Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

tag_button

FMODB ID: X152Z

Calculation Name: 2ASK-A-Xray42

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2ASK

Chain ID: A

ChEMBL ID:

UniProt ID: Q5T4W7

Base Structure: X-ray

Registration Date: 2019-02-15

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 188
LigandCharge SO4=-2
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -835060.993231
FMO2-HF: Nuclear repulsion 785450.54634
FMO2-HF: Total energy -49610.446892
FMO2-MP2: Total energy -49742.181588


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:12:ACE)


Summations of interaction energy for fragment #1(A:12:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
3.976-3.21911.432-1.683-2.555-0.018
Interaction energy analysis for fragmet #1(A:12:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.003 / q_NPA : -0.048
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A14ARG10.8870.9403.6870.3461.757-0.032-0.401-0.979-0.005
4A15GLY00.0090.0285.4550.4300.4300.0000.0000.0000.000
5A16CYS-1-0.772-0.8657.475-0.939-0.9390.0000.0000.0000.000
6A17ARG10.8010.8814.2622.4472.644-0.001-0.063-0.1320.000
7A18LEU00.0950.02810.3680.0600.0600.0000.0000.0000.000
8A19ARG10.7170.8827.5711.0831.0830.0000.0000.0000.000
9A20SER0-0.054-0.03612.9910.1140.1140.0000.0000.0000.000
10A21GLN00.000-0.00515.179-0.051-0.0510.0000.0000.0000.000
11A22LEU0-0.054-0.01617.8720.0200.0200.0000.0000.0000.000
12A23VAL00.0190.00321.3420.0020.0020.0000.0000.0000.000
13A24PRO0-0.0100.00123.8410.0060.0060.0000.0000.0000.000
14A25VAL00.0890.04727.643-0.005-0.0050.0000.0000.0000.000
15A26ARG10.8280.92229.6110.0890.0890.0000.0000.0000.000
16A27ALA0-0.064-0.02526.8890.0040.0040.0000.0000.0000.000
17A28LEU00.0110.02425.085-0.007-0.0070.0000.0000.0000.000
18A29GLY00.0210.02528.285-0.001-0.0010.0000.0000.0000.000
19A30LEU0-0.028-0.01430.1060.0030.0030.0000.0000.0000.000
20A31GLY0-0.0130.00633.3180.0050.0050.0000.0000.0000.000
21A32HIS0-0.0150.00634.3170.0050.0050.0000.0000.0000.000
22A33ARG10.9320.94234.5880.0570.0570.0000.0000.0000.000
23A34SER00.010-0.00133.667-0.001-0.0010.0000.0000.0000.000
24A35ASP-1-0.828-0.93031.623-0.086-0.0860.0000.0000.0000.000
25A36GLU-1-0.777-0.78929.746-0.099-0.0990.0000.0000.0000.000
26A37LEU0-0.023-0.01124.639-0.005-0.0050.0000.0000.0000.000
27A38VAL00.0040.01025.1090.0050.0050.0000.0000.0000.000
28A39ARG10.8000.87517.0460.2410.2410.0000.0000.0000.000
29A40PHE00.0080.00920.2190.0060.0060.0000.0000.0000.000
30A41ARG10.8860.92016.7770.2450.2450.0000.0000.0000.000
31A42PHE0-0.119-0.05814.7950.0420.0420.0000.0000.0000.000
32A43CYS-1-0.714-0.83014.232-0.457-0.4570.0000.0000.0000.000
33A44SER0-0.094-0.06711.8070.0620.0620.0000.0000.0000.000
34A45GLY00.0150.00210.146-0.203-0.2030.0000.0000.0000.000
35A46SER0-0.087-0.0519.5750.1480.1480.0000.0000.0000.000
36A47CYS-1-0.602-0.79911.088-0.433-0.4330.0000.0000.0000.000
37A48ARG10.7050.86111.6520.2620.2620.0000.0000.0000.000
38A49ARG10.8850.9187.5110.4040.4040.0000.0000.0000.000
