Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: VQ7Y1

Calculation Name: 4CTI-C-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4CTI

Chain ID: C

ChEMBL ID:

UniProt ID: P0AEJ4

Base Structure: X-ray

Registration Date: 2023-09-24

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 217
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2176755.385322
FMO2-HF: Nuclear repulsion 2092046.305655
FMO2-HF: Total energy -84709.079667
FMO2-MP2: Total energy -84955.578685


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:280:ILE)


Summations of interaction energy for fragment #1(C:280:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-6.838-4.0225.81-2.129-6.4940
Interaction energy analysis for fragmet #1(C:280:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.035 / q_NPA : -0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3C282ARG10.9350.9623.809-3.590-1.957-0.009-0.651-0.9730.002
4C283PRO00.0170.0142.285-0.620-0.6581.697-0.143-1.5150.000
5C284ILE00.0410.0323.099-0.8070.0590.106-0.179-0.792-0.001
6C285ILE0-0.0100.0055.9700.2630.2630.0000.0000.0000.000
7C286GLU-1-0.793-0.8857.9750.8660.8660.0000.0000.0000.000
8C287LEU0-0.014-0.0057.345-0.019-0.0190.0000.0000.0000.000
9C288SER0-0.033-0.0229.994-0.010-0.0100.0000.0000.0000.000
10C289ASN0-0.020-0.00712.0880.0960.0960.0000.0000.0000.000
11C290THR0-0.050-0.02912.6610.0190.0190.0000.0000.0000.000
12C291PHE0-0.019-0.02411.806-0.002-0.0020.0000.0000.0000.000
13C292ASP-1-0.859-0.92615.939-0.042-0.0420.0000.0000.0000.000
14C293LYS10.9440.96717.227-0.070-0.0700.0000.0000.0000.000
15C294ILE0-0.031-0.02117.1240.0020.0020.0000.0000.0000.000
16C295ALA0-0.044-0.01920.0070.0010.0010.0000.0000.0000.000
17C296GLU-1-0.950-0.96321.8370.0100.0100.0000.0000.0000.000
18C297GLY0-0.0080.00223.8490.0090.0090.0000.0000.0000.000
19C298ASN0-0.022-0.01522.3550.0000.0000.0000.0000.0000.000
20C299LEU00.000-0.00521.963-0.008-0.0080.0000.0000.0000.000
21C300GLU-1-0.859-0.92123.482-0.018-0.0180.0000.0000.0000.000
22C301ALA0-0.071-0.02018.9790.0140.0140.0000.0000.0000.000
23C302GLU-1-0.944-0.97116.1010.1050.1050.0000.0000.0000.000
24C303VAL0-0.010-0.00513.3430.0020.0020.0000.0000.0000.000
25C304PRO00.0430.03410.8240.0020.0020.0000.0000.0000.000
26C305HIS0-0.035-0.0576.837-0.146-0.1460.0000.0000.0000.000
27C306GLN00.0950.0349.565-0.122-0.1220.0000.0000.0000.000
28C307ASN0-0.046-0.01411.907-0.092-0.0920.0000.0000.0000.000
29C308ARG10.8270.8932.432-0.849-0.2050.378-0.231-0.7910.002
30C309ALA00.001-0.0129.241-0.054-0.0540.0000.0000.0000.000
31C310ASP-1-0.734-0.8203.992-1.678-1.4000.001-0.068-0.2100.000
32C311GLU-1-0.851-0.9465.044-1.702-1.7020.0000.0000.0000.000
33C312ILE0-0.012-0.0092.273-0.123-0.6903.637-0.857-2.213-0.003
