FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: X1ZZP

Calculation Name: 1ZZL-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 6-[4-(4-fluorophenyl)-1,3-oxazol-5-yl]-3-isopropyl[1,2,4]triazolo[4,3-a]pyridine

ligand 3-letter code: TZY

PDB ID: 1ZZL

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName TZY
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5757583.032844
FMO2-HF: Nuclear repulsion 5617546.306758
FMO2-HF: Total energy -140036.726087
FMO2-MP2: Total energy -140445.939181


3D Structure
Snapshot
 
Ligand structure

TZY

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-107.939-71.88658.112-27.648-66.518-0.058


Interactive mode: IFIE and PIEDA for fragment #347(A:999:TZY)


Summations of interaction energy for fragment #347(A:999:TZY)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-107.939-71.88658.112-27.648-66.5180.058
Interaction energy analysis for fragmet #347(A:999:TZY)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.057 / q_NPA : 0.059
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8330.90114.952-0.253-0.2530.0000.0000.0000.000
2A7THR00.0870.06218.243-0.022-0.0220.0000.0000.0000.000
3A8PHE00.0190.00913.3040.0300.0300.0000.0000.0000.000
4A9TYR0-0.021-0.03314.234-0.030-0.0300.0000.0000.0000.000
5A10ARG10.9110.95416.067-0.085-0.0850.0000.0000.0000.000
6A11GLN00.0400.01714.472-0.010-0.0100.0000.0000.0000.000
7A12GLU-1-0.915-0.95816.159-0.084-0.0840.0000.0000.0000.000
8A13LEU00.0210.00811.759-0.004-0.0040.0000.0000.0000.000
9A14ASN0-0.021-0.02912.8690.0010.0010.0000.0000.0000.000
10A15LYS10.9450.97514.9670.2090.2090.0000.0000.0000.000
11A16THR0-0.0100.01513.6120.0190.0190.0000.0000.0000.000
12A17ILE00.0170.00715.6780.0120.0120.0000.0000.0000.000
13A18TRP0-0.007-0.0066.7990.0740.0740.0000.0000.0000.000
14A19GLU-1-0.885-0.96013.3300.1390.1390.0000.0000.0000.000
15A20VAL0-0.0070.0009.9450.0110.0110.0000.0000.0000.000
16A21PRO0-0.029-0.01111.387-0.004-0.0040.0000.0000.0000.000
17A22GLU-1-0.855-0.95013.7060.2970.2970.0000.0000.0000.000
18A23ARG10.8020.92111.518-0.578-0.5780.0000.0000.0000.000
19A24TYR0-0.037-0.0279.1470.0690.0690.0000.0000.0000.000
20A25GLN00.0160.01412.169-0.098-0.0980.0000.0000.0000.000
21A26ASN0-0.019-0.02512.9580.0400.0400.0000.0000.0000.000
22A27LEU0-0.0030.0159.6320.1150.1150.0000.0000.0000.000
23A28SER00.0210.0129.825-0.086-0.0860.0000.0000.0000.000
24A29PRO0-0.019-0.0138.8410.1050.1050.0000.0000.0000.000
25A30VAL00.0210.0003.739-0.1420.2200.007-0.039-0.3300.000
26A31GLY00.0400.0054.452-0.823-0.717-0.001-0.018-0.0870.000
27A32SER0-0.050-0.0165.097-0.0800.000-0.001-0.001-0.0780.000
28A33GLY0-0.014-0.0118.5090.0860.0860.0000.0000.0000.000
