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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XMJZP

Calculation Name: 3OMQ-B-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-[(trifluoromethyl)sulfonyl]-1,2,3,4-tetrahydroisoquinolin-6-ol

ligand 3-letter code: W23

PDB ID: 3OMQ

Chain ID: B

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 233
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3042821.337991
FMO2-HF: Nuclear repulsion 2946571.105758
FMO2-HF: Total energy -96250.232233
FMO2-MP2: Total energy -96518.825058


3D Structure
Snapshot
 
Ligand structure

W23

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-63.828-38.25449.737-23.025-52.282-0.018


Interactive mode: IFIE and PIEDA for fragment #233(D:1:W23)


Summations of interaction energy for fragment #233(D:1:W23)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-63.828-38.25449.737-23.025-52.2820.018
Interaction energy analysis for fragmet #233(D:1:W23)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.018 / q_NPA : -0.029
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1D264SER10.7230.83127.0620.0780.0780.0000.0000.0000.000
2D265PRO00.1240.04825.671-0.009-0.0090.0000.0000.0000.000
3D266GLU-1-0.776-0.88723.555-0.272-0.2720.0000.0000.0000.000
4D267GLN00.0310.02524.467-0.011-0.0110.0000.0000.0000.000
5D268LEU00.0160.03620.045-0.006-0.0060.0000.0000.0000.000
6D269VAL00.006-0.02119.191-0.034-0.0340.0000.0000.0000.000
7D270LEU0-0.0200.00219.728-0.045-0.0450.0000.0000.0000.000
8D271THR00.0420.01020.010-0.051-0.0510.0000.0000.0000.000
9D272LEU0-0.006-0.00715.812-0.037-0.0370.0000.0000.0000.000
10D273LEU0-0.059-0.03015.304-0.078-0.0780.0000.0000.0000.000
11D274GLU-1-0.918-0.96415.950-0.482-0.4820.0000.0000.0000.000
12D275ALA00.0140.00814.831-0.046-0.0460.0000.0000.0000.000
13D276GLU-1-0.773-0.83610.760-1.306-1.3060.0000.0000.0000.000
14D277PRO00.0040.0188.0630.1260.1260.0000.0000.0000.000
15D278PRO0-0.039-0.02310.7680.0440.0440.0000.0000.0000.000
16D279HIS0-0.008-0.0106.982-0.764-0.7640.0000.0000.0000.000
17D280VAL0-0.029-0.0015.5190.5770.5770.0000.0000.0000.000
18D281LEU00.0210.0106.748-0.202-0.2020.0000.0000.0000.000
19D282ILE0-0.046-0.0296.393-0.043-0.0430.0000.0000.0000.000
20D283SER00.0300.0149.104-0.037-0.0370.0000.0000.0000.000
21D284ARG10.7930.85311.0010.8000.8000.0000.0000.0000.000
22D285PRO0-0.020-0.00111.5670.1100.1100.0000.0000.0000.000
23D286SER0-0.007-0.00214.6060.0350.0350.0000.0000.0000.000
24D287ALA0-0.023-0.01816.3170.0820.0820.0000.0000.0000.000
25D288PRO00.0130.01015.351-0.063-0.0630.0000.0000.0000.000
26D289PHE00.0110.02110.063-0.017-0.0170.0000.0000.0000.000
27D290THR0-0.017-0.01810.8730.1170.1170.0000.0000.0000.000
