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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: X1MZX

Calculation Name: 3OMP-A-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-(trifluoroacetyl)-1,2,3,4-tetrahydroisoquinolin-7-ol

ligand 3-letter code: W14

PDB ID: 3OMP

Chain ID: A

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3056013.482666
FMO2-HF: Nuclear repulsion 2959538.00153
FMO2-HF: Total energy -96475.481137
FMO2-MP2: Total energy -96745.705219


3D Structure
Snapshot
 
Ligand structure

W14

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-66.526-41.29841.400-20.604-46.0250.012


Interactive mode: IFIE and PIEDA for fragment #235(C:1:W14)


Summations of interaction energy for fragment #235(C:1:W14)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-66.526-41.29841.4-20.604-46.025-0.012
Interaction energy analysis for fragmet #235(C:1:W14)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.011 / q_NPA : -0.034
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1C264SER10.7580.85726.3010.4400.4400.0000.0000.0000.000
2C265PRO00.0620.02125.452-0.028-0.0280.0000.0000.0000.000
3C266GLU-1-0.740-0.86324.242-0.587-0.5870.0000.0000.0000.000
4C267GLN00.0590.04724.733-0.040-0.0400.0000.0000.0000.000
5C268LEU00.0350.03921.362-0.017-0.0170.0000.0000.0000.000
6C269VAL00.005-0.00719.883-0.059-0.0590.0000.0000.0000.000
7C270LEU0-0.027-0.00619.810-0.073-0.0730.0000.0000.0000.000
8C271THR00.021-0.00920.566-0.034-0.0340.0000.0000.0000.000
9C272LEU0-0.011-0.01216.267-0.040-0.0400.0000.0000.0000.000
10C273LEU0-0.053-0.02215.875-0.133-0.1330.0000.0000.0000.000
11C274GLU-1-0.922-0.96716.549-0.692-0.6920.0000.0000.0000.000
12C275ALA00.0210.01615.670-0.004-0.0040.0000.0000.0000.000
13C276GLU-1-0.770-0.83810.481-2.464-2.4640.0000.0000.0000.000
14C277PRO00.0010.0148.4210.2320.2320.0000.0000.0000.000
15C278PRO0-0.019-0.01510.411-0.087-0.0870.0000.0000.0000.000
16C279HIS0-0.023-0.0106.422-0.783-0.7830.0000.0000.0000.000
17C280VAL0-0.004-0.0025.1450.8220.8220.0000.0000.0000.000
18C281LEU0-0.019-0.0146.252-0.051-0.0510.0000.0000.0000.000
19C282ILE0-0.025-0.0176.8170.1480.1480.0000.0000.0000.000
20C283SER0-0.049-0.0269.328-0.129-0.1290.0000.0000.0000.000
21C284ARG10.7880.87010.997-0.063-0.0630.0000.0000.0000.000
22C285PRO0-0.0070.00112.276-0.072-0.0720.0000.0000.0000.000
23C286SER0-0.015-0.00215.210-0.060-0.0600.0000.0000.0000.000
24C287ALA0-0.032-0.02517.748-0.022-0.0220.0000.0000.0000.000
25C288PRO00.007-0.00216.8780.0170.0170.0000.0000.0000.000
26C289PHE00.0180.01510.0500.0550.0550.0000.0000.0000.000
27C290THR00.0220.00713.252-0.024-0.0240.0000.0000.0000.000
28C291GLU-1-0.743-0.8619.5591.9631.9630.0000.0000.0000.000