34C313GLY00.0650.0315.9700.3010.3010.0000.0000.0000.000
35C314ILE0-0.070-0.0319.1750.1530.1530.0000.0000.0000.000
36C315LEU00.0120.0117.9410.1210.1210.0000.0000.0000.000
37C316ALA00.0730.0399.7440.1020.1020.0000.0000.0000.000
38C317LYS10.8100.89911.4980.4430.4430.0000.0000.0000.000
39C318SER0-0.068-0.04613.7480.0640.0640.0000.0000.0000.000
40C319ILE00.0230.02411.8080.0350.0350.0000.0000.0000.000
41C320GLU-1-0.735-0.81415.691-0.043-0.0430.0000.0000.0000.000
42C321ARG10.8770.93916.3080.3020.3020.0000.0000.0000.000
43C322LEU00.0030.01218.5850.0190.0190.0000.0000.0000.000
44C323ARG10.8930.91719.1720.0720.0720.0000.0000.0000.000
45C324ARG10.8400.89520.8350.1010.1010.0000.0000.0000.000
46C325SER0-0.039-0.02723.4550.0100.0100.0000.0000.0000.000
47C326LEU0-0.006-0.00822.1530.0080.0080.0000.0000.0000.000
48C327LYS10.8750.94125.3490.0350.0350.0000.0000.0000.000
49C328GLN0-0.033-0.02527.0750.0070.0070.0000.0000.0000.000
50C329LEU0-0.012-0.01927.6070.0030.0030.0000.0000.0000.000
51C330ALA0-0.082-0.04629.0700.0030.0030.0000.0000.0000.000
52C331ASP-1-0.908-0.94730.954-0.029-0.0290.0000.0000.0000.000
53C332ASP-1-0.892-0.92733.319-0.047-0.0470.0000.0000.0000.000
54C333ARG10.9290.96729.2660.0580.0580.0000.0000.0000.000
55C334THR0-0.009-0.01235.6800.0010.0010.0000.0000.0000.000
56C335LEU00.000-0.00237.9940.0010.0010.0000.0000.0000.000
57C336LEU00.0360.02938.4080.0010.0010.0000.0000.0000.000
58C337MET00.0360.01840.9910.0020.0020.0000.0000.0000.000
59C338ALA0-0.0020.00342.9790.0020.0020.0000.0000.0000.000
60C339GLY00.0190.01043.8670.0020.0020.0000.0000.0000.000
61C340VAL00.0190.00744.8730.0010.0010.0000.0000.0000.000
62C341SER00.0110.00947.2540.0020.0020.0000.0000.0000.000
63C342HIS0-0.046-0.03948.4520.0030.0030.0000.0000.0000.000
64C343ASP-1-0.897-0.95348.526-0.035-0.0350.0000.0000.0000.000
65C344LEU0-0.051-0.02650.8570.0010.0010.0000.0000.0000.000
66C345ARG10.9450.98449.5110.0250.0250.0000.0000.0000.000
67C346THR00.0280.01954.9750.0020.0020.0000.0000.0000.000
68C347PRO0-0.079-0.04155.8000.0010.0010.0000.0000.0000.000
69C348LEU00.0860.04355.3270.0010.0010.0000.0000.0000.000
70C349THR00.0030.00458.5760.0010.0010.0000.0000.0000.000
71C350ARG10.9020.93459.0560.0240.0240.0000.0000.0000.000
72C351ILE00.0030.01160.6260.0010.0010.0000.0000.0000.000
73C352ARG10.8350.89860.1850.0160.0160.0000.0000.0000.000
74C353LEU0-0.028-0.01964.7290.0010.0010.0000.0000.0000.000
75C354ALA0-0.015-0.00866.9150.0010.0010.0000.0000.0000.000
76C355THR0-0.021-0.02767.3810.0000.0000.0000.0000.0000.000
77C356GLU-1-0.929-0.95369.294-0.011-0.0110.0000.0000.0000.000
78C357MET0-0.109-0.03971.7450.0000.0000.0000.0000.0000.000
79C358MET0-0.062-0.01071.3130.0000.0000.0000.0000.0000.000
80C359SER0-0.058-0.05074.7150.0010.0010.0000.0000.0000.000
