FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: VQRR1

Calculation Name: 5HAW-A-Xray372

Preferred Name: Cell division protein ftsZ

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 5HAW

Chain ID: A

ChEMBL ID: CHEMBL3999

UniProt ID: P0A9A6

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2158845.769365
FMO2-HF: Nuclear repulsion 2081752.004659
FMO2-HF: Total energy -77093.764706
FMO2-MP2: Total energy -77320.605153


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:ILE)


Summations of interaction energy for fragment #1(A:7:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-17.803-11.7056.436-5.153-7.382-0.026
Interaction energy analysis for fragmet #1(A:7:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.006 / q_NPA : -0.012
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A9ARG10.9150.9493.697-3.561-1.376-0.016-0.985-1.1840.002
4A10ARG10.8720.9162.063-1.210-0.7613.678-1.811-2.3170.012
5A11GLU-1-0.772-0.8812.372-13.154-9.8532.775-2.331-3.745-0.040
6A12GLU-1-0.809-0.8944.2310.9341.097-0.001-0.026-0.1360.000
7A13ILE0-0.028-0.0106.832-0.150-0.1500.0000.0000.0000.000
8A14LEU0-0.034-0.0115.900-0.059-0.0590.0000.0000.0000.000
9A15GLN00.0170.0128.235-0.091-0.0910.0000.0000.0000.000
10A16ALA00.0380.02410.1820.0320.0320.0000.0000.0000.000
11A17LEU0-0.038-0.02811.6220.0020.0020.0000.0000.0000.000
12A18ALA0-0.002-0.01012.4740.0020.0020.0000.0000.0000.000
13A19GLU-1-0.848-0.91914.101-0.083-0.0830.0000.0000.0000.000
14A20MET0-0.057-0.01716.1730.0290.0290.0000.0000.0000.000
15A21LEU0-0.047-0.02516.0590.0050.0050.0000.0000.0000.000
16A22GLU-1-0.823-0.90418.624-0.189-0.1890.0000.0000.0000.000
17A23SER0-0.0100.01320.3580.0100.0100.0000.0000.0000.000
18A24ASN00.047-0.00222.654-0.003-0.0030.0000.0000.0000.000
19A25GLU-1-0.831-0.90021.5670.0730.0730.0000.0000.0000.000
20A26GLY0-0.0120.01021.4880.0100.0100.0000.0000.0000.000
21A27ALA0-0.039-0.00722.325-0.004-0.0040.0000.0000.0000.000
22A28SER0-0.070-0.04224.4660.0070.0070.0000.0000.0000.000
23A29ARG10.8840.94222.899-0.093-0.0930.0000.0000.0000.000
24A30ILE00.0640.04117.1040.0080.0080.0000.0000.0000.000
25A31THR0-0.039-0.03119.2210.0190.0190.0000.0000.0000.000
26A32THR00.015-0.02616.622-0.006-0.0060.0000.0000.0000.000
27A33ALA00.0160.02017.9900.0270.0270.0000.0000.0000.000
28A34LYS10.8400.89920.057-0.067-0.0670.0000.0000.0000.000
29A35LEU00.0370.01412.681-0.001-0.0010.0000.0000.0000.000
30A36ALA0-0.013-0.00715.1540.0220.0220.0000.0000.0000.000
31A37LYS10.9600.97716.210-0.126-0.1260.0000.0000.0000.000
32A38GLN0-0.052-0.01715.3570.0070.0070.0000.0000.0000.000
33A39VAL0-0.029-0.01611.1510.0020.0020.0000.0000.0000.000
34A40GLY0-0.0020.02113.8390.0260.0260.0000.0000.0000.000
35A41VAL0-0.068-0.03812.6190.0570.0570.0000.0000.0000.000
36A42SER00.0220.00815.816-0.035-0.0350.0000.0000.0000.000
37A43GLU-1-0.785-0.91115.8540.3390.3390.0000.0000.0000.000
38A44ALA0-0.019-0.01015.9190.0500.0500.0000.0000.0000.000
39A45ALA0-0.009-0.00112.8110.0710.0710.0000.0000.0000.000