39A50ALA0-0.029-0.02113.8140.0330.0330.0000.0000.0000.000
40A51ARG10.7770.90916.5430.0880.0880.0000.0000.0000.000
41A52SER0-0.001-0.01519.0090.0230.0230.0000.0000.0000.000
42A53PRO0-0.001-0.02722.5850.0040.0040.0000.0000.0000.000
43A54HIS0-0.0180.00825.1720.0100.0100.0000.0000.0000.000
44A55ASP-1-0.700-0.83120.912-0.099-0.0990.0000.0000.0000.000
45A56LEU00.0270.01319.3140.0030.0030.0000.0000.0000.000
46A57SER0-0.031-0.02622.5480.0070.0070.0000.0000.0000.000
47A58LEU0-0.039-0.00724.4640.0040.0040.0000.0000.0000.000
48A59ALA00.0380.00820.7820.0010.0010.0000.0000.0000.000
49A60SER0-0.017-0.00322.7630.0060.0060.0000.0000.0000.000
50A61LEU0-0.020-0.01824.9300.0040.0040.0000.0000.0000.000
51A62LEU0-0.063-0.03123.8040.0020.0020.0000.0000.0000.000
52A63GLY0-0.0070.00524.1450.0010.0010.0000.0000.0000.000
53A64ALA0-0.040-0.01524.8270.0060.0060.0000.0000.0000.000
54A65GLY0-0.052-0.01328.2270.0020.0020.0000.0000.0000.000
55A66ALA0-0.026-0.00530.0970.0010.0010.0000.0000.0000.000
56A67LEU00.0120.01128.5680.0000.0000.0000.0000.0000.000
57A68ARG10.9600.99931.6490.0300.0300.0000.0000.0000.000
58A69PRO00.024-0.00931.162-0.002-0.0020.0000.0000.0000.000
59A70PRO0-0.0050.02030.6980.0030.0030.0000.0000.0000.000
60A71PRO00.001-0.00332.820-0.002-0.0020.0000.0000.0000.000
61A72GLY00.0250.00432.086-0.002-0.0020.0000.0000.0000.000
62A73SER0-0.053-0.03226.4290.0030.0030.0000.0000.0000.000
63A74ARG10.9550.97722.6420.0840.0840.0000.0000.0000.000
64A75PRO00.0110.02725.361-0.010-0.0100.0000.0000.0000.000
65A76VAL00.0270.03120.6930.0030.0030.0000.0000.0000.000
66A77SER0-0.057-0.05320.2640.0040.0040.0000.0000.0000.000
67A78GLN00.0220.00314.737-0.009-0.0090.0000.0000.0000.000
68A79PRO0-0.0500.01817.5660.0040.0040.0000.0000.0000.000
69A80CYS0-0.055-0.03217.343-0.010-0.0100.0000.0000.0000.000
70A81CYS-1-0.715-0.79313.565-0.540-0.5400.0000.0000.0000.000
71A82ARG10.7990.89315.7900.2510.2510.0000.0000.0000.000
72A83PRO00.1450.03217.9760.0030.0030.0000.0000.0000.000
73A84THR0-0.074-0.04418.8550.0340.0340.0000.0000.0000.000
74A85ARG10.6550.72620.7980.1750.1750.0000.0000.0000.000
75A86TYR00.0220.00821.484-0.016-0.0160.0000.0000.0000.000
76A87GLU-1-0.812-0.89922.660-0.168-0.1680.0000.0000.0000.000
77A88ALA0-0.004-0.00925.716-0.005-0.0050.0000.0000.0000.000
78A89VAL0-0.0090.02325.612-0.005-0.0050.0000.0000.0000.000
79A90SER0-0.045-0.04028.2120.0100.0100.0000.0000.0000.000
80A91PHE0-0.026-0.00430.589-0.005-0.0050.0000.0000.0000.000
81A92MET0-0.0010.01932.9770.0050.0050.0000.0000.0000.000
82A93ASP-1-0.764-0.86336.137-0.065-0.0650.0000.0000.0000.000
83A94VAL00.0630.01038.2620.0030.0030.0000.0000.0000.000
84A95ASN0-0.096-0.04640.7900.0050.0050.0000.0000.0000.000
85A96SER0-0.021-0.02040.4030.0020.0020.0000.0000.0000.000
86A97THR0-0.031-0.00740.9280.0020.0020.0000.0000.0000.000
87A98TRP0-0.0140.00533.398-0.004-0.0040.0000.0000.0000.000
88A99ARG10.8410.92435.4940.0710.0710.0000.0000.0000.000
89A100THR00.0410.01432.093-0.001-0.0010.0000.0000.0000.000