29A34ALA0-0.0040.0066.1030.0620.0620.0000.0000.0000.000
30A35TYR00.0200.0202.426-8.792-4.1167.603-2.789-9.490-0.019
31A36GLY00.0020.0163.017-0.3771.0650.445-0.693-1.194-0.006
32A37SER0-0.040-0.0295.756-0.234-0.2340.0000.0000.0000.000
33A38VAL00.0230.0062.980-1.6390.5990.281-0.529-1.9910.002
34A39CYS0-0.051-0.0045.180-0.0740.038-0.001-0.007-0.1040.000
35A40ALA00.0400.0336.134-0.146-0.1460.0000.0000.0000.000
36A41ALA0-0.008-0.0097.663-0.485-0.4850.0000.0000.0000.000
37A42PHE0-0.0080.0009.9140.4280.4280.0000.0000.0000.000
38A43ASP-1-0.701-0.81310.0940.5080.5080.0000.0000.0000.000
39A44THR0-0.050-0.03512.0650.0260.0260.0000.0000.0000.000
40A45LYS10.9020.94314.376-0.448-0.4480.0000.0000.0000.000
41A46THR0-0.007-0.01511.7740.0350.0350.0000.0000.0000.000
42A47GLY0-0.011-0.00414.8000.0150.0150.0000.0000.0000.000
43A48LEU00.0010.0169.5250.1710.1710.0000.0000.0000.000
44A49ARG10.9630.9788.208-3.187-3.1870.0000.0000.0000.000
45A50VAL00.0080.0046.0080.8150.8150.0000.0000.0000.000
46A51ALA0-0.012-0.0123.057-1.3980.6080.718-0.796-1.9270.005
47A52VAL00.006-0.0042.583-5.667-3.6900.900-1.066-1.810-0.016
48A53LYS10.8320.8871.985-28.023-25.96411.191-5.211-8.0380.067
49A54LYS10.8490.9464.164-0.1000.1170.005-0.039-0.1840.000
50A55LEU0-0.013-0.0126.9020.0210.0210.0000.0000.0000.000
51A56SER00.0170.0109.412-0.280-0.2800.0000.0000.0000.000
52A57ARG10.8980.94311.6950.0770.0770.0000.0000.0000.000
53A58PRO00.0720.04612.329-0.051-0.0510.0000.0000.0000.000
54A59PHE00.0550.00113.897-0.042-0.0420.0000.0000.0000.000
55A60GLN0-0.050-0.01516.3570.0010.0010.0000.0000.0000.000
56A61SER00.0430.01118.334-0.013-0.0130.0000.0000.0000.000
57A62ILE00.0900.04718.9680.0170.0170.0000.0000.0000.000
58A63ILE00.0270.01216.5480.0040.0040.0000.0000.0000.000
59A64HIS0-0.073-0.04214.599-0.039-0.0390.0000.0000.0000.000
60A65ALA00.0630.04914.2590.0530.0530.0000.0000.0000.000
61A66LYS10.8880.95914.6890.2810.2810.0000.0000.0000.000
62A67ARG10.8190.90711.7450.4960.4960.0000.0000.0000.000
63A68THR0-0.021-0.01710.2790.0740.0740.0000.0000.0000.000
64A69TYR00.0380.0329.8510.0100.0100.0000.0000.0000.000
65A70ARG10.7610.85610.9210.3940.3940.0000.0000.0000.000
66A71GLU-1-0.762-0.8684.0912.8623.2620.002-0.038-0.3640.000
67A72LEU0-0.032-0.0046.475-0.295-0.2950.0000.0000.0000.000
68A73ARG10.8640.9197.8140.0800.0800.0000.0000.0000.000
69A74LEU0-0.028-0.0247.7330.0000.0000.0000.0000.0000.000
70A75LEU0-0.020-0.0112.530-1.674-0.5870.994-0.361-1.720-0.003
71A76LYS10.7930.8875.8910.1500.1500.0000.0000.0000.000
72A77HIS0-0.054-0.0278.8080.0870.0870.0000.0000.0000.000
73A78MET0-0.073-0.0038.0130.1030.1030.0000.0000.0000.000
74A79LYS10.9590.9669.3840.0050.0050.0000.0000.0000.000