28D291GLU-1-0.757-0.8828.6130.8540.8540.0000.0000.0000.000
29D292ALA00.0530.0308.4110.0220.0220.0000.0000.0000.000
30D293SER0-0.011-0.0179.990-0.086-0.0860.0000.0000.0000.000
31D294MET00.0220.0245.266-0.308-0.3080.0000.0000.0000.000
32D295MET00.0420.0492.699-2.931-0.9360.659-0.981-1.6730.010
33D296MET0-0.0120.0265.840-0.181-0.1810.0000.0000.0000.000
34D297SER0-0.029-0.0417.517-0.362-0.3620.0000.0000.0000.000
35D298LEU00.0010.0062.398-3.412-0.9731.693-1.053-3.0790.005
36D299THR0-0.008-0.0302.558-6.715-4.4620.816-1.142-1.927-0.018
37D300LYS10.8000.9145.0180.4520.552-0.001-0.004-0.0940.000
38D301LEU0-0.042-0.0122.250-1.0030.2392.119-0.740-2.6200.004
39D302ALA00.0450.0042.248-2.063-0.5031.513-0.978-2.0960.002
40D303ASP-1-0.839-0.9153.6920.1160.2580.0410.005-0.1890.000
41D304LYS10.8910.9466.4033.1953.1950.0000.0000.0000.000
42D305GLU-1-0.781-0.8711.602-31.601-39.54618.181-6.595-3.641-0.063
43D306LEU00.0570.0425.5450.7750.7750.0000.0000.0000.000
44D307VAL00.0020.0058.2920.3100.3100.0000.0000.0000.000
45D308HIS0-0.003-0.0177.4850.3800.3800.0000.0000.0000.000
46D309MET0-0.0180.0288.0520.2930.2930.0000.0000.0000.000
47D310ILE00.0050.0039.5220.2440.2440.0000.0000.0000.000
48D311SER0-0.051-0.04412.0320.1500.1500.0000.0000.0000.000
49D312TRP0-0.030-0.00210.6000.0880.0880.0000.0000.0000.000
50D313ALA00.0420.00412.6840.1100.1100.0000.0000.0000.000
51D314LYS10.8620.91914.8170.2260.2260.0000.0000.0000.000
52D315LYS10.8140.92014.4170.8170.8170.0000.0000.0000.000
53D316ILE0-0.0250.00215.1750.0230.0230.0000.0000.0000.000
54D317PRO0-0.001-0.00319.4180.0410.0410.0000.0000.0000.000
55D318GLY0-0.018-0.02122.6680.0060.0060.0000.0000.0000.000
56D319PHE00.001-0.01516.9170.0380.0380.0000.0000.0000.000
57D320VAL0-0.0040.00120.3790.0270.0270.0000.0000.0000.000
58D321GLU-1-0.822-0.90222.254-0.070-0.0700.0000.0000.0000.000
59D322LEU0-0.0450.00121.5240.0250.0250.0000.0000.0000.000
60D323SER0-0.005-0.02025.058-0.022-0.0220.0000.0000.0000.000
61D324LEU0-0.010-0.01822.246-0.003-0.0030.0000.0000.0000.000
62D325PHE00.0340.02022.2560.0030.0030.0000.0000.0000.000
63D326ASP-1-0.749-0.87021.6620.2700.2700.0000.0000.0000.000
64D327GLN0-0.096-0.05519.337-0.012-0.0120.0000.0000.0000.000
65D328VAL00.0270.02017.098-0.055-0.0550.0000.0000.0000.000
66D329ARG10.8190.90716.894-0.437-0.4370.0000.0000.0000.000
67D330LEU0-0.011-0.02416.9640.1040.1040.0000.0000.0000.000
68D331LEU0-0.007-0.00313.1450.0090.0090.0000.0000.0000.000
69D332GLU-1-0.792-0.88812.5300.9850.9850.0000.0000.0000.000
70D333SER0-0.032-0.00613.2870.2110.2110.0000.0000.0000.000
71D334CYS0-0.047-0.01010.832-0.012-0.0120.0000.0000.0000.000
72D335TRP00.0770.0155.1590.2520.454-0.001-0.003-0.1980.000
73D336MET00.0340.0322.655-4.649-2.9454.597-1.290-5.0110.010