90A101VAL0-0.0100.02430.3040.0060.0060.0000.0000.0000.000
91A102ASP-1-0.880-0.97529.980-0.105-0.1050.0000.0000.0000.000
92A103ARG10.8140.89226.0240.1340.1340.0000.0000.0000.000
93A104LEU00.0290.02626.048-0.005-0.0050.0000.0000.0000.000
94A105SER0-0.001-0.00921.432-0.016-0.0160.0000.0000.0000.000
95A106ALA00.0640.04218.4530.0210.0210.0000.0000.0000.000
96A107THR0-0.072-0.04618.9940.0020.0020.0000.0000.0000.000
97A108ALA0-0.050-0.03516.457-0.001-0.0010.0000.0000.0000.000
98A109CYS-1-0.651-0.77913.792-0.456-0.4560.0000.0000.0000.000
99A110GLY0-0.091-0.05215.5220.0170.0170.0000.0000.0000.000
100A111CYS-1-0.472-0.62114.145-0.360-0.3600.0000.0000.0000.000
101A112LEU0-0.221-0.11516.6590.0520.0520.0000.0000.0000.000
102A113GLY-1-0.814-0.88720.420-0.130-0.1300.0000.0000.0000.000
103A502SO4-2-1.710-1.8168.555-0.570-0.5700.0000.0000.0000.000
104A503SO4-2-1.718-1.8419.944-0.730-0.7300.0000.0000.0000.000
105A504SO4-2-1.606-1.77436.587-0.144-0.1440.0000.0000.0000.000
106A505SO4-2-1.660-1.81416.359-0.510-0.5100.0000.0000.0000.000
107A506SO4-2-1.839-1.93016.411-0.130-0.1300.0000.0000.0000.000
108A507HOH0-0.001-0.00131.7340.0000.0000.0000.0000.0000.000
109A508HOH0-0.018-0.02436.3260.0020.0020.0000.0000.0000.000
110A509HOH0-0.024-0.01821.0860.0040.0040.0000.0000.0000.000
111A511HOH0-0.031-0.01626.9590.0000.0000.0000.0000.0000.000
112A512HOH0-0.037-0.02219.6640.0030.0030.0000.0000.0000.000
113A513HOH00.0380.02512.273-0.010-0.0100.0000.0000.0000.000
114A514HOH0-0.026-0.0249.808-0.049-0.0490.0000.0000.0000.000
115A515HOH0-0.059-0.03335.3170.0010.0010.0000.0000.0000.000
116A516HOH0-0.008-0.00815.196-0.010-0.0100.0000.0000.0000.000
117A518HOH0-0.0040.00511.1780.0040.0040.0000.0000.0000.000
118A520HOH00.0060.0079.004-0.119-0.1190.0000.0000.0000.000
119A521HOH0-0.037-0.01020.504-0.002-0.0020.0000.0000.0000.000
120A522HOH0-0.048-0.04014.758-0.001-0.0010.0000.0000.0000.000
121A523HOH0-0.035-0.02034.9690.0010.0010.0000.0000.0000.000
122A524HOH00.026-0.00518.6760.0070.0070.0000.0000.0000.000
123A525HOH0-0.017-0.01325.9620.0020.0020.0000.0000.0000.000
124A526HOH0-0.010-0.02629.2140.0000.0000.0000.0000.0000.000
125A527HOH0-0.0020.00524.770-0.003-0.0030.0000.0000.0000.000
126A528HOH00.0160.01715.145-0.008-0.0080.0000.0000.0000.000
127A529HOH00.0320.02034.020-0.002-0.0020.0000.0000.0000.000
128A530HOH00.0140.0392.1393.578-5.22511.465-1.219-1.444-0.013
129A531HOH0-0.052-0.03244.5710.0010.0010.0000.0000.0000.000
130A532HOH00.0370.03716.023-0.010-0.0100.0000.0000.0000.000
131A533HOH00.0280.01324.4650.0030.0030.0000.0000.0000.000
132A535HOH00.0320.03030.3180.0010.0010.0000.0000.0000.000
133A537HOH0-0.073-0.0528.673-0.013-0.0130.0000.0000.0000.000
134A538HOH00.0120.00426.125-0.003-0.0030.0000.0000.0000.000
135A539HOH00.0190.01226.066-0.004-0.0040.0000.0000.0000.000
136A540HOH0-0.010-0.01030.935-0.001-0.0010.0000.0000.0000.000
137A541HOH0-0.029-0.02836.7270.0010.0010.0000.0000.0000.000
138A543HOH00.0380.04416.944-0.003-0.0030.0000.0000.0000.000