29C292ALA00.0620.0249.4840.4070.4070.0000.0000.0000.000
30C293SER0-0.009-0.01110.1860.1840.1840.0000.0000.0000.000
31C294MET00.0040.0237.0920.0140.0140.0000.0000.0000.000
32C295MET00.0590.0292.810-2.542-0.8570.452-0.816-1.3210.009
33C296MET0-0.0210.0185.7950.8000.8000.0000.0000.0000.000
34C297SER0-0.021-0.0277.348-0.251-0.2510.0000.0000.0000.000
35C298LEU0-0.001-0.0012.193-2.324-0.6291.996-0.854-2.8370.000
36C299THR0-0.009-0.0322.498-5.947-3.1691.112-1.427-2.463-0.021
37C300LYS10.7590.8634.730-1.533-1.491-0.001-0.006-0.0350.000
38C301LEU00.0000.0052.632-2.328-0.6900.944-0.724-1.8570.008
39C302ALA00.0210.0122.256-3.251-0.9492.992-1.658-3.6360.007
40C303ASP-1-0.720-0.8593.583-1.579-1.5980.0920.360-0.4320.002
41C304LYS10.8020.9036.578-0.256-0.2560.0000.0000.0000.000
42C305GLU-1-0.747-0.8451.649-33.718-39.36215.672-6.156-3.872-0.064
43C306LEU0-0.003-0.0025.4280.1520.1520.0000.0000.0000.000
44C307VAL0-0.030-0.0207.7980.1510.1510.0000.0000.0000.000
45C308HIS0-0.010-0.0108.3620.2270.2270.0000.0000.0000.000
46C309MET0-0.0390.0016.9650.2130.2130.0000.0000.0000.000
47C310ILE00.0280.01110.3400.1590.1590.0000.0000.0000.000
48C311SER0-0.011-0.02013.4900.1120.1120.0000.0000.0000.000
49C312TRP0-0.051-0.01211.734-0.005-0.0050.0000.0000.0000.000
50C313ALA00.0530.01813.7840.0850.0850.0000.0000.0000.000
51C314LYS10.8800.92915.8000.4860.4860.0000.0000.0000.000
52C315LYS10.8180.92715.0621.1111.1110.0000.0000.0000.000
53C316ILE0-0.041-0.00615.8710.0370.0370.0000.0000.0000.000
54C317PRO00.004-0.00720.3650.0420.0420.0000.0000.0000.000
55C318GLY00.000-0.01223.366-0.025-0.0250.0000.0000.0000.000
56C319PHE00.009-0.01217.5410.0050.0050.0000.0000.0000.000
57C320VAL00.0030.00421.9420.0330.0330.0000.0000.0000.000
58C321GLU-1-0.866-0.92223.590-0.335-0.3350.0000.0000.0000.000
59C322LEU0-0.055-0.01221.6300.0290.0290.0000.0000.0000.000
60C323SER0-0.001-0.02825.4650.0120.0120.0000.0000.0000.000
61C324LEU0-0.009-0.01323.586-0.024-0.0240.0000.0000.0000.000
62C325PHE00.0650.02922.936-0.009-0.0090.0000.0000.0000.000
63C326ASP-1-0.751-0.82121.289-0.190-0.1900.0000.0000.0000.000
64C327GLN0-0.091-0.04919.878-0.079-0.0790.0000.0000.0000.000
65C328VAL00.0060.01117.197-0.073-0.0730.0000.0000.0000.000
66C329ARG10.9290.95516.551-0.005-0.0050.0000.0000.0000.000
67C330LEU0-0.033-0.02716.9200.0170.0170.0000.0000.0000.000
68C331LEU00.0220.01212.124-0.089-0.0890.0000.0000.0000.000
69C332GLU-1-0.898-0.96412.123-0.017-0.0170.0000.0000.0000.000
70C333SER0-0.055-0.02512.6250.0870.0870.0000.0000.0000.000
71C334CYS0-0.027-0.00210.865-0.045-0.0450.0000.0000.0000.000
72C335TRP00.0710.0245.227-0.406-0.4060.0000.0000.0000.000
