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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: X6G7Z

Calculation Name: 1QW2-A-Xray31

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1QW2

Chain ID: A

ChEMBL ID:

UniProt ID: Q9HIX0

Base Structure: X-ray

Registration Date: 2018-09-06

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 150
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -825753.72939
FMO2-HF: Nuclear repulsion 782071.558882
FMO2-HF: Total energy -43682.170508
FMO2-MP2: Total energy -43804.338622


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:14:ASN)


Summations of interaction energy for fragment #1(A:14:ASN)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.0281.764-0.027-0.924-0.8410.001
Interaction energy analysis for fragmet #1(A:14:ASN)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.006 / q_NPA : -0.019
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A16PHE00.0230.0103.8010.1541.946-0.027-0.924-0.8410.001
4A17GLN0-0.0050.0016.507-0.006-0.0060.0000.0000.0000.000
5A18GLY0-0.0010.0059.4900.0630.0630.0000.0000.0000.000
6A19HIS00.004-0.00412.5220.0550.0550.0000.0000.0000.000
7A20MET0-0.093-0.01014.365-0.050-0.0500.0000.0000.0000.000
8A21MET0-0.005-0.02615.9870.0370.0370.0000.0000.0000.000
9A22GLN0-0.025-0.02018.342-0.010-0.0100.0000.0000.0000.000
10A23ILE00.007-0.00420.7890.0230.0230.0000.0000.0000.000
11A24ASP-1-0.888-0.91123.410-0.255-0.2550.0000.0000.0000.000
12A25SER0-0.0090.00025.9400.0160.0160.0000.0000.0000.000
13A26ILE0-0.012-0.00828.902-0.002-0.0020.0000.0000.0000.000
14A27GLU-1-0.908-0.96331.247-0.108-0.1080.0000.0000.0000.000
15A28ILE0-0.036-0.02633.8010.0000.0000.0000.0000.0000.000
16A29GLY0-0.0030.00137.0080.0030.0030.0000.0000.0000.000
17A30GLY0-0.004-0.00139.4390.0040.0040.0000.0000.0000.000
18A31LYS10.8750.96239.4170.0830.0830.0000.0000.0000.000
19A32VAL00.0430.02233.961-0.004-0.0040.0000.0000.0000.000
20A33TYR0-0.0050.00633.5210.0060.0060.0000.0000.0000.000
21A34GLN00.0210.01529.858-0.017-0.0170.0000.0000.0000.000
22A35PHE00.002-0.00224.1110.0110.0110.0000.0000.0000.000
23A36PHE00.0180.00523.855-0.014-0.0140.0000.0000.0000.000
24A37LYS10.9280.95620.0160.2250.2250.0000.0000.0000.000
25A38SER0-0.026-0.02320.381-0.026-0.0260.0000.0000.0000.000
26A39ASP-1-0.811-0.87316.018-0.256-0.2560.0000.0000.0000.000
27A40LEU0-0.018-0.01319.4820.0000.0000.0000.0000.0000.000
28A41GLY00.0610.02921.8010.0010.0010.0000.0000.0000.000
29A42ASN0-0.039-0.01320.730-0.014-0.0140.0000.0000.0000.000
30A43ALA0-0.0140.00222.0940.0050.0050.0000.0000.0000.000
31A44PRO00.0410.02620.869-0.004-0.0040.0000.0000.0000.000
32A45LEU00.0220.01122.5810.0160.0160.0000.0000.0000.000
33A46LEU00.015-0.03124.506-0.014-0.0140.0000.0000.0000.000
34A47PHE0-0.025-0.01926.7750.0120.0120.0000.0000.0000.000
35A48ILE00.0290.01829.490-0.010-0.0100.0000.0000.0000.000
36A49LYS10.8610.94332.1050.1210.1210.0000.0000.0000.000
37A50GLY00.0620.02434.412-0.006-0.0060.0000.0000.0000.000
38A51SER0-0.263-0.19037.3350.0010.0010.0000.0000.0000.000
39A52LYS10.9480.95439.9940.0770.0770.0000.0000.0000.000
40A53GLY00.0560.02640.1930.0040.0040.0000.0000.0000.000
41A54TYR0-0.095-0.06135.072-0.007-0.0070.0000.0000.0000.000
