.735-0.244-0.2440.0000.0000.0000.000
123B431THR0-0.0138.935-0.200-0.2000.0000.0000.0000.000
124B432SER0-0.0078.954-0.169-0.1690.0000.0000.0000.000
125B433SER0-0.01710.708-0.164-0.1640.0000.0000.0000.000
126B434ARG10.93813.886-0.617-0.6170.0000.0000.0000.000
127B435PHE00.07310.003-0.068-0.0680.0000.0000.0000.000
128B436ARG10.89913.875-0.667-0.6670.0000.0000.0000.000
129B437MET0-0.08416.307-0.041-0.0410.0000.0000.0000.000
130B438MET0-0.08017.662-0.022-0.0220.0000.0000.0000.000
131B439ASN00.03518.882-0.033-0.0330.0000.0000.0000.000
132B440LEU0-0.04913.204-0.034-0.0340.0000.0000.0000.000
133B441GLN00.02316.802-0.035-0.0350.0000.0000.0000.000
134B442GLY00.05515.1690.0140.0140.0000.0000.0000.000
135B443GLU-1-0.87715.926-0.028-0.0280.0000.0000.0000.000
136B444GLU-1-0.78717.4800.1890.1890.0000.0000.0000.000
137B445PHE0-0.0028.6540.0330.0330.0000.0000.0000.000
138B446VAL00.02113.2830.0140.0140.0000.0000.0000.000
139B447CYS0-0.04714.625-0.028-0.0280.0000.0000.0000.000
140B448LEU00.00313.6050.0090.0090.0000.0000.0000.000
141B449LYS10.8438.8050.4660.4660.0000.0000.0000.000
142B450SER00.02812.144-0.040-0.0400.0000.0000.0000.000
143B451ILE0-0.01715.293-0.001-0.0010.0000.0000.0000.000
144B452ILE0-0.03610.025-0.003-0.0030.0000.0000.0000.000
145B453LEU0-0.00813.5130.0110.0110.0000.0000.0000.000
146B454LEU00.00814.571-0.014-0.0140.0000.0000.0000.000
147B455ASN00.03617.194-0.022-0.0220.0000.0000.0000.000
148B456SER0-0.09013.401-0.023-0.0230.0000.0000.0000.000
149B457GLY00.06516.4680.0420.0420.0000.0000.0000.000
150B458VAL00.00818.680-0.033-0.0330.0000.0000.0000.000
151B459TYR0-0.08620.845-0.027-0.0270.0000.0000.0000.000
152B460THR0-0.01919.143-0.020-0.0200.0000.0000.0000.000
153B461PHE00.07121.811-0.018-0.0180.0000.0000.0000.000
154B462LEU00.06424.8190.0160.0160.0000.0000.0000.000
155B463SER00.00827.385-0.021-0.0210.0000.0000.0000.000
156B464SER0-0.02330.6080.0020.0020.0000.0000.0000.000
157B465THR00.00532.716-0.009-0.0090.0000.0000.0000.000
158B466LEU00.07233.9350.0040.0040.0000.0000.0000.000
159B467LYS11.01531.1800.1190.1190.0000.0000.0000.000
160B468SER0-0.01929.325-0.003-0.0030.0000.0000.0000.000
161B469LEU0-0.04730.2890.0170.0170.0000.0000.0000.000
162B470GLU-1-0.93831.474-0.046-0.0460.0000.0000.0000.000
163B471GLU-1-0.83027.274-0.133-0.1330.0000.0000.0000.000
164B472LYS10.80926.209-0.039-0.0390.0000.0000.0000.000
165B473ASP-1-0.93827.2970.0260.0260.0000.0000.0000.000
166B474HIS0-0.03425.4020.0210.0210.0000.0000.0000.000
167B475ILE00.02122.411-0.001-0.0010.0000.0000.0000.000
168B476HIS00.00724.3500.0130.0130.0000.0000.0000.000
169B477ARG10.96726.2580.0250.0250.0000.0000.0000.000
170B478VAL0-0.05722.4010.0010.0010.0000.0000.0000.000
171B479LEU00.01419.6440.0050.0050.0000.0000.0000.000
172B480ASP-1-0.89523.1250.0870.0870.0000.0000.0000.000
173B481LYS10.88125.3400.0280.0280.0000.0000.0000.000
174B482ILE00.00018.968-0.003-0.0030.0000.0000.0000.000
175B483THR0-0.00222.5990.0240.0240.0000.0000.0000.000