74D337GLU-1-0.777-0.8754.2800.1590.3660.000-0.032-0.1740.000
75D338VAL00.000-0.0036.561-0.501-0.5010.0000.0000.0000.000
76D339LEU0-0.0080.0092.828-3.254-0.7561.146-0.912-2.7320.007
77D340MET0-0.035-0.0072.171-1.4740.1134.425-1.541-4.471-0.002
78D341MET0-0.0120.0003.2610.4020.2760.0120.366-0.2520.000
79D342GLY00.0000.0075.021-0.174-0.105-0.001-0.007-0.0610.000
80D343LEU00.0140.0132.395-3.888-1.9943.789-1.308-4.3750.007
81D344MET0-0.0210.0004.386-0.544-0.3120.001-0.053-0.1810.000
82D345TRP0-0.048-0.0207.0640.1310.1310.0000.0000.0000.000
83D346ARG10.7350.8222.2977.2748.4330.493-0.645-1.0070.001
84D347SER00.009-0.0087.352-0.050-0.0500.0000.0000.0000.000
85D348ILE00.0110.0199.9840.0850.0850.0000.0000.0000.000
86D349ASP-1-0.857-0.93912.685-0.585-0.5850.0000.0000.0000.000
87D350HIS0-0.042-0.01012.2910.0790.0790.0000.0000.0000.000
88D351PRO0-0.016-0.01013.9240.0140.0140.0000.0000.0000.000
89D352GLY0-0.0030.00312.6660.0270.0270.0000.0000.0000.000
90D353LYS10.8270.89511.2400.5390.5390.0000.0000.0000.000
91D354LEU0-0.0090.0034.9210.0210.0210.0000.0000.0000.000
92D355ILE00.0200.0098.099-0.079-0.0790.0000.0000.0000.000
93D356PHE00.0240.0012.219-4.698-1.1653.083-1.316-5.3000.008
94D357ALA00.0210.0074.640-1.700-1.566-0.001-0.015-0.1180.000
95D358PRO0-0.030-0.0277.3740.3650.3650.0000.0000.0000.000
96D359ASP-1-0.869-0.90210.768-1.007-1.0070.0000.0000.0000.000
97D360LEU0-0.007-0.0076.2480.1610.1610.0000.0000.0000.000
98D361VAL00.0120.0118.597-0.181-0.1810.0000.0000.0000.000
99D362LEU0-0.024-0.0076.4320.0550.0550.0000.0000.0000.000
100D363ASP-1-0.842-0.92810.099-0.525-0.5250.0000.0000.0000.000
101D364ARG10.7860.8469.8580.0120.0120.0000.0000.0000.000
102D365ASP-1-0.788-0.8899.804-0.045-0.0450.0000.0000.0000.000
103D366GLU-1-0.749-0.83310.219-0.720-0.7200.0000.0000.0000.000
104D367GLY00.0400.0227.4870.0020.0020.0000.0000.0000.000
105D368LYS10.8140.8798.1250.2040.2040.0000.0000.0000.000
106D369CYS0-0.103-0.0209.6730.0590.0590.0000.0000.0000.000
107D370VAL00.001-0.0156.5150.0450.0450.0000.0000.0000.000
108D371GLU-1-0.833-0.8938.7441.1791.1790.0000.0000.0000.000
109D372GLY00.0480.0247.1300.1610.1610.0000.0000.0000.000
110D373ILE0-0.018-0.0252.677-2.719-0.2191.363-1.536-2.3260.015
111D374LEU0-0.010-0.0074.889-0.321-0.230-0.001-0.001-0.0890.000
112D375GLU-1-0.813-0.9007.5661.2181.2180.0000.0000.0000.000
113D376ILE00.0190.0062.605-4.134-1.2571.969-1.470-3.3760.013
114D377PHE0-0.013-0.0132.837-2.283-0.9920.149-0.478-0.9620.005
115D378ASP-1-0.747-0.8346.487-0.135-0.1350.0000.0000.0000.000
116D379MET0-0.0380.0007.7940.0100.0100.0000.0000.0000.000
117D380LEU00.0360.0272.644-1.245-0.2770.396-0.243-1.121-0.002
118D381LEU00.0230.0306.9230.0900.0900.0000.0000.0000.000