42A55ALA00.0660.03134.4830.0060.0060.0000.0000.0000.000
43A56MET0-0.045-0.02229.795-0.008-0.0080.0000.0000.0000.000
44A57CYS0-0.0210.03727.5180.0060.0060.0000.0000.0000.000
45A58GLY00.0630.01230.6060.0040.0040.0000.0000.0000.000
46A59TYR0-0.010-0.02125.3410.0030.0030.0000.0000.0000.000
47A60LEU0-0.027-0.00130.9830.0000.0000.0000.0000.0000.000
48A61ASN00.0290.01434.0520.0060.0060.0000.0000.0000.000
49A62MET00.013-0.00837.0870.0000.0000.0000.0000.0000.000
50A63GLU-1-0.883-0.93040.012-0.054-0.0540.0000.0000.0000.000
51A64THR0-0.043-0.02138.6680.0020.0020.0000.0000.0000.000
52A65SER00.0230.00238.9020.0000.0000.0000.0000.0000.000
53A66ASN00.007-0.01141.2200.0000.0000.0000.0000.0000.000
54A67LYS10.9440.99443.6010.0640.0640.0000.0000.0000.000
55A68VAL0-0.035-0.01241.4510.0030.0030.0000.0000.0000.000
56A69GLY00.0150.02844.8180.0000.0000.0000.0000.0000.000
57A70ASP-1-0.761-0.85640.259-0.083-0.0830.0000.0000.0000.000
58A71ILE0-0.0100.03142.3420.0030.0030.0000.0000.0000.000
59A72ALA0-0.020-0.02838.659-0.005-0.0050.0000.0000.0000.000
60A73VAL00.0000.01237.1650.0050.0050.0000.0000.0000.000
61A74ARG10.8380.92634.3510.0710.0710.0000.0000.0000.000
62A75VAL00.0050.01232.1520.0040.0040.0000.0000.0000.000
63A76MET0-0.034-0.04831.998-0.003-0.0030.0000.0000.0000.000
64A77GLY0-0.0040.00229.1950.0010.0010.0000.0000.0000.000
65A78VAL0-0.0020.01428.048-0.001-0.0010.0000.0000.0000.000
66A79LYS10.9560.96622.2760.1100.1100.0000.0000.0000.000
67A80THR00.0010.00122.755-0.017-0.0170.0000.0000.0000.000
68A81LEU00.0950.04625.1140.0110.0110.0000.0000.0000.000
69A82ASP-1-0.880-0.93927.425-0.139-0.1390.0000.0000.0000.000
70A83ASP-1-0.874-0.94126.415-0.117-0.1170.0000.0000.0000.000
71A84MET0-0.038-0.01428.9430.0070.0070.0000.0000.0000.000
72A85LEU0-0.001-0.00131.3840.0090.0090.0000.0000.0000.000
73A86SER00.0040.00132.9900.0080.0080.0000.0000.0000.000
74A87ALA0-0.0400.00332.9790.0060.0060.0000.0000.0000.000
75A88LYS10.9280.95434.9620.0650.0650.0000.0000.0000.000
76A89VAL00.0050.00637.573-0.002-0.0020.0000.0000.0000.000
77A90VAL00.0000.01036.7520.0040.0040.0000.0000.0000.000
78A91GLU-1-0.761-0.87239.463-0.061-0.0610.0000.0000.0000.000
79A92ALA00.0310.02040.460-0.004-0.0040.0000.0000.0000.000
80A93SER00.0400.00142.6290.0030.0030.0000.0000.0000.000
81A94GLN00.0540.01444.2510.0000.0000.0000.0000.0000.000
82A95GLU-1-0.730-0.85846.170-0.056-0.0560.0000.0000.0000.000
83A96ALA00.0090.00643.6430.0000.0000.0000.0000.0000.000
84A97GLN0-0.066-0.03045.7130.0030.0030.0000.0000.0000.000
85A98LYS10.8650.97248.3550.0550.0550.0000.0000.0000.000
86A99VAL0-0.0090.02446.5030.0020.0020.0000.0000.0000.000
87A100GLY00.000-0.00949.076-0.001-0.0010.0000.0000.0000.000
88A101ILE0-0.0390.00042.6260.0000.0000.0000.0000.0000.000
89A102ASN00.012-0.01745.6890.0020.0020.0000.0000.0000.000
90A103PRO0-0.012-0.00542.973-0.002-0.0020.0000.0000.0000.000
91A104GLY0-0.011-0.00642.2490.0030.0030.0000.0000.0000.000
92A105ASP-1-0.841-0.90442.770-0.061-0.0610.0000.0000.0000.000
93A106VAL0-0.041-0.02137.986-0.002-0.0020.0000.0000.0000.000
94A107LEU00.0650.03234.2470.0000.0000.0000.0000.0000.000
95A108ARG10.9360.96735.8030.0960.0960.0000.0000.0000.000
96A109ASN0-0.054-0.04438.315-0.003-0.0030.0000.0000.0000.000
97A110VAL00.0000.00341.0270.0030.0030.0000.0000.0000.000