40A46LEU00.0350.01611.2830.2460.2460.0000.0000.0000.000
41A47TYR0-0.002-0.01210.9680.1390.1390.0000.0000.0000.000
42A48ARG10.8980.9749.742-1.013-1.0130.0000.0000.0000.000
43A49HIS0-0.051-0.0345.8750.4620.4620.0000.0000.0000.000
44A50PHE0-0.0020.0016.3420.0370.0370.0000.0000.0000.000
45A51PRO00.0260.01410.281-0.057-0.0570.0000.0000.0000.000
46A52SER00.024-0.00113.285-0.059-0.0590.0000.0000.0000.000
47A53LYS10.9010.93113.448-0.126-0.1260.0000.0000.0000.000
48A54THR00.0080.00914.430-0.033-0.0330.0000.0000.0000.000
49A55ARG10.9610.96911.355-0.210-0.2100.0000.0000.0000.000
50A56MET0-0.0100.02410.015-0.069-0.0690.0000.0000.0000.000
51A57PHE00.0490.01111.050-0.106-0.1060.0000.0000.0000.000
52A58GLU-1-0.793-0.86512.806-0.025-0.0250.0000.0000.0000.000
53A59GLY00.0210.0279.031-0.062-0.0620.0000.0000.0000.000
54A60LEU0-0.024-0.0169.839-0.135-0.1350.0000.0000.0000.000
55A61ILE0-0.004-0.01211.966-0.030-0.0300.0000.0000.0000.000
56A62GLU-1-0.854-0.92110.658-0.287-0.2870.0000.0000.0000.000
57A63PHE00.0130.01910.637-0.022-0.0220.0000.0000.0000.000
58A64ILE00.0070.00712.4910.0170.0170.0000.0000.0000.000
59A65GLU-1-0.813-0.89016.031-0.186-0.1860.0000.0000.0000.000
60A66GLU-1-0.899-0.94013.374-0.410-0.4100.0000.0000.0000.000
61A67SER0-0.068-0.03314.402-0.001-0.0010.0000.0000.0000.000
62A68LEU00.0040.00116.5040.0260.0260.0000.0000.0000.000
63A69MET0-0.006-0.00519.6400.0230.0230.0000.0000.0000.000
64A70SER0-0.020-0.00517.4960.0210.0210.0000.0000.0000.000
65A71ARG10.8510.91615.8070.4360.4360.0000.0000.0000.000
66A72ILE00.0420.01722.0180.0190.0190.0000.0000.0000.000
67A73ASN00.0060.00023.2830.0230.0230.0000.0000.0000.000
68A74ARG10.9440.99719.9820.3000.3000.0000.0000.0000.000
69A75ILE0-0.0060.00125.2660.0130.0130.0000.0000.0000.000
70A76PHE0-0.044-0.01827.9800.0130.0130.0000.0000.0000.000
71A77ASP-1-0.851-0.93127.526-0.151-0.1510.0000.0000.0000.000
72A78GLU-1-0.949-0.99225.800-0.206-0.2060.0000.0000.0000.000
73A79GLU-1-0.868-0.93230.267-0.126-0.1260.0000.0000.0000.000
74A80LYS10.7870.88732.5700.1380.1380.0000.0000.0000.000
75A81ASP-1-0.789-0.90036.051-0.088-0.0880.0000.0000.0000.000
76A82THR0-0.015-0.01736.296-0.006-0.0060.0000.0000.0000.000
77A83LEU0-0.016-0.01236.527-0.004-0.0040.0000.0000.0000.000
78A84ASN0-0.024-0.01434.188-0.003-0.0030.0000.0000.0000.000
79A85ARG10.8070.89932.3640.1110.1110.0000.0000.0000.000
80A86ILE00.0010.00031.698-0.008-0.0080.0000.0000.0000.000
81A87ARG10.9080.96232.3940.1220.1220.0000.0000.0000.000
82A88LEU0-0.001-0.00229.078-0.005-0.0050.0000.0000.0000.000
83A89VAL00.0280.01827.475-0.013-0.0130.0000.0000.0000.000
84A90MET0-0.040-0.01027.824-0.007-0.0070.0000.0000.0000.000
85A91GLN0-0.009-0.00926.908-0.001-0.0010.0000.0000.0000.000
86A92LEU0-0.017-0.00121.881-0.011-0.0110.0000.0000.0000.000
87A93LEU0-0.006-0.00524.097-0.014-0.0140.0000.0000.0000.000
88A94LEU0-0.017-0.00124.893-0.004-0.0040.0000.0000.0000.000
89A95ALA00.0320.00525.1810.0010.0010.0000.0000.0000.000
90A96PHE0-0.032-0.00816.724-0.015-0.0150.0000.0000.0000.000