119D382ALA0-0.0040.0139.8660.0410.0410.0000.0000.0000.000
120D383THR0-0.019-0.0299.1290.0660.0660.0000.0000.0000.000
121D384THR0-0.015-0.0278.523-0.023-0.0230.0000.0000.0000.000
122D385SER0-0.040-0.02711.0040.0220.0220.0000.0000.0000.000
123D386ARG10.8040.90014.1060.0410.0410.0000.0000.0000.000
124D387PHE00.0500.0029.8930.0350.0350.0000.0000.0000.000
125D388ARG10.8450.92013.8890.4460.4460.0000.0000.0000.000
126D389GLU-1-0.867-0.92016.813-0.053-0.0530.0000.0000.0000.000
127D390LEU0-0.020-0.02217.2730.0190.0190.0000.0000.0000.000
128D391LYS10.8510.93319.2970.1850.1850.0000.0000.0000.000
129D392LEU0-0.0320.01113.3860.0050.0050.0000.0000.0000.000
130D393GLN0-0.011-0.01917.129-0.057-0.0570.0000.0000.0000.000
131D394HIS00.0860.04213.2920.0260.0260.0000.0000.0000.000
132D395LYS10.8410.90616.0780.3090.3090.0000.0000.0000.000
133D396GLU-1-0.765-0.87017.268-0.166-0.1660.0000.0000.0000.000
134D397TYR0-0.021-0.0378.9080.0150.0150.0000.0000.0000.000
135D398LEU00.0030.01312.9840.0200.0200.0000.0000.0000.000
136D399CYS0-0.052-0.01814.8010.0450.0450.0000.0000.0000.000
137D400VAL00.0140.00111.9830.0580.0580.0000.0000.0000.000
138D401LYS10.8600.9258.3701.2161.2160.0000.0000.0000.000
139D402ALA0-0.0020.00512.0320.0580.0580.0000.0000.0000.000
140D403MET0-0.038-0.03315.4120.0530.0530.0000.0000.0000.000
141D404ILE0-0.012-0.0059.1570.0730.0730.0000.0000.0000.000
142D405LEU0-0.0010.00812.8890.1280.1280.0000.0000.0000.000
143D406LEU0-0.011-0.00814.3800.0590.0590.0000.0000.0000.000
144D407ASN0-0.070-0.00612.218-0.028-0.0280.0000.0000.0000.000
145D408SER0-0.019-0.01815.0940.2250.2250.0000.0000.0000.000
146D409SER0-0.009-0.01116.784-0.132-0.1320.0000.0000.0000.000
147D410MET0-0.0110.00419.4030.0440.0440.0000.0000.0000.000
148D411TYR0-0.044-0.04518.630-0.066-0.0660.0000.0000.0000.000
149D412PRO00.005-0.00622.698-0.032-0.0320.0000.0000.0000.000
150D413LEU00.0210.03124.2750.0390.0390.0000.0000.0000.000
151D414VAL0-0.014-0.00826.463-0.014-0.0140.0000.0000.0000.000
152D415THR0-0.037-0.03227.2010.0030.0030.0000.0000.0000.000
153D416ALA0-0.007-0.01029.641-0.007-0.0070.0000.0000.0000.000
154D417THR0-0.026-0.02132.530-0.010-0.0100.0000.0000.0000.000
155D418GLN0-0.0250.00230.2550.0120.0120.0000.0000.0000.000
156D419ASP-1-0.711-0.81527.9090.1820.1820.0000.0000.0000.000
157D420ALA00.0070.01130.0440.0130.0130.0000.0000.0000.000
158D421ASP-1-0.833-0.91530.8140.0630.0630.0000.0000.0000.000
159D422SER0-0.010-0.03726.617-0.020-0.0200.0000.0000.0000.000
160D423SER0-0.023-0.00427.3310.0030.0030.0000.0000.0000.000
161D424ARG10.8700.90528.606-0.066-0.0660.0000.0000.0000.000
162D425LYS10.8100.90726.323-0.043-0.0430.0000.0000.0000.000
163D426LEU00.0780.04321.149-0.023-0.0230.0000.0000.0000.000
164D427ALA00.0150.00624.483-0.003-0.0030.0000.0000.0000.000
