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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: X13ZX

Calculation Name: 2FSZ-B-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 4-hydroxytamoxifen

ligand 3-letter code: OHT

PDB ID: 2FSZ

Chain ID: B

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge OHT=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2966116.585639
FMO2-HF: Nuclear repulsion 2869361.850492
FMO2-HF: Total energy -96754.735147
FMO2-MP2: Total energy -97026.282148


3D Structure
Snapshot
 
Ligand structure

OHT

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-251.521-222.066100.262-45.518-84.2010.204


Interactive mode: IFIE and PIEDA for fragment #235(B:102:OHT)


Summations of interaction energy for fragment #235(B:102:OHT)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-251.521-222.066100.262-45.518-84.201-0.204
Interaction energy analysis for fragmet #235(B:102:OHT)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.798 / q_NPA : 0.835
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1B264SER10.8570.91527.8029.9449.9440.0000.0000.0000.000
2B265PRO00.1310.06626.235-0.225-0.2250.0000.0000.0000.000
3B266GLU-1-0.885-0.93525.434-9.138-9.1380.0000.0000.0000.000
4B267GLN00.0560.02125.901-0.345-0.3450.0000.0000.0000.000
5B268LEU0-0.0120.00021.480-0.239-0.2390.0000.0000.0000.000
6B269VAL0-0.006-0.01221.356-0.408-0.4080.0000.0000.0000.000
7B270LEU00.009-0.00120.895-0.318-0.3180.0000.0000.0000.000
8B271THR00.0230.00520.512-0.173-0.1730.0000.0000.0000.000
9B272LEU0-0.033-0.03116.631-0.510-0.5100.0000.0000.0000.000
10B273LEU0-0.080-0.03916.454-0.438-0.4380.0000.0000.0000.000
11B274GLU-1-0.952-0.96117.461-11.754-11.7540.0000.0000.0000.000
12B275ALA0-0.054-0.02116.019-0.313-0.3130.0000.0000.0000.000
13B276GLU-1-0.834-0.89411.299-18.186-18.1860.0000.0000.0000.000
14B277PRO0-0.025-0.0148.7020.0930.0930.0000.0000.0000.000
15B278PRO0-0.0180.00610.7160.8670.8670.0000.0000.0000.000
16B279HIS00.0450.0108.335-1.810-1.8100.0000.0000.0000.000
17B280VAL0-0.019-0.0056.0040.2850.2850.0000.0000.0000.000
18B281LEU00.0090.0077.7280.2930.2930.0000.0000.0000.000
19B282ILE0-0.058-0.0566.501-1.631-1.6310.0000.0000.0000.000
20B283SER00.0240.0219.6740.7830.7830.0000.0000.0000.000
21B284ARG10.8880.95011.97114.04214.0420.0000.0000.0000.000
22B285PRO0-0.025-0.00912.2450.2840.2840.0000.0000.0000.000
23B286SER0-0.034-0.01315.1230.6290.6290.0000.0000.0000.000
24B287ALA00.0370.01517.8750.3250.3250.0000.0000.0000.000
25B288PRO00.0010.01516.230-0.484-0.4840.0000.0000.0000.000
26B289PHE00.000-0.01110.165-0.367-0.3670.0000.0000.0000.000
27B290THR00.0060.02211.5880.8190.8190.0000.0000.0000.000