176B484ASP-1-0.91124.0460.0430.0430.0000.0000.0000.000
177B485THR0-0.08022.621-0.009-0.0090.0000.0000.0000.000
178B486LEU00.00918.8780.0020.0020.0000.0000.0000.000
179B487ILE00.00322.9460.0080.0080.0000.0000.0000.000
180B488HIS0-0.05026.4400.0070.0070.0000.0000.0000.000
181B489LEU0-0.01621.097-0.005-0.0050.0000.0000.0000.000
182B490MET0-0.03121.8800.0070.0070.0000.0000.0000.000
183B491ALA0-0.01226.1030.0020.0020.0000.0000.0000.000
184B492LYS10.92526.7450.0050.0050.0000.0000.0000.000
185B493ALA0-0.03925.850-0.006-0.0060.0000.0000.0000.000
186B494GLY0-0.00727.9780.0070.0070.0000.0000.0000.000
187B495LEU0-0.04325.6030.0080.0080.0000.0000.0000.000
188B496THR00.04330.034-0.008-0.0080.0000.0000.0000.000
189B497LEU00.06031.0950.0080.0080.0000.0000.0000.000
190B498GLN0-0.01131.3350.0070.0070.0000.0000.0000.000
191B499GLN00.02428.5390.0070.0070.0000.0000.0000.000
192B500GLN0-0.00126.9810.0150.0150.0000.0000.0000.000
193B501HIS00.05626.0930.0040.0040.0000.0000.0000.000
194B502GLN0-0.06825.9890.0220.0220.0000.0000.0000.000
195B503ARG10.78220.008-0.205-0.2050.0000.0000.0000.000
196B504LEU00.04621.4570.0270.0270.0000.0000.0000.000
197B505ALA00.02021.1580.0260.0260.0000.0000.0000.000
198B506GLN0-0.05720.1320.0450.0450.0000.0000.0000.000
199B507LEU00.02416.3870.0590.0590.0000.0000.0000.000
200B508LEU00.03316.2360.0570.0570.0000.0000.0000.000
201B509LEU0-0.04517.3100.0510.0510.0000.0000.0000.000
202B510ILE0-0.01512.2140.0740.0740.0000.0000.0000.000
203B511LEU00.04512.5400.1490.1490.0000.0000.0000.000
204B512SER0-0.02413.1320.1230.1230.0000.0000.0000.000
205B513HIS0-0.03412.0950.0500.0500.0000.0000.0000.000
206B514ILE00.0307.6100.2380.2380.0000.0000.0000.000
207B515ARG10.9619.048-0.324-0.3240.0000.0000.0000.000
208B516HIS0-0.06110.2100.0780.0780.0000.0000.0000.000
209B517MET0-0.0065.7390.1760.1760.0000.0000.0000.000
210B518SER00.0825.6490.8520.8520.0000.0000.0000.000
211B519ASN0-0.0095.9530.1800.1800.0000.0000.0000.000
212B520LYS10.9526.817-1.490-1.4900.0000.0000.0000.000
213B521GLY00.0082.731-1.0960.0441.063-0.978-1.2250.007
214B522MET00.0363.1100.2040.2090.2230.992-1.2210.000
215B523GLU-1-0.9645.4750.8950.979-0.001-0.002-0.0820.000
216B524HIS0-0.0392.372-2.645-1.0812.144-1.439-2.2700.018
217B525LEU0-0.0082.067-3.269-1.2851.956-0.949-2.9910.004
218B526TYR00.0753.740-1.079-0.8250.020-0.082-0.1930.001
219B527SER00.0037.091-0.341-0.3410.0000.0000.0000.000
220B528MET0-0.0194.817-0.407-0.256-0.001-0.003-0.1470.000
221B529LYS10.9637.372-0.018-0.0180.0000.0000.0000.000
222B530CYS0-0.1129.229-0.055-0.0550.0000.0000.0000.000
223B531LYS10.88310.227-0.830-0.8300.0000.0000.0000.000
224B532ASN0-0.08212.238-0.056-0.0560.0000.0000.0000.000
225B533VAL00.0029.028-0.013-0.0130.0000.0000.0000.000
226B534VAL0-0.0166.1330.0060.0060.0000.0000.0000.000
227B535PRO0-0.0499.5140.0210.0210.0000.0000.0000.000
228B536LEU00.0015.700-0.244-0.2440.0000.0000.0000.000
229B537SER0-0.0158.0690.2990.2990.0000.0000.0000.000
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