81C360GLU-1-0.877-0.95076.852-0.010-0.0100.0000.0000.0000.000
82C361GLN0-0.102-0.05078.5780.0000.0000.0000.0000.0000.000
83C362ASP-1-0.870-0.91374.442-0.014-0.0140.0000.0000.0000.000
84C363GLY00.0950.04473.7490.0000.0000.0000.0000.0000.000
85C364TYR00.010-0.00972.5580.0000.0000.0000.0000.0000.000
86C365LEU0-0.0100.00370.421-0.001-0.0010.0000.0000.0000.000
87C366ALA00.0550.03168.843-0.001-0.0010.0000.0000.0000.000
88C367GLU-1-0.874-0.92567.884-0.012-0.0120.0000.0000.0000.000
89C368SER0-0.023-0.01965.8640.0000.0000.0000.0000.0000.000
90C369ILE00.0220.01663.972-0.001-0.0010.0000.0000.0000.000
91C370ASN0-0.029-0.03063.037-0.001-0.0010.0000.0000.0000.000
92C371LYS10.8720.93262.2730.0130.0130.0000.0000.0000.000
93C372ASP-1-0.839-0.91360.352-0.020-0.0200.0000.0000.0000.000
94C373ILE0-0.057-0.02958.553-0.001-0.0010.0000.0000.0000.000
95C374GLU-1-0.799-0.87657.439-0.015-0.0150.0000.0000.0000.000
96C375GLU-1-0.947-0.96455.650-0.022-0.0220.0000.0000.0000.000
97C376CYS0-0.082-0.05254.083-0.002-0.0020.0000.0000.0000.000
98C377ASN0-0.054-0.03252.670-0.002-0.0020.0000.0000.0000.000
99C378ALA00.0420.02552.0230.0000.0000.0000.0000.0000.000
100C379ILE0-0.020-0.00749.380-0.001-0.0010.0000.0000.0000.000
101C380ILE0-0.041-0.02947.913-0.002-0.0020.0000.0000.0000.000
102C381GLU-1-0.934-0.96647.035-0.018-0.0180.0000.0000.0000.000
103C382GLN00.0000.00246.8660.0000.0000.0000.0000.0000.000
104C383PHE00.010-0.01040.561-0.001-0.0010.0000.0000.0000.000
105C384ILE0-0.009-0.01042.583-0.002-0.0020.0000.0000.0000.000
106C385ASP-1-0.834-0.93241.993-0.015-0.0150.0000.0000.0000.000
107C386TYR0-0.023-0.01237.3730.0020.0020.0000.0000.0000.000
108C387LEU0-0.050-0.01237.722-0.001-0.0010.0000.0000.0000.000
109C388ARG10.9040.96937.2490.0180.0180.0000.0000.0000.000
110C389THR0-0.110-0.05435.0080.0010.0010.0000.0000.0000.000
111C399ASP-1-0.755-0.91142.6580.0260.0260.0000.0000.0000.000
112C400LEU0-0.049-0.02743.683-0.002-0.0020.0000.0000.0000.000
113C401ASN00.014-0.02445.808-0.004-0.0040.0000.0000.0000.000
114C402ALA00.0240.03547.352-0.002-0.0020.0000.0000.0000.000
115C403VAL0-0.003-0.00744.952-0.002-0.0020.0000.0000.0000.000
116C404LEU0-0.032-0.01547.915-0.002-0.0020.0000.0000.0000.000
117C405GLY00.0150.00950.139-0.001-0.0010.0000.0000.0000.000
118C406GLU-1-0.858-0.91948.4280.0080.0080.0000.0000.0000.000
119C407VAL0-0.073-0.04649.288-0.001-0.0010.0000.0000.0000.000
120C408ILE0-0.0350.00952.347-0.001-0.0010.0000.0000.0000.000
121C409ALA0-0.0050.01355.830-0.001-0.0010.0000.0000.0000.000
122C417GLU-1-0.921-0.96963.1060.0010.0010.0000.0000.0000.000
123C418ILE0-0.006-0.00557.2990.0000.0000.0000.0000.0000.000
124C419GLU-1-0.814-0.89060.0450.0070.0070.0000.0000.0000.000
125C420THR0-0.024-0.02456.9890.0000.0000.0000.0000.0000.000