28B291GLU-1-0.799-0.9066.717-19.967-19.9670.0000.0000.0000.000
29B292ALA00.016-0.0107.415-1.727-1.7270.0000.0000.0000.000
30B293SER00.0210.0058.792-2.028-2.0280.0000.0000.0000.000
31B294MET00.0320.0405.221-1.625-1.6250.0000.0000.0000.000
32B295MET00.0840.0442.199-3.484-1.9582.867-1.008-3.3850.007
33B296MET0-0.0100.0144.380-4.831-4.580-0.001-0.023-0.2290.000
34B297SER0-0.037-0.0326.277-2.705-2.7050.0000.0000.0000.000
35B298LEU00.0580.0202.317-5.466-2.3271.324-0.853-3.6100.002
36B299THR00.009-0.0012.146-12.725-6.9494.334-3.535-6.575-0.026
37B300LYS10.9050.9643.26220.62520.8560.0610.479-0.770-0.002
38B301LEU0-0.072-0.0381.956-0.817-0.1082.385-0.855-2.2390.007
39B302ALA00.0560.0282.068-4.065-1.5536.169-2.380-6.3010.012
40B303ASP-1-0.827-0.9101.646-128.559-130.98919.667-9.839-7.398-0.111
41B304LYS10.8680.9354.13234.73035.0230.000-0.096-0.1960.000
42B305GLU-1-0.769-0.8691.561-64.010-73.77027.658-11.834-6.063-0.117
43B306LEU00.0120.0212.6492.0612.9710.915-0.326-1.499-0.004
44B307VAL0-0.018-0.0036.7193.8843.8840.0000.0000.0000.000
45B308HIS0-0.022-0.0207.9663.3703.3700.0000.0000.0000.000
46B309MET0-0.043-0.0107.1482.6392.6390.0000.0000.0000.000
47B310ILE00.0210.0228.6302.4292.4290.0000.0000.0000.000
48B311SER0-0.027-0.03511.6722.0782.0780.0000.0000.0000.000
49B312TRP0-0.0060.01411.7691.0291.0290.0000.0000.0000.000
50B313ALA00.0510.02213.5851.2431.2430.0000.0000.0000.000
51B314LYS10.9120.94515.23419.51719.5170.0000.0000.0000.000
52B315LYS10.9280.97716.07916.84116.8410.0000.0000.0000.000
53B316ILE00.0050.01715.2090.8890.8890.0000.0000.0000.000
54B317PRO0-0.035-0.03219.3450.0230.0230.0000.0000.0000.000
55B318GLY00.0780.03823.1500.0890.0890.0000.0000.0000.000
56B319PHE00.0050.00614.636-0.015-0.0150.0000.0000.0000.000
57B320VAL0-0.026-0.02819.944-0.269-0.2690.0000.0000.0000.000
58B321GLU-1-0.978-0.97521.099-11.137-11.1370.0000.0000.0000.000
59B322LEU0-0.072-0.01919.1500.5120.5120.0000.0000.0000.000
60B323SER00.0130.00320.943-0.458-0.4580.0000.0000.0000.000
61B324LEU00.0610.00516.505-0.515-0.5150.0000.0000.0000.000
62B325PHE00.0360.02016.316-1.320-1.3200.0000.0000.0000.000
63B326ASP-1-0.816-0.91816.138-15.580-15.5800.0000.0000.0000.000
64B327GLN0-0.095-0.03915.088-1.557-1.5570.0000.0000.0000.000
65B328VAL0-0.001-0.01710.937-1.241-1.2410.0000.0000.0000.000
66B329ARG10.9751.01711.48015.11415.1140.0000.0000.0000.000
67B330LEU0-0.015-0.00812.800-0.995-0.9950.0000.0000.0000.000
68B331LEU0-0.007-0.0179.335-0.927-0.9270.0000.0000.0000.000
69B332GLU-1-0.973-0.9868.040-29.837-29.8370.0000.0000.0000.000
70B333SER0-0.043-0.0268.636-1.196-1.1960.0000.0000.0000.000
71B334CYS0-0.0340.03710.8080.0310.0310.0000.0000.0000.000