73C336MET00.0170.0242.945-3.925-2.0091.830-0.957-2.789-0.002
74C337GLU-1-0.798-0.8954.462-2.082-1.904-0.001-0.015-0.1620.000
75C338VAL0-0.020-0.0126.413-0.598-0.5980.0000.0000.0000.000
76C339LEU0-0.0230.0002.665-3.637-1.6063.205-1.313-3.9230.012
77C340MET0-0.036-0.0042.273-7.370-4.1664.044-1.804-5.445-0.011
78C341MET00.0020.0023.3570.9180.9120.0100.210-0.2140.000
79C342GLY0-0.0090.0015.0520.6640.6640.0000.0000.0000.000
80C343LEU00.0070.0132.561-2.366-0.1872.417-1.086-3.5100.007
81C344MET0-0.0110.0034.5311.2541.3780.000-0.026-0.0990.000
82C345TRP0-0.021-0.0097.3340.6420.6420.0000.0000.0000.000
83C346ARG10.7290.8152.6558.3519.5940.102-0.552-0.7930.000
84C347SER00.013-0.0057.6530.4720.4720.0000.0000.0000.000
85C348ILE0-0.0010.01410.2720.2500.2500.0000.0000.0000.000
86C349ASP-1-0.879-0.94512.983-0.767-0.7670.0000.0000.0000.000
87C350HIS0-0.039-0.01312.9570.1980.1980.0000.0000.0000.000
88C351PRO0-0.023-0.01214.375-0.021-0.0210.0000.0000.0000.000
89C352GLY0-0.003-0.00113.8680.0240.0240.0000.0000.0000.000
90C353LYS10.8320.89611.4930.2700.2700.0000.0000.0000.000
91C354LEU0-0.0200.0045.427-0.178-0.1780.0000.0000.0000.000
92C355ILE00.0040.0048.3490.3450.3450.0000.0000.0000.000
93C356PHE00.0260.0032.025-5.332-2.3243.822-1.386-5.4430.010
94C357ALA00.0550.0324.620-1.674-1.499-0.001-0.015-0.1590.000
95C358PRO0-0.018-0.0207.2070.2330.2330.0000.0000.0000.000
96C359ASP-1-0.829-0.91810.7370.1010.1010.0000.0000.0000.000
97C360LEU0-0.0060.0034.8780.2160.2160.0000.0000.0000.000
98C361VAL0-0.0010.0108.250-0.063-0.0630.0000.0000.0000.000
99C362LEU0-0.0180.0036.4280.1430.1430.0000.0000.0000.000
100C363ASP-1-0.797-0.8929.981-0.255-0.2550.0000.0000.0000.000
101C364ARG10.8170.87410.4780.0010.0010.0000.0000.0000.000
102C365ASP-1-0.842-0.90810.9430.3680.3680.0000.0000.0000.000
103C366GLU-1-0.731-0.83110.7930.4460.4460.0000.0000.0000.000
104C367GLY00.0300.0118.3530.1890.1890.0000.0000.0000.000
105C368LYS10.8260.8979.132-0.353-0.3530.0000.0000.0000.000
106C369CYS0-0.065-0.02211.444-0.041-0.0410.0000.0000.0000.000
107C370VAL00.0060.0076.2070.1040.1040.0000.0000.0000.000
108C371GLU-1-0.796-0.8819.4891.3611.3610.0000.0000.0000.000
109C372GLY00.015-0.0028.4910.3210.3210.0000.0000.0000.000
110C373ILE0-0.0070.0192.503-1.617-0.4350.826-0.752-1.2570.010
111C374LEU0-0.001-0.0026.102-0.234-0.2340.0000.0000.0000.000
112C375GLU-1-0.817-0.8918.3640.6610.6610.0000.0000.0000.000
113C376ILE00.0220.0072.993-1.674-0.3590.135-0.515-0.9350.003
114C377PHE0-0.009-0.0114.234-0.988-0.713-0.001-0.015-0.2590.000
115C378ASP-1-0.785-0.8867.422-0.185-0.1850.0000.0000.0000.000
116C379MET0-0.045-0.0148.070-0.208-0.2080.0000.0000.0000.000
117C380LEU00.0330.0223.379-0.790-0.2410.025-0.106-0.4680.000