165D428HIS00.0120.01126.8150.0010.0010.0000.0000.0000.000
166D429LEU00.0070.02719.590-0.023-0.0230.0000.0000.0000.000
167D430LEU00.0320.01621.713-0.021-0.0210.0000.0000.0000.000
168D431ASN0-0.053-0.01323.532-0.003-0.0030.0000.0000.0000.000
169D432ALA0-0.031-0.01123.936-0.014-0.0140.0000.0000.0000.000
170D433VAL00.0420.00618.748-0.033-0.0330.0000.0000.0000.000
171D434THR0-0.018-0.01121.752-0.004-0.0040.0000.0000.0000.000
172D435ASP-1-0.818-0.91424.241-0.044-0.0440.0000.0000.0000.000
173D436ALA0-0.039-0.01821.603-0.014-0.0140.0000.0000.0000.000
174D437LEU00.0570.01818.998-0.018-0.0180.0000.0000.0000.000
175D438VAL00.0220.01322.100-0.007-0.0070.0000.0000.0000.000
176D439TRP00.0420.02124.877-0.009-0.0090.0000.0000.0000.000
177D440VAL0-0.031-0.01420.665-0.014-0.0140.0000.0000.0000.000
178D441ILE00.0190.00621.445-0.008-0.0080.0000.0000.0000.000
179D442ALA0-0.0090.01024.602-0.003-0.0030.0000.0000.0000.000
180D443LYS10.8240.91926.3300.1600.1600.0000.0000.0000.000
181D444SER0-0.037-0.01723.319-0.013-0.0130.0000.0000.0000.000
182D445GLY00.0190.00324.981-0.003-0.0030.0000.0000.0000.000
183D446ILE0-0.038-0.00524.8770.0050.0050.0000.0000.0000.000
184D447SER00.0480.02628.7230.0030.0030.0000.0000.0000.000
185D448SER00.0650.02630.3040.0060.0060.0000.0000.0000.000
186D449GLN00.0480.02730.0770.0010.0010.0000.0000.0000.000
187D450GLN00.021-0.00427.7600.0110.0110.0000.0000.0000.000
188D451GLN0-0.043-0.01426.0560.0090.0090.0000.0000.0000.000
189D452SER00.0210.00025.4630.0070.0070.0000.0000.0000.000
190D453MET0-0.0120.00824.6170.0230.0230.0000.0000.0000.000
191D454ARG10.8240.90020.2350.1700.1700.0000.0000.0000.000
192D455LEU00.0180.01021.0700.0040.0040.0000.0000.0000.000
193D456ALA00.0240.00921.4520.0240.0240.0000.0000.0000.000
194D457ASN0-0.020-0.02419.1940.0350.0350.0000.0000.0000.000
195D458LEU00.0230.00916.0150.0150.0150.0000.0000.0000.000
196D459LEU0-0.011-0.00516.5950.0350.0350.0000.0000.0000.000
197D460MET0-0.031-0.01417.4580.0650.0650.0000.0000.0000.000
198D461LEU0-0.015-0.00913.2710.0700.0700.0000.0000.0000.000
199D462LEU00.0160.01612.5200.0400.0400.0000.0000.0000.000
200D463SER0-0.0010.00612.8000.1510.1510.0000.0000.0000.000
201D464HIS0-0.009-0.00412.0050.2280.2280.0000.0000.0000.000
202D465VAL00.0080.0067.7740.1440.1440.0000.0000.0000.000
203D466ARG10.8160.8898.376-0.924-0.9240.0000.0000.0000.000
204D467HIS00.0240.0079.9310.5080.5080.0000.0000.0000.000
205D468ALA00.0410.0055.6150.3800.3800.0000.0000.0000.000
206D469SER0-0.040-0.0255.2002.0912.221-0.001-0.002-0.1270.000
207D470ASN0-0.041-0.0196.2811.2761.2760.0000.0000.0000.000
208D471LYS10.7900.8916.514-1.507-1.5070.0000.0000.0000.000
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