FMODB ID: X138Z
Calculation Name: 1L2Y-A-MD50-64300ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23119.84923 |
---|---|
FMO2-HF: Nuclear repulsion | 18517.668689 |
FMO2-HF: Total energy | -4602.180541 |
FMO2-MP2: Total energy | -4615.606851 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-73.604 | -73.869 | 33.666 | -14.501 | -18.897 | -0.085 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.036 | 0.016 | 2.471 | -2.227 | 2.295 | 2.251 | -2.337 | -4.436 | -0.014 | |
4 | 4 | GLN | 0 | 0.021 | 0.005 | 2.964 | -9.472 | -8.033 | 0.186 | -0.770 | -0.855 | -0.009 | |
5 | 5 | GLN | 0 | 0.040 | 0.032 | 4.606 | 1.297 | 1.410 | -0.001 | -0.012 | -0.099 | 0.000 | |
6 | 6 | GLN | 0 | -0.046 | -0.032 | 1.838 | -15.819 | -17.914 | 11.216 | -3.981 | -5.140 | -0.030 | |
7 | 7 | GLN | 0 | 0.001 | 0.003 | 1.979 | 1.179 | 0.423 | 8.394 | -2.919 | -4.718 | 0.028 | |
8 | 8 | GLN | 0 | 0.002 | 0.006 | 4.302 | -0.964 | -0.843 | 0.001 | -0.011 | -0.111 | 0.000 | |
9 | 9 | GLN | 0 | -0.056 | -0.030 | 7.345 | 0.256 | 0.256 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.856 | -0.897 | 1.759 | -47.854 | -51.463 | 11.619 | -4.471 | -3.538 | -0.060 |