139A545HOH0-0.029-0.02036.4480.0020.0020.0000.0000.0000.000
140A546HOH0-0.047-0.03117.986-0.001-0.0010.0000.0000.0000.000
141A548HOH0-0.0100.00443.2310.0000.0000.0000.0000.0000.000
142A551HOH0-0.048-0.02724.8810.0010.0010.0000.0000.0000.000
143A552HOH0-0.024-0.03933.413-0.001-0.0010.0000.0000.0000.000
144A553HOH00.0480.02827.528-0.002-0.0020.0000.0000.0000.000
145A556HOH0-0.026-0.02315.731-0.021-0.0210.0000.0000.0000.000
146A558HOH0-0.023-0.04633.1120.0020.0020.0000.0000.0000.000
147A560HOH0-0.0050.00714.007-0.020-0.0200.0000.0000.0000.000
148A561HOH0-0.060-0.04816.3370.0060.0060.0000.0000.0000.000
149A562HOH0-0.015-0.02615.958-0.009-0.0090.0000.0000.0000.000
150A563HOH0-0.060-0.0388.737-0.013-0.0130.0000.0000.0000.000
151A564HOH0-0.059-0.03630.1760.0000.0000.0000.0000.0000.000
152A565HOH0-0.022-0.03224.0160.0000.0000.0000.0000.0000.000
153A569HOH0-0.078-0.05619.9070.0070.0070.0000.0000.0000.000
154A572HOH0-0.026-0.02239.4040.0010.0010.0000.0000.0000.000
155A573HOH00.0090.02622.3880.0060.0060.0000.0000.0000.000
156A574HOH0-0.006-0.01121.572-0.005-0.0050.0000.0000.0000.000
157A575HOH00.0150.01329.723-0.004-0.0040.0000.0000.0000.000
158A582HOH0-0.028-0.01814.1950.0150.0150.0000.0000.0000.000
159A584HOH0-0.049-0.03429.8590.0000.0000.0000.0000.0000.000
160A585HOH00.0420.03219.8000.0000.0000.0000.0000.0000.000
161A586HOH0-0.085-0.07730.2370.0000.0000.0000.0000.0000.000
162A588HOH0-0.017-0.01213.0030.0170.0170.0000.0000.0000.000
163A590HOH0-0.040-0.03435.9500.0020.0020.0000.0000.0000.000
164A591HOH0-0.029-0.03823.6130.0000.0000.0000.0000.0000.000
165A593HOH0-0.0140.00316.9980.0120.0120.0000.0000.0000.000
166A595HOH00.002-0.0119.560-0.044-0.0440.0000.0000.0000.000
167A600HOH0-0.040-0.03323.1650.0050.0050.0000.0000.0000.000
168A601HOH0-0.046-0.03721.5910.0040.0040.0000.0000.0000.000
169A603HOH00.0080.00913.616-0.009-0.0090.0000.0000.0000.000
170A604HOH0-0.029-0.01645.6600.0010.0010.0000.0000.0000.000
171A605HOH00.002-0.00524.0290.0050.0050.0000.0000.0000.000
172A607HOH0-0.040-0.02117.6910.0060.0060.0000.0000.0000.000
173A609HOH00.0550.04821.745-0.006-0.0060.0000.0000.0000.000
174A612HOH00.0320.02225.9630.0000.0000.0000.0000.0000.000
175A613HOH00.002-0.0209.0550.0080.0080.0000.0000.0000.000
176A617HOH0-0.051-0.04827.1850.0030.0030.0000.0000.0000.000
177A619HOH0-0.036-0.01739.4440.0010.0010.0000.0000.0000.000
178A623HOH0-0.011-0.02537.7730.0010.0010.0000.0000.0000.000
179B502HOH00.0380.02218.564-0.008-0.0080.0000.0000.0000.000
180B508HOH00.0490.03810.439-0.033-0.0330.0000.0000.0000.000
181B514HOH0-0.018-0.01326.6870.0030.0030.0000.0000.0000.000
182B519HOH00.0100.01314.541-0.032-0.0320.0000.0000.0000.000
183B525HOH0-0.065-0.04825.2880.0040.0040.0000.0000.0000.000
184B530HOH0-0.011-0.00422.4690.0020.0020.0000.0000.0000.000
185B552HOH00.0070.00725.654-0.001-0.0010.0000.0000.0000.000
186B553HOH0-0.024-0.0159.358-0.120-0.1200.0000.0000.0000.000
187B562HOH0-0.014-0.00627.9110.0010.0010.0000.0000.0000.000
188B589HOH0-0.027-0.02133.5800.0020.0020.0000.0000.0000.000