118C381LEU00.0280.0277.607-0.101-0.1010.0000.0000.0000.000
119C382ALA0-0.0140.01110.710-0.001-0.0010.0000.0000.0000.000
120C383THR0-0.024-0.0299.4880.0540.0540.0000.0000.0000.000
121C384THR0-0.016-0.0299.192-0.115-0.1150.0000.0000.0000.000
122C385SER0-0.062-0.04311.5620.0840.0840.0000.0000.0000.000
123C386ARG10.8080.87614.4490.5140.5140.0000.0000.0000.000
124C387PHE00.0540.00510.1770.0660.0660.0000.0000.0000.000
125C388ARG10.8470.92714.0770.7750.7750.0000.0000.0000.000
126C389GLU-1-0.828-0.88617.257-0.365-0.3650.0000.0000.0000.000
127C390LEU0-0.019-0.00417.6440.0470.0470.0000.0000.0000.000
128C391LYS10.8400.92418.6270.5340.5340.0000.0000.0000.000
129C392LEU00.0020.02313.2520.0400.0400.0000.0000.0000.000
130C393GLN0-0.013-0.01917.087-0.026-0.0260.0000.0000.0000.000
131C394HIS00.0400.02213.5970.0260.0260.0000.0000.0000.000
132C395LYS10.9010.92015.9990.5780.5780.0000.0000.0000.000
133C396GLU-1-0.739-0.82317.663-0.653-0.6530.0000.0000.0000.000
134C397TYR0-0.007-0.0278.881-0.129-0.1290.0000.0000.0000.000
135C398LEU0-0.0100.00813.447-0.089-0.0890.0000.0000.0000.000
136C399CYS0-0.052-0.01914.9510.0230.0230.0000.0000.0000.000
137C400VAL00.0370.00312.7910.0310.0310.0000.0000.0000.000
138C401LYS10.8210.8978.1962.8092.8090.0000.0000.0000.000
139C402ALA00.0210.01612.1810.0220.0220.0000.0000.0000.000
140C403MET0-0.038-0.03315.3480.0920.0920.0000.0000.0000.000
141C404ILE0-0.025-0.0119.8380.0770.0770.0000.0000.0000.000
142C405LEU0-0.018-0.00113.4210.0860.0860.0000.0000.0000.000
143C406LEU0-0.003-0.00814.4650.1290.1290.0000.0000.0000.000
144C407ASN0-0.058-0.02917.1540.0810.0810.0000.0000.0000.000
145C408SER00.0170.01017.0640.0450.0450.0000.0000.0000.000
146C409SER00.0160.00518.2460.0260.0260.0000.0000.0000.000
147C410MET0-0.0240.01119.5750.0370.0370.0000.0000.0000.000
148C411TYR00.0050.01520.9280.0410.0410.0000.0000.0000.000
149C412PRO0-0.010-0.01624.708-0.013-0.0130.0000.0000.0000.000
150C413LEU00.0360.02823.5380.0210.0210.0000.0000.0000.000
151C414VAL00.019-0.00127.685-0.010-0.0100.0000.0000.0000.000
152C415THR0-0.0080.00226.8660.0090.0090.0000.0000.0000.000
153C416ALA0-0.032-0.02630.037-0.009-0.0090.0000.0000.0000.000
154C417THR0-0.040-0.01628.268-0.015-0.0150.0000.0000.0000.000
155C418GLN0-0.039-0.01731.5070.0120.0120.0000.0000.0000.000
156C419ASP-1-0.777-0.87830.464-0.107-0.1070.0000.0000.0000.000
157C420ALA0-0.014-0.02729.903-0.019-0.0190.0000.0000.0000.000
158C421ASP-1-0.872-0.92530.896-0.215-0.2150.0000.0000.0000.000
159C422SER00.005-0.01025.692-0.036-0.0360.0000.0000.0000.000
160C423SER00.0390.00825.870-0.028-0.0280.0000.0000.0000.000
161C424ARG10.9060.94726.7320.2050.2050.0000.0000.0000.000