75A80HIS00.0910.04411.2620.0730.0730.0000.0000.0000.000
76A81GLU-1-0.832-0.91410.8870.6150.6150.0000.0000.0000.000
77A82ASN0-0.012-0.00210.1630.1750.1750.0000.0000.0000.000
78A83VAL0-0.037-0.0188.246-0.209-0.2090.0000.0000.0000.000
79A84ILE0-0.041-0.0022.841-2.3620.0030.632-0.639-2.3580.002
80A85GLY00.0850.0345.529-0.315-0.3150.0000.0000.0000.000
81A86LEU0-0.054-0.0102.897-1.289-0.1670.156-0.396-0.8820.003
82A87LEU0-0.033-0.0044.917-0.174-0.072-0.001-0.006-0.0960.000
83A88ASP-1-0.839-0.9405.4370.3370.3370.0000.0000.0000.000
84A89VAL0-0.0140.0035.2110.3270.402-0.001-0.004-0.0700.000
85A90PHE00.0030.0137.316-0.128-0.1280.0000.0000.0000.000
86A91THR0-0.018-0.03810.0440.0250.0250.0000.0000.0000.000
87A92PRO0-0.003-0.01012.864-0.006-0.0060.0000.0000.0000.000
88A93ALA0-0.0560.01216.042-0.015-0.0150.0000.0000.0000.000
89A94ARG10.9320.94417.886-0.116-0.1160.0000.0000.0000.000
90A95SER0-0.0060.00720.626-0.007-0.0070.0000.0000.0000.000
91A96LEU00.0670.02319.7840.0080.0080.0000.0000.0000.000
92A97GLU-1-0.919-0.96221.0470.0440.0440.0000.0000.0000.000
93A98GLU-1-0.903-0.94821.5390.0890.0890.0000.0000.0000.000
94A99PHE0-0.066-0.01513.2690.0150.0150.0000.0000.0000.000
95A100ASN0-0.065-0.04216.789-0.037-0.0370.0000.0000.0000.000
96A101ASP-1-0.923-0.96412.5110.1480.1480.0000.0000.0000.000
97A102VAL00.0290.0077.894-0.029-0.0290.0000.0000.0000.000
98A103TYR00.000-0.0057.0440.1160.1160.0000.0000.0000.000
99A104LEU00.0190.0122.696-2.161-0.0561.051-1.038-2.1180.009
100A105VAL00.0030.0142.919-5.126-2.5320.949-1.361-2.182-0.003
101A106THR0-0.009-0.0212.146-3.666-0.4465.208-2.087-6.3420.005
102A107HIS00.1020.0424.140-0.733-0.1880.003-0.094-0.4540.000
103A108LEU0-0.072-0.0322.433-8.351-3.5902.575-2.465-4.871-0.007
104A109MET00.001-0.0131.852-8.631-16.40517.285-3.945-5.5660.021
105A110GLY00.0310.0122.257-10.127-10.2123.591-0.631-2.8750.014
106A111ALA0-0.013-0.0052.682-6.217-4.8971.806-0.949-2.178-0.009
107A112ASP-1-0.818-0.9042.517-4.608-3.0120.888-0.405-2.078-0.011
108A113LEU00.0620.0313.8410.3380.5030.018-0.009-0.1740.000
109A114ASN00.019-0.0136.7830.5430.5430.0000.0000.0000.000
110A115ASN0-0.142-0.0605.0740.8370.8370.0000.0000.0000.000
111A116ILE00.0180.0057.1090.2150.2150.0000.0000.0000.000
112A117VAL0-0.0050.0009.6580.0900.0900.0000.0000.0000.000
113A118LYS10.9440.98010.4131.2211.2210.0000.0000.0000.000
114A119CYS0-0.118-0.06413.3100.0680.0680.0000.0000.0000.000
115A120GLN00.0060.01616.1690.0750.0750.0000.0000.0000.000
116A121LYS10.9610.98817.2910.0860.0860.0000.0000.0000.000
117A122LEU00.0050.00814.1360.0390.0390.0000.0000.0000.000
118A123THR0-0.010-0.01418.675-0.016-0.0160.0000.0000.0000.000