91A97ALA00.0300.01021.112-0.013-0.0130.0000.0000.0000.000
92A98GLU-1-0.823-0.89522.787-0.132-0.1320.0000.0000.0000.000
93A99ARG10.8880.94617.5670.3050.3050.0000.0000.0000.000
94A100ASN0-0.081-0.03916.958-0.057-0.0570.0000.0000.0000.000
95A101PRO00.0860.04719.3780.0090.0090.0000.0000.0000.000
96A102GLY00.0260.00218.3220.0170.0170.0000.0000.0000.000
97A103LEU0-0.006-0.01513.8620.0190.0190.0000.0000.0000.000
98A104THR00.0230.01617.9320.0110.0110.0000.0000.0000.000
99A105ARG10.8430.93621.1060.0720.0720.0000.0000.0000.000
100A106ILE0-0.053-0.01915.7690.0200.0200.0000.0000.0000.000
101A107LEU00.0060.00020.1750.0110.0110.0000.0000.0000.000
102A108SER0-0.014-0.00822.1160.0140.0140.0000.0000.0000.000
103A109GLY00.0110.01623.5150.0100.0100.0000.0000.0000.000
104A110HIS0-0.024-0.03224.6350.0190.0190.0000.0000.0000.000
105A111ALA00.0220.00620.2260.0130.0130.0000.0000.0000.000
106A112LEU00.008-0.00718.3610.0180.0180.0000.0000.0000.000
107A113MET0-0.0090.01821.9540.0120.0120.0000.0000.0000.000
108A114PHE0-0.045-0.00622.3000.0150.0150.0000.0000.0000.000
109A115GLU-1-0.824-0.90218.7340.1300.1300.0000.0000.0000.000
110A116ASN00.006-0.01220.982-0.016-0.0160.0000.0000.0000.000
111A117GLU-1-0.870-0.94722.0720.0100.0100.0000.0000.0000.000
112A118ARG10.8650.91716.201-0.064-0.0640.0000.0000.0000.000
113A119LEU0-0.080-0.03917.094-0.010-0.0100.0000.0000.0000.000
114A120ARG10.9270.95420.370-0.024-0.0240.0000.0000.0000.000
115A121ASP-1-0.858-0.91523.400-0.031-0.0310.0000.0000.0000.000
116A122ARG10.7360.83314.2630.1360.1360.0000.0000.0000.000
117A123ILE0-0.018-0.00419.106-0.019-0.0190.0000.0000.0000.000
118A124ASN00.0170.00222.248-0.012-0.0120.0000.0000.0000.000
119A125GLN0-0.021-0.01122.897-0.011-0.0110.0000.0000.0000.000
120A126LEU0-0.0250.00019.645-0.009-0.0090.0000.0000.0000.000
121A127PHE00.0500.01123.156-0.009-0.0090.0000.0000.0000.000
122A128GLU-1-0.744-0.82426.380-0.081-0.0810.0000.0000.0000.000
123A129ARG10.8770.92619.6230.1910.1910.0000.0000.0000.000
124A130ILE00.0140.00623.602-0.003-0.0030.0000.0000.0000.000
125A131GLU-1-0.814-0.90827.327-0.073-0.0730.0000.0000.0000.000
126A132THR0-0.039-0.02229.5870.0060.0060.0000.0000.0000.000
127A133SER0-0.004-0.00827.879-0.001-0.0010.0000.0000.0000.000
128A134LEU0-0.014-0.00530.3030.0020.0020.0000.0000.0000.000
129A135ARG10.7220.82132.7200.0840.0840.0000.0000.0000.000
130A136GLN0-0.039-0.02031.2290.0000.0000.0000.0000.0000.000
131A137ILE0-0.0020.00330.8450.0030.0030.0000.0000.0000.000
132A138LEU0-0.019-0.00535.1310.0040.0040.0000.0000.0000.000
133A139ARG10.9200.93537.9960.0730.0730.0000.0000.0000.000
134A140GLU-1-0.832-0.89036.240-0.098-0.0980.0000.0000.0000.000
135A141ARG10.8480.93539.7180.0740.0740.0000.0000.0000.000
136A142LYS10.8360.92842.1200.0600.0600.0000.0000.0000.000
137A142LEU00.0070.00441.1460.0020.0020.0000.0000.0000.000
138A142ARG10.8560.92335.5420.1040.1040.0000.0000.0000.000
139A142GLU-1-0.771-0.85242.177-0.077-0.0770.0000.0000.0000.000
140A142GLY00.0280.03445.6550.0030.0030.0000.0000.0000.000
