FMODB ID: X191Z
Calculation Name: 1L2Y-A-MD49-92300ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandResidueName | |
LigandFragmentNumber | 0 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -24843.392116 |
---|---|
FMO2-HF: Nuclear repulsion | 20241.260214 |
FMO2-HF: Total energy | -4602.131903 |
FMO2-MP2: Total energy | -4615.61445 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-53.88 | -52.109 | 13.906 | -6.039 | -9.638 | -0.085 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.099 | 0.071 | 3.121 | 1.302 | 1.777 | 0.355 | 1.240 | -2.071 | 0.002 | |
4 | 4 | GLN | 0 | -0.083 | -0.057 | 3.416 | 7.241 | 8.041 | 0.021 | -0.214 | -0.606 | 0.000 | |
5 | 5 | GLN | 0 | -0.042 | -0.020 | 2.193 | 5.261 | 5.862 | 2.757 | -0.850 | -2.508 | 0.004 | |
6 | 6 | GLN | 0 | -0.026 | 0.002 | 3.868 | 5.607 | 6.091 | 0.000 | -0.045 | -0.439 | 0.000 | |
7 | 7 | GLN | 0 | -0.013 | 0.000 | 6.403 | 4.234 | 4.234 | 0.000 | 0.000 | 0.000 | 0.000 | |
8 | 8 | GLN | 0 | -0.056 | -0.023 | 7.725 | -0.887 | -0.887 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | 0.069 | 0.010 | 1.801 | -44.841 | -45.430 | 10.773 | -6.170 | -4.014 | -0.091 | |
10 | 10 | GLN | -1 | -0.905 | -0.919 | 5.880 | -31.797 | -31.797 | 0.000 | 0.000 | 0.000 | 0.000 |