72B335TRP00.023-0.0021.941-9.072-7.5913.011-1.319-3.173-0.014
73B336MET00.0230.0232.567-5.857-3.1903.325-1.167-4.8250.004
74B337GLU-1-0.841-0.9225.249-18.904-18.744-0.001-0.004-0.1560.000
75B338VAL0-0.010-0.0097.0221.7901.7900.0000.0000.0000.000
76B339LEU0-0.030-0.0032.660-2.7990.8402.551-1.451-4.7390.011
77B340MET00.0110.0092.6820.3053.0002.000-1.044-3.651-0.007
78B341MET00.0160.0273.6092.2742.3450.0020.071-0.1440.000
79B342GLY00.0080.0095.3331.2651.2650.0000.0000.0000.000
80B343LEU0-0.030-0.0182.342-2.1620.2842.231-1.195-3.4820.012
81B344MET0-0.023-0.0084.3440.6760.8460.000-0.042-0.1290.000
82B345TRP00.0120.0077.2581.0751.0750.0000.0000.0000.000
83B346ARG10.8010.9112.04317.63917.3073.979-1.451-2.1960.015
84B347SER0-0.012-0.0247.4110.2400.2400.0000.0000.0000.000
85B348ILE0-0.063-0.02010.0980.3900.3900.0000.0000.0000.000
86B349ASP-1-0.877-0.93912.703-10.988-10.9880.0000.0000.0000.000
87B350HIS0-0.067-0.02913.4490.5220.5220.0000.0000.0000.000
88B351PRO00.003-0.00913.739-0.393-0.3930.0000.0000.0000.000
89B352GLY00.0120.00712.7180.1910.1910.0000.0000.0000.000
90B353LYS10.9120.95010.98112.04212.0420.0000.0000.0000.000
91B354LEU00.0210.0174.419-0.1560.012-0.001-0.007-0.1600.000
92B355ILE0-0.025-0.0128.199-0.292-0.2920.0000.0000.0000.000
93B356PHE00.0230.0122.090-4.708-1.5752.537-1.277-4.3930.013
94B357ALA00.024-0.0055.019-2.217-2.125-0.001-0.005-0.0860.000
95B358PRO0-0.008-0.0067.7910.6740.6740.0000.0000.0000.000
96B359ASP-1-0.878-0.91511.463-14.262-14.2620.0000.0000.0000.000
97B360LEU0-0.117-0.0696.556-0.122-0.1220.0000.0000.0000.000
98B361VAL00.000-0.0088.962-0.206-0.2060.0000.0000.0000.000
99B362LEU0-0.0180.0046.8360.3530.3530.0000.0000.0000.000
100B363ASP-1-0.902-0.9499.602-12.775-12.7750.0000.0000.0000.000
101B364ARG10.9400.9679.49011.99611.9960.0000.0000.0000.000
102B365ASP-1-0.911-0.98410.047-12.453-12.4530.0000.0000.0000.000
103B366GLU-1-0.747-0.90110.440-14.517-14.5170.0000.0000.0000.000
104B367GLY00.040-0.0207.188-0.715-0.7150.0000.0000.0000.000
105B368LYS10.8490.9387.30312.07412.0740.0000.0000.0000.000
106B369CYS0-0.075-0.0329.3890.5210.5210.0000.0000.0000.000
107B370VAL0-0.075-0.0353.895-0.745-0.4880.001-0.033-0.2240.000
108B371GLU-1-0.831-0.9185.666-15.572-15.5720.0000.0000.0000.000
109B372GLY00.0500.0086.580-1.356-1.3560.0000.0000.0000.000
110B373ILE0-0.085-0.0012.350-0.706-0.3291.890-0.471-1.796-0.002
111B374LEU0-0.001-0.0104.8950.5180.616-0.001-0.007-0.0910.000
112B375GLU-1-0.903-0.9418.133-14.528-14.5280.0000.0000.0000.000
113B376ILE00.0120.0072.298-1.586-0.2251.711-0.720-2.3520.004
114B377PHE0-0.011-0.0152.482-1.2030.0590.351-0.216-1.3970.001
115B378ASP-1-0.819-0.9125.219-13.104-13.072-0.001-0.002-0.0290.000