141A143LYS10.8190.89545.5830.0690.0690.0000.0000.0000.000
142A148SER00.007-0.00846.397-0.002-0.0020.0000.0000.0000.000
143A149PHE00.0030.00840.5620.0000.0000.0000.0000.0000.000
144A150PRO0-0.093-0.03945.7980.0020.0020.0000.0000.0000.000
145A151VAL00.012-0.01143.5690.0020.0020.0000.0000.0000.000
146A152ASP-1-0.780-0.88242.983-0.056-0.0560.0000.0000.0000.000
147A153GLU-1-0.846-0.94039.748-0.063-0.0630.0000.0000.0000.000
148A154ASN0-0.022-0.02638.430-0.007-0.0070.0000.0000.0000.000
149A155ILE00.0100.01838.562-0.001-0.0010.0000.0000.0000.000
150A156LEU0-0.011-0.00538.944-0.001-0.0010.0000.0000.0000.000
151A157ALA0-0.002-0.00234.867-0.003-0.0030.0000.0000.0000.000
152A158ALA00.0700.03934.854-0.005-0.0050.0000.0000.0000.000
153A159GLN0-0.054-0.02735.8450.0020.0020.0000.0000.0000.000
154A160LEU0-0.040-0.02134.346-0.001-0.0010.0000.0000.0000.000
155A161LEU00.0380.01028.374-0.006-0.0060.0000.0000.0000.000
156A162GLY00.0880.05531.766-0.002-0.0020.0000.0000.0000.000
157A163GLN0-0.038-0.01233.9950.0060.0060.0000.0000.0000.000
158A164VAL00.001-0.00428.176-0.001-0.0010.0000.0000.0000.000
159A165GLU-1-0.881-0.94528.850-0.082-0.0820.0000.0000.0000.000
160A166GLY0-0.010-0.00130.3330.0040.0040.0000.0000.0000.000
161A167SER0-0.075-0.05930.8300.0050.0050.0000.0000.0000.000
162A168LEU00.0060.00924.783-0.002-0.0020.0000.0000.0000.000
163A169ASN00.0350.00328.086-0.001-0.0010.0000.0000.0000.000
164A170ARG10.8780.94930.0160.0680.0680.0000.0000.0000.000
165A171PHE00.0410.04824.1290.0070.0070.0000.0000.0000.000
166A172VAL00.0030.00724.9720.0030.0030.0000.0000.0000.000
167A173ARG10.9490.97127.6760.0510.0510.0000.0000.0000.000
168A174SER0-0.109-0.05630.9480.0040.0040.0000.0000.0000.000
169A175ASP-1-0.878-0.94928.380-0.038-0.0380.0000.0000.0000.000
170A176PHE0-0.033-0.02022.931-0.005-0.0050.0000.0000.0000.000
171A177LYS10.9170.96728.2200.0650.0650.0000.0000.0000.000
172A178TYR0-0.102-0.07331.7340.0000.0000.0000.0000.0000.000
173A179LEU00.0160.01628.708-0.001-0.0010.0000.0000.0000.000
174A180PRO00.0130.00126.8770.0060.0060.0000.0000.0000.000
175A181THR0-0.049-0.05928.3830.0030.0030.0000.0000.0000.000
176A182ALA0-0.0340.00031.1840.0030.0030.0000.0000.0000.000
177A183ASN0-0.048-0.03634.2900.0030.0030.0000.0000.0000.000
178A184PHE0-0.007-0.00333.2860.0020.0020.0000.0000.0000.000
179A185ASP-1-0.909-0.95535.373-0.088-0.0880.0000.0000.0000.000
180A186GLU-1-0.745-0.87137.528-0.074-0.0740.0000.0000.0000.000
181A187TYR0-0.041-0.02136.8390.0020.0020.0000.0000.0000.000
182A188TRP00.028-0.00236.8840.0020.0020.0000.0000.0000.000
183A189ALA00.0010.02338.9980.0020.0020.0000.0000.0000.000
184A190LEU0-0.031-0.01542.1980.0030.0030.0000.0000.0000.000
185A191LEU00.0100.01038.9440.0030.0030.0000.0000.0000.000
186A192SER0-0.042-0.04340.7250.0030.0030.0000.0000.0000.000
187A193ALA0-0.012-0.00442.6430.0010.0010.0000.0000.0000.000
188A194GLN0-0.014-0.00845.5540.0040.0040.0000.0000.0000.000
189A195ILE0-0.057-0.01740.2730.0020.0020.0000.0000.0000.000
190A196LYS10.9720.99044.5240.0480.0480.0000.0000.0000.000