98A111ILE00.0120.01636.2840.0000.0000.0000.0000.0000.000
99A112ASP-1-0.826-0.87939.766-0.076-0.0760.0000.0000.0000.000
100A113LYS10.8510.92342.1840.0630.0630.0000.0000.0000.000
101A114LEU0-0.034-0.00937.7530.0010.0010.0000.0000.0000.000
102A115GLY-1-0.722-0.77940.033-0.089-0.0890.0000.0000.0000.000
103A116HOH0-0.003-0.00545.5440.0000.0000.0000.0000.0000.000
104A117HOH0-0.0020.00235.081-0.001-0.0010.0000.0000.0000.000
105A118HOH00.0280.00844.436-0.001-0.0010.0000.0000.0000.000
106A119HOH0-0.0010.00838.605-0.002-0.0020.0000.0000.0000.000
107A120HOH0-0.030-0.02545.0670.0010.0010.0000.0000.0000.000
108A121HOH0-0.008-0.00747.515-0.001-0.0010.0000.0000.0000.000
109A122HOH00.0040.00442.4230.0000.0000.0000.0000.0000.000
110A123HOH0-0.001-0.00444.9270.0010.0010.0000.0000.0000.000
111A124HOH0-0.025-0.01140.931-0.002-0.0020.0000.0000.0000.000
112A125HOH00.0180.00943.2920.0000.0000.0000.0000.0000.000
113A126HOH00.0360.02845.060-0.001-0.0010.0000.0000.0000.000
114A127HOH00.0390.02335.1570.0000.0000.0000.0000.0000.000
115A128HOH0-0.058-0.04648.7400.0000.0000.0000.0000.0000.000
116A129HOH0-0.031-0.01920.2340.0060.0060.0000.0000.0000.000
117A135HOH00.0130.00018.7800.0000.0000.0000.0000.0000.000
118A136HOH00.0590.03543.813-0.001-0.0010.0000.0000.0000.000
119A137HOH00.0030.00547.4470.0010.0010.0000.0000.0000.000
120A138HOH0-0.022-0.02149.2370.0000.0000.0000.0000.0000.000
121A139HOH0-0.044-0.03541.862-0.001-0.0010.0000.0000.0000.000
122A140HOH0-0.036-0.02742.1740.0000.0000.0000.0000.0000.000
123A141HOH00.0300.01837.965-0.002-0.0020.0000.0000.0000.000
124A142HOH0-0.014-0.01426.1980.0020.0020.0000.0000.0000.000
125A143HOH0-0.033-0.02345.4970.0010.0010.0000.0000.0000.000
126A145HOH0-0.038-0.03925.2610.0070.0070.0000.0000.0000.000
127A146HOH0-0.024-0.01650.4850.0010.0010.0000.0000.0000.000
128A147HOH0-0.013-0.01737.9600.0010.0010.0000.0000.0000.000
129A148HOH0-0.034-0.01647.5390.0000.0000.0000.0000.0000.000
130A149HOH0-0.027-0.01748.1010.0000.0000.0000.0000.0000.000
131A150HOH0-0.025-0.01950.2530.0000.0000.0000.0000.0000.000
132A151HOH0-0.059-0.04613.1950.0010.0010.0000.0000.0000.000
133A152HOH0-0.038-0.02450.6920.0010.0010.0000.0000.0000.000
134A153HOH0-0.027-0.03041.905-0.002-0.0020.0000.0000.0000.000
135A156HOH0-0.044-0.03945.6200.0010.0010.0000.0000.0000.000
136A158HOH00.0050.00025.845-0.004-0.0040.0000.0000.0000.000
137A159HOH0-0.042-0.03753.4630.0000.0000.0000.0000.0000.000
138A161HOH0-0.041-0.03131.4190.0030.0030.0000.0000.0000.000
139A162HOH0-0.033-0.02045.7660.0000.0000.0000.0000.0000.000
140A163HOH0-0.039-0.02947.4520.0000.0000.0000.0000.0000.000
141A165HOH0-0.030-0.03739.9240.0020.0020.0000.0000.0000.000
142A166HOH00.0260.01033.9760.0010.0010.0000.0000.0000.000
143A167HOH0-0.029-0.01628.4560.0030.0030.0000.0000.0000.000
144A171HOH0-0.016-0.00647.2860.0000.0000.0000.0000.0000.000
145A173HOH00.0180.01019.089-0.006-0.0060.0000.0000.0000.000
146A174HOH0-0.059-0.03746.6840.0000.0000.0000.0000.0000.000
147A176HOH0-0.047-0.03551.0340.0010.0010.0000.0000.0000.000
148A178HOH0-0.037-0.02543.0190.0010.0010.0000.0000.0000.000
149A180HOH00.0390.02537.0050.0010.0010.0000.0000.0000.000
150A182HOH0-0.008-0.00544.5400.0010.0010.0000.0000.0000.000