116B379MET0-0.0420.0086.7240.2570.2570.0000.0000.0000.000
117B380LEU00.0150.0012.0441.695-1.3255.523-0.538-1.9650.000
118B381LEU00.0040.0246.3670.5240.5240.0000.0000.0000.000
119B382ALA0-0.0090.0039.0670.5560.5560.0000.0000.0000.000
120B383THR0-0.022-0.0249.6570.5620.5620.0000.0000.0000.000
121B384THR0-0.024-0.0369.0450.2350.2350.0000.0000.0000.000
122B385SER0-0.024-0.03811.6490.3590.3590.0000.0000.0000.000
123B386ARG10.9480.99614.40311.18411.1840.0000.0000.0000.000
124B387PHE00.0490.00810.9100.4220.4220.0000.0000.0000.000
125B388ARG10.9210.98813.92211.75111.7510.0000.0000.0000.000
126B389GLU-1-0.974-0.98316.766-9.676-9.6760.0000.0000.0000.000
127B390LEU0-0.058-0.02117.8790.3810.3810.0000.0000.0000.000
128B391LYS10.9761.00119.3319.1899.1890.0000.0000.0000.000
129B392LEU0-0.0100.00313.3940.1800.1800.0000.0000.0000.000
130B393GLN0-0.016-0.02017.037-0.061-0.0610.0000.0000.0000.000
131B394HIS00.0190.01013.615-0.195-0.1950.0000.0000.0000.000
132B395LYS10.9690.97116.4889.9669.9660.0000.0000.0000.000
133B396GLU-1-0.711-0.82618.002-10.799-10.7990.0000.0000.0000.000
134B397TYR00.0160.0079.310-0.629-0.6290.0000.0000.0000.000
135B398LEU0-0.0010.01113.755-0.622-0.6220.0000.0000.0000.000
136B399CYS0-0.046-0.00915.373-0.293-0.2930.0000.0000.0000.000
137B400VAL00.0660.02112.675-0.292-0.2920.0000.0000.0000.000
138B401LYS10.8180.9019.12717.95417.9540.0000.0000.0000.000
139B402ALA00.0260.00712.279-0.885-0.8850.0000.0000.0000.000
140B403MET0-0.030-0.01615.219-0.070-0.0700.0000.0000.0000.000
141B404ILE0-0.031-0.00310.1170.0120.0120.0000.0000.0000.000
142B405LEU00.012-0.02013.005-0.633-0.6330.0000.0000.0000.000
143B406LEU0-0.027-0.03114.557-0.216-0.2160.0000.0000.0000.000
144B407ASN0-0.028-0.01517.1050.8000.8000.0000.0000.0000.000
145B408SER0-0.044-0.01713.348-0.291-0.2910.0000.0000.0000.000
146B409SER00.0030.00315.3740.1560.1560.0000.0000.0000.000
147B410MET0-0.0400.00117.5270.7200.7200.0000.0000.0000.000
148B411TYR0-0.007-0.00121.178-0.351-0.3510.0000.0000.0000.000
149B412PRO00.047-0.00524.0830.1710.1710.0000.0000.0000.000
150B413LEU0-0.017-0.00320.9880.3200.3200.0000.0000.0000.000
151B414VAL00.0410.03124.8740.1590.1590.0000.0000.0000.000
152B415THR0-0.005-0.02027.2490.2860.2860.0000.0000.0000.000
153B416ALA0-0.078-0.03427.5000.3410.3410.0000.0000.0000.000
154B417THR0-0.061-0.02327.9210.0740.0740.0000.0000.0000.000
155B418GLN0-0.069-0.05530.5730.4440.4440.0000.0000.0000.000
156B419ASP-1-0.910-0.93730.856-9.810-9.8100.0000.0000.0000.000
157B420ALA00.0070.00029.760-0.345-0.3450.0000.0000.0000.000
158B421ASP-1-0.711-0.80828.001-10.469-10.4690.0000.0000.0000.000
159B422SER0-0.043-0.02030.1440.1140.1140.0000.0000.0000.000
160B423SER0-0.004-0.02125.5790.0050.0050.0000.0000.0000.000