119A124ASP-1-0.754-0.89420.0710.0300.0300.0000.0000.0000.000
120A125ASP-1-0.818-0.89221.2710.2030.2030.0000.0000.0000.000
121A126HIS0-0.035-0.00715.8430.0800.0800.0000.0000.0000.000
122A127VAL00.004-0.00216.2860.0100.0100.0000.0000.0000.000
123A128GLN0-0.021-0.00417.4650.0100.0100.0000.0000.0000.000
124A129PHE00.0640.04514.692-0.059-0.0590.0000.0000.0000.000
125A130LEU00.0150.00511.0600.0110.0110.0000.0000.0000.000
126A131ILE0-0.029-0.02713.912-0.075-0.0750.0000.0000.0000.000
127A132TYR0-0.009-0.01116.215-0.029-0.0290.0000.0000.0000.000
128A133GLN00.002-0.00712.9190.1230.1230.0000.0000.0000.000
129A134ILE0-0.045-0.01511.707-0.081-0.0810.0000.0000.0000.000
130A135LEU0-0.025-0.02413.982-0.106-0.1060.0000.0000.0000.000
131A136ARG10.8390.92615.516-0.402-0.4020.0000.0000.0000.000
132A137GLY00.013-0.00513.615-0.015-0.0150.0000.0000.0000.000
133A138LEU0-0.025-0.02314.446-0.102-0.1020.0000.0000.0000.000
134A139LYS10.8640.94015.940-0.005-0.0050.0000.0000.0000.000
135A140TYR00.0400.03512.395-0.035-0.0350.0000.0000.0000.000
136A141ILE00.0150.00510.941-0.034-0.0340.0000.0000.0000.000
137A142HIS0-0.112-0.08314.6400.0470.0470.0000.0000.0000.000
138A143SER0-0.059-0.00417.8900.0350.0350.0000.0000.0000.000
139A144ALA0-0.015-0.00915.3010.0310.0310.0000.0000.0000.000
140A145ASP-1-0.938-0.96617.334-0.253-0.2530.0000.0000.0000.000
141A146ILE0-0.041-0.00811.909-0.040-0.0400.0000.0000.0000.000
142A147ILE0-0.020-0.02215.1580.0150.0150.0000.0000.0000.000
143A148HIS0-0.030-0.0179.0970.2250.2250.0000.0000.0000.000
144A149ARG10.8560.90912.4880.6260.6260.0000.0000.0000.000
145A150ASP-1-0.908-0.9669.345-1.938-1.9380.0000.0000.0000.000
146A151LEU00.0350.03110.704-0.296-0.2960.0000.0000.0000.000
147A152LYS10.9470.9619.2522.4502.4500.0000.0000.0000.000
148A153PRO00.0570.0308.992-0.251-0.2510.0000.0000.0000.000
149A154SER00.011-0.0075.6920.2720.2720.0000.0000.0000.000
150A155ASN0-0.104-0.0324.439-2.200-2.077-0.001-0.013-0.1090.000
151A156LEU0-0.013-0.0065.7570.3970.3970.0000.0000.0000.000
152A157ALA0-0.0090.0032.940-2.773-0.8840.424-0.591-1.7220.003
153A158VAL0-0.024-0.0363.6980.1540.4390.0040.018-0.3060.000
154A159ASN00.001-0.0015.6010.9080.9080.0000.0000.0000.000
155A160GLU-1-0.942-0.9887.8013.1053.1050.0000.0000.0000.000
156A161ASP-1-0.910-0.93710.5861.2181.2180.0000.0000.0000.000
157A162CYS0-0.108-0.06711.046-0.333-0.3330.0000.0000.0000.000
158A163GLU-1-0.836-0.89210.4151.5891.5890.0000.0000.0000.000
159A164LEU0-0.032-0.0188.1410.6230.6230.0000.0000.0000.000
160A165LYS10.8740.9315.136-2.085-2.0850.0000.0000.0000.000
161A166ILE0-0.035-0.0086.792-0.212-0.2120.0000.0000.0000.000
162A167LEU00.016-0.0092.436-4.112-0.5941.335-0.928-3.9250.004