126C421ALA0-0.035-0.02056.2520.0010.0010.0000.0000.0000.000
127C422LEU00.0250.01452.0860.0010.0010.0000.0000.0000.000
128C423TYR00.0370.02249.8510.0010.0010.0000.0000.0000.000
129C424PRO0-0.0010.00152.2900.0000.0000.0000.0000.0000.000
130C425GLY00.0240.00349.7980.0020.0020.0000.0000.0000.000
131C426SER0-0.0450.00346.3660.0020.0020.0000.0000.0000.000
132C427ILE0-0.003-0.00742.752-0.001-0.0010.0000.0000.0000.000
133C428GLU-1-0.790-0.88738.1250.0370.0370.0000.0000.0000.000
134C429VAL0-0.059-0.02736.2470.0010.0010.0000.0000.0000.000
135C430LYS10.8670.94032.141-0.034-0.0340.0000.0000.0000.000
136C431MET00.0120.00435.414-0.001-0.0010.0000.0000.0000.000
137C432HIS00.0740.04735.6370.0010.0010.0000.0000.0000.000
138C433PRO00.0340.00738.495-0.003-0.0030.0000.0000.0000.000
139C434LEU00.0250.01341.208-0.001-0.0010.0000.0000.0000.000
140C435SER0-0.021-0.01038.713-0.003-0.0030.0000.0000.0000.000
141C436ILE00.0400.02039.877-0.001-0.0010.0000.0000.0000.000
142C437LYS10.8200.89743.143-0.008-0.0080.0000.0000.0000.000
143C438ARG10.8790.94340.0530.0130.0130.0000.0000.0000.000
144C439ALA00.0050.01043.133-0.001-0.0010.0000.0000.0000.000
145C440VAL00.0530.01445.187-0.001-0.0010.0000.0000.0000.000
146C441ALA00.0080.01248.4160.0000.0000.0000.0000.0000.000
147C442ASN0-0.044-0.03647.106-0.002-0.0020.0000.0000.0000.000
148C443MET0-0.040-0.01647.370-0.001-0.0010.0000.0000.0000.000
149C444VAL00.0490.02650.2070.0000.0000.0000.0000.0000.000
150C445VAL0-0.0120.00352.124-0.001-0.0010.0000.0000.0000.000
151C446ASN0-0.066-0.04751.522-0.002-0.0020.0000.0000.0000.000
152C447ALA0-0.026-0.02553.6220.0000.0000.0000.0000.0000.000
153C448ALA00.0850.06555.8060.0000.0000.0000.0000.0000.000
154C449ARG10.8700.94852.5610.0120.0120.0000.0000.0000.000
155C450TYR0-0.073-0.05555.152-0.001-0.0010.0000.0000.0000.000
156C451GLY0-0.0030.00358.8330.0000.0000.0000.0000.0000.000
157C452ASN0-0.120-0.05560.291-0.001-0.0010.0000.0000.0000.000
158C453GLY00.0540.01963.1060.0000.0000.0000.0000.0000.000
159C454TRP0-0.128-0.05262.5440.0010.0010.0000.0000.0000.000
160C455ILE00.0360.03656.5360.0000.0000.0000.0000.0000.000
161C456LYS10.8080.89757.310-0.006-0.0060.0000.0000.0000.000
162C457VAL00.0090.00652.1790.0000.0000.0000.0000.0000.000
163C458SER0-0.030-0.01552.7960.0010.0010.0000.0000.0000.000
164C459SER0-0.031-0.03349.136-0.001-0.0010.0000.0000.0000.000
165C460GLY00.003-0.00548.9210.0000.0000.0000.0000.0000.000
166C461THR0-0.035-0.03445.3490.0010.0010.0000.0000.0000.000
167C462GLU-1-0.919-0.96744.8790.0300.0300.0000.0000.0000.000
168C463PRO0-0.0350.03440.1070.0030.0030.0000.0000.0000.000
169C464ASN00.022-0.00737.8470.0010.0010.0000.0000.0000.000
170C465ARG10.7870.88639.271-0.041-0.0410.0000.0000.0000.000
171C466ALA00.054-0.00541.078-0.001-0.0010.0000.0000.0000.000
