FMODB ID: XM2YZ
Calculation Name: 1L2Y-A-MD50-69500ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -23027.36231 |
---|---|
FMO2-HF: Nuclear repulsion | 18425.198167 |
FMO2-HF: Total energy | -4602.164143 |
FMO2-MP2: Total energy | -4615.604692 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-62.538 | -58.618 | 23.294 | -12.457 | -14.759 | -0.063 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | 0.073 | 0.040 | 2.122 | -19.378 | -12.212 | 5.295 | -5.611 | -6.851 | -0.012 | |
4 | 4 | GLN | 0 | -0.009 | -0.002 | 3.033 | -3.376 | -2.272 | 0.094 | -0.484 | -0.714 | -0.004 | |
5 | 5 | GLN | 0 | -0.039 | -0.003 | 2.717 | 5.204 | 7.267 | 0.499 | -0.947 | -1.615 | -0.004 | |
6 | 6 | GLN | 0 | 0.025 | 0.009 | 3.837 | -5.590 | -5.275 | 0.002 | -0.096 | -0.221 | -0.001 | |
7 | 7 | GLN | 0 | 0.000 | 0.005 | 1.722 | -16.130 | -22.939 | 17.405 | -5.283 | -5.314 | -0.042 | |
8 | 8 | GLN | 0 | -0.010 | -0.017 | 4.609 | 3.851 | 3.932 | -0.001 | -0.036 | -0.044 | 0.000 | |
9 | 9 | GLN | 0 | -0.009 | -0.012 | 8.311 | -1.631 | -1.631 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.877 | -0.900 | 6.459 | -25.488 | -25.488 | 0.000 | 0.000 | 0.000 | 0.000 |