161B424ARG10.9120.94026.9468.8248.8240.0000.0000.0000.000
162B425LYS10.9360.95925.42911.36411.3640.0000.0000.0000.000
163B426LEU00.0810.05121.6800.0270.0270.0000.0000.0000.000
164B427ALA00.0810.03823.865-0.115-0.1150.0000.0000.0000.000
165B428HIS0-0.0350.00126.2370.0940.0940.0000.0000.0000.000
166B429LEU00.022-0.00221.5410.0930.0930.0000.0000.0000.000
167B430LEU00.0130.00820.206-0.130-0.1300.0000.0000.0000.000
168B431ASN00.0200.00422.898-0.007-0.0070.0000.0000.0000.000
169B432ALA00.0100.01525.0730.2400.2400.0000.0000.0000.000
170B433VAL0-0.018-0.02318.6490.1710.1710.0000.0000.0000.000
171B434THR0-0.027-0.02121.849-0.025-0.0250.0000.0000.0000.000
172B435ASP-1-0.916-0.95923.299-9.367-9.3670.0000.0000.0000.000
173B436ALA0-0.102-0.05222.6180.3000.3000.0000.0000.0000.000
174B437LEU00.0370.01319.1260.1790.1790.0000.0000.0000.000
175B438VAL00.0100.01222.4960.2240.2240.0000.0000.0000.000
176B439TRP00.0730.01925.3650.0920.0920.0000.0000.0000.000
177B440VAL0-0.049-0.03921.7090.2450.2450.0000.0000.0000.000
178B441ILE0-0.020-0.00821.8620.1990.1990.0000.0000.0000.000
179B442ALA00.0210.02025.2850.2600.2600.0000.0000.0000.000
180B443LYS10.7860.92424.7279.8299.8290.0000.0000.0000.000
181B444SER0-0.017-0.01926.553-0.020-0.0200.0000.0000.0000.000
182B445GLY0-0.031-0.00528.5990.1220.1220.0000.0000.0000.000
183B446ILE0-0.024-0.00327.2310.1870.1870.0000.0000.0000.000
184B447SER00.0430.00931.445-0.029-0.0290.0000.0000.0000.000
185B448SER00.0860.03632.032-0.102-0.1020.0000.0000.0000.000
186B449GLN00.0570.01031.649-0.354-0.3540.0000.0000.0000.000
187B450GLN00.0600.01029.415-0.109-0.1090.0000.0000.0000.000
188B451GLN0-0.0190.00527.629-0.392-0.3920.0000.0000.0000.000
189B452SER0-0.018-0.01026.819-0.262-0.2620.0000.0000.0000.000
190B453MET0-0.052-0.01026.690-0.256-0.2560.0000.0000.0000.000
191B454ARG10.7400.84620.5499.8529.8520.0000.0000.0000.000
192B455LEU00.0280.02622.091-0.392-0.3920.0000.0000.0000.000
193B456ALA00.0310.01321.939-0.404-0.4040.0000.0000.0000.000
194B457ASN00.000-0.01421.103-0.346-0.3460.0000.0000.0000.000
195B458LEU0-0.010-0.01417.367-0.397-0.3970.0000.0000.0000.000
196B459LEU00.016-0.00517.142-0.595-0.5950.0000.0000.0000.000
197B460MET0-0.0050.00218.095-0.395-0.3950.0000.0000.0000.000
198B461LEU0-0.033-0.00414.437-0.186-0.1860.0000.0000.0000.000
199B462LEU0-0.018-0.01113.556-0.780-0.7800.0000.0000.0000.000
200B463SER0-0.0010.00213.801-0.848-0.8480.0000.0000.0000.000
201B464HIS00.0280.00812.073-0.743-0.7430.0000.0000.0000.000
202B465VAL00.0110.0198.511-0.644-0.6440.0000.0000.0000.000
203B466ARG10.9050.9428.91416.83816.8380.0000.0000.0000.000
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