172C467TRP0-0.054-0.00543.0940.0000.0000.0000.0000.0000.000
173C468PHE00.0100.00443.1040.0000.0000.0000.0000.0000.000
174C469GLN00.0390.02247.3630.0000.0000.0000.0000.0000.000
175C470VAL0-0.0050.00350.0630.0000.0000.0000.0000.0000.000
176C471GLU-1-0.889-0.93352.6420.0070.0070.0000.0000.0000.000
177C472ASP-1-0.737-0.88655.4620.0000.0000.0000.0000.0000.000
178C473ASP-1-0.894-0.94458.1940.0010.0010.0000.0000.0000.000
179C474GLY00.0260.02859.767-0.001-0.0010.0000.0000.0000.000
180C475PRO0-0.094-0.04058.6760.0010.0010.0000.0000.0000.000
181C499SER0-0.025-0.03047.7250.0010.0010.0000.0000.0000.000
182C500GLY00.1160.05649.3710.0000.0000.0000.0000.0000.000
183C501THR00.0270.01849.3440.0000.0000.0000.0000.0000.000
184C502GLY00.0390.01847.6930.0010.0010.0000.0000.0000.000
185C503LEU0-0.0060.00443.649-0.001-0.0010.0000.0000.0000.000
186C504GLY00.0750.03344.5610.0000.0000.0000.0000.0000.000
187C505LEU0-0.010-0.01145.3430.0010.0010.0000.0000.0000.000
188C506ALA00.0040.01341.2640.0010.0010.0000.0000.0000.000
189C507ILE0-0.026-0.00140.6180.0000.0000.0000.0000.0000.000
190C508VAL00.001-0.00540.9670.0020.0020.0000.0000.0000.000
191C509GLN0-0.038-0.02937.7390.0030.0030.0000.0000.0000.000
192C510ARG10.9040.94533.4050.0260.0260.0000.0000.0000.000
193C511ILE0-0.039-0.02036.3790.0020.0020.0000.0000.0000.000
194C512VAL0-0.015-0.01337.5650.0040.0040.0000.0000.0000.000
195C513ASP-1-0.841-0.90234.082-0.007-0.0070.0000.0000.0000.000
196C514ASN0-0.047-0.00732.832-0.002-0.0020.0000.0000.0000.000
197C515HIS0-0.103-0.05732.7120.0050.0050.0000.0000.0000.000
198C516ASN0-0.046-0.02129.5230.0010.0010.0000.0000.0000.000
199C517GLY00.0360.02933.4770.0050.0050.0000.0000.0000.000
200C518MET0-0.029-0.01536.834-0.001-0.0010.0000.0000.0000.000
201C519LEU00.0060.00039.4760.0010.0010.0000.0000.0000.000
202C520GLU-1-0.800-0.86342.5850.0120.0120.0000.0000.0000.000
203C521LEU00.0160.00345.7040.0000.0000.0000.0000.0000.000
204C522GLY00.0330.00548.7860.0010.0010.0000.0000.0000.000
205C523THR00.0000.00752.1030.0010.0010.0000.0000.0000.000
206C524SER0-0.016-0.02351.6660.0010.0010.0000.0000.0000.000
207C525GLH0-0.074-0.06649.7330.0020.0020.0000.0000.0000.000
208C526ARG10.8210.90354.777-0.009-0.0090.0000.0000.0000.000
209C527GLY00.0080.03358.1900.0000.0000.0000.0000.0000.000
210C528GLY00.0770.04558.484-0.001-0.0010.0000.0000.0000.000
211C529LEU0-0.020-0.02852.1650.0010.0010.0000.0000.0000.000
212C530SER00.0140.01651.7480.0010.0010.0000.0000.0000.000
213C531ILE0-0.021-0.01747.263-0.001-0.0010.0000.0000.0000.000
214C532ARG10.8170.91046.307-0.012-0.0120.0000.0000.0000.000
215C533ALA0-0.0020.00243.004-0.001-0.0010.0000.0000.0000.000
216C534TRP0-0.061-0.03840.7750.0040.0040.0000.0000.0000.000
217C535LEU00.0180.00036.928-0.001-0.0010.0000.0000.0000.000