163A168ASP-1-0.926-0.9653.596-7.186-5.8210.047-0.518-0.895-0.003
164A169PHE0-0.0120.0096.1280.4350.4350.0000.0000.0000.000
165A170GLY00.0240.0108.4960.0600.0600.0000.0000.0000.000
166A171LEU0-0.049-0.0185.8440.3200.3200.0000.0000.0000.000
167A172ALA0-0.029-0.02310.471-0.007-0.0070.0000.0000.0000.000
168A173ARG10.8170.8516.481-0.347-0.3470.0000.0000.0000.000
169A174HIS00.1220.0889.9190.0420.0420.0000.0000.0000.000
170A175THR0-0.095-0.04610.9450.1080.1080.0000.0000.0000.000
171A176ASP-1-0.879-0.94012.717-0.783-0.7830.0000.0000.0000.000
172A177ASP-1-0.937-0.94610.216-1.646-1.6460.0000.0000.0000.000
173A178GLU-1-0.910-0.95713.629-0.620-0.6200.0000.0000.0000.000
174A179MET00.0360.02615.742-0.101-0.1010.0000.0000.0000.000
175A180THR0-0.006-0.00517.7670.0750.0750.0000.0000.0000.000
176A181GLY00.0320.02120.499-0.030-0.0300.0000.0000.0000.000
177A182TYR0-0.0030.00320.555-0.027-0.0270.0000.0000.0000.000
178A183VAL0-0.0110.00716.537-0.035-0.0350.0000.0000.0000.000
179A184ALA00.0700.00813.4440.0140.0140.0000.0000.0000.000
180A185THR0-0.066-0.05211.847-0.037-0.0370.0000.0000.0000.000
181A186ARG10.8400.89313.9910.6640.6640.0000.0000.0000.000
182A187TRP0-0.0540.00116.0660.0410.0410.0000.0000.0000.000
183A188TYR0-0.044-0.06313.8350.0100.0100.0000.0000.0000.000
184A189ARG10.9110.98814.1550.9880.9880.0000.0000.0000.000
185A190ALA00.0360.02518.4950.0530.0530.0000.0000.0000.000
186A191PRO00.0360.00321.634-0.019-0.0190.0000.0000.0000.000
187A192GLU-1-0.750-0.87523.625-0.399-0.3990.0000.0000.0000.000
188A193ILE0-0.0010.00317.6350.0090.0090.0000.0000.0000.000
189A194MET0-0.080-0.01320.921-0.023-0.0230.0000.0000.0000.000
190A195LEU0-0.013-0.02421.8680.0040.0040.0000.0000.0000.000
191A196ASN0-0.064-0.02522.7600.0170.0170.0000.0000.0000.000
192A197TRP00.0130.00725.2620.0290.0290.0000.0000.0000.000
193A198MET0-0.028-0.03026.6500.0310.0310.0000.0000.0000.000
194A199HIS00.0160.02625.614-0.041-0.0410.0000.0000.0000.000
195A200TYR00.0440.02619.016-0.005-0.0050.0000.0000.0000.000
196A201ASN00.0670.03121.637-0.016-0.0160.0000.0000.0000.000
197A202GLN00.1080.05719.287-0.043-0.0430.0000.0000.0000.000
198A203THR0-0.008-0.03119.924-0.030-0.0300.0000.0000.0000.000
199A204VAL0-0.030-0.02017.860-0.001-0.0010.0000.0000.0000.000
200A205ASP-1-0.696-0.83516.107-0.781-0.7810.0000.0000.0000.000
201A206ILE0-0.0120.00617.977-0.010-0.0100.0000.0000.0000.000
202A207TRP0-0.0050.00120.0600.0530.0530.0000.0000.0000.000
203A208SER00.000-0.02115.4300.0130.0130.0000.0000.0000.000
204A209VAL00.0060.01315.962-0.016-0.0160.0000.0000.0000.000
205A210GLY00.0420.00317.3890.0420.0420.0000.0000.0000.000
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