162C425LYS10.8140.89727.2140.2220.2220.0000.0000.0000.000
163C426LEU00.0710.05020.394-0.028-0.0280.0000.0000.0000.000
164C427ALA00.0280.01323.344-0.037-0.0370.0000.0000.0000.000
165C428HIS0-0.0030.01125.3450.0020.0020.0000.0000.0000.000
166C429LEU0-0.0050.01020.580-0.013-0.0130.0000.0000.0000.000
167C430LEU00.0220.01819.493-0.037-0.0370.0000.0000.0000.000
168C431ASN0-0.041-0.02322.208-0.011-0.0110.0000.0000.0000.000
169C432ALA0-0.0120.00224.828-0.009-0.0090.0000.0000.0000.000
170C433VAL00.0260.00418.551-0.011-0.0110.0000.0000.0000.000
171C434THR00.011-0.00421.910-0.029-0.0290.0000.0000.0000.000
172C435ASP-1-0.859-0.93623.424-0.377-0.3770.0000.0000.0000.000
173C436ALA0-0.056-0.02422.2260.0110.0110.0000.0000.0000.000
174C437LEU00.0410.02118.842-0.004-0.0040.0000.0000.0000.000
175C438VAL00.0260.00921.9600.0110.0110.0000.0000.0000.000
176C439TRP00.002-0.00125.4300.0080.0080.0000.0000.0000.000
177C440VAL0-0.039-0.03421.1630.0170.0170.0000.0000.0000.000
178C441ILE00.0000.01521.8480.0110.0110.0000.0000.0000.000
179C442ALA0-0.0100.00724.7700.0230.0230.0000.0000.0000.000
180C443LYS10.8230.92325.1940.5200.5200.0000.0000.0000.000
181C444SER0-0.052-0.03025.9470.0140.0140.0000.0000.0000.000
182C445GLY0-0.0040.00127.9550.0170.0170.0000.0000.0000.000
183C446ILE0-0.0270.00027.2770.0260.0260.0000.0000.0000.000
184C447SER00.0530.02131.481-0.006-0.0060.0000.0000.0000.000
185C448SER00.0640.02331.820-0.016-0.0160.0000.0000.0000.000
186C449GLN00.0200.02131.034-0.001-0.0010.0000.0000.0000.000
187C450GLN00.0380.00929.494-0.003-0.0030.0000.0000.0000.000
188C451GLN0-0.017-0.01527.324-0.032-0.0320.0000.0000.0000.000
189C452SER00.013-0.00326.310-0.028-0.0280.0000.0000.0000.000
190C453MET0-0.0030.00726.128-0.018-0.0180.0000.0000.0000.000
191C454ARG10.7590.83920.4640.5670.5670.0000.0000.0000.000
192C455LEU00.0350.01221.810-0.046-0.0460.0000.0000.0000.000
193C456ALA00.0240.01021.626-0.030-0.0300.0000.0000.0000.000
194C457ASN0-0.043-0.02720.439-0.013-0.0130.0000.0000.0000.000
195C458LEU00.0180.00516.506-0.043-0.0430.0000.0000.0000.000
196C459LEU0-0.009-0.00316.890-0.064-0.0640.0000.0000.0000.000
197C460MET0-0.026-0.01318.2170.0130.0130.0000.0000.0000.000
198C461LEU00.0180.01113.4450.0170.0170.0000.0000.0000.000
199C462LEU00.0010.01513.390-0.119-0.1190.0000.0000.0000.000
200C463SER0-0.020-0.01713.268-0.009-0.0090.0000.0000.0000.000
201C464HIS0-0.0120.00012.0930.0290.0290.0000.0000.0000.000
202C465VAL0-0.0050.0027.682-0.057-0.0570.0000.0000.0000.000
203C466ARG10.8280.8998.5850.3510.3510.0000.0000.0000.000
204C467HIS0-0.034-0.01610.1220.1640.1640.0000.0000.0000.000
205C468ALA00.0340.0086.3950.2280.2280.0000.0000.0000.000
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