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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XN3JQ

Calculation Name: 4IGI-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4IGI

Chain ID: A

ChEMBL ID:

UniProt ID: E9PWQ3

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 199
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2202817.517416
FMO2-HF: Nuclear repulsion 2129296.174835
FMO2-HF: Total energy -73521.342581
FMO2-MP2: Total energy -73740.423904


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1023:ACE)


Summations of interaction energy for fragment #1(A:1023:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.8132.572-0.012-0.344-0.4010
Interaction energy analysis for fragmet #1(A:1023:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.012 / q_NPA : -0.017
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A1025LYS10.8730.9453.8290.9861.739-0.010-0.293-0.4500.000
4A1026ASP-1-0.703-0.8126.798-0.924-0.9240.0000.0000.0000.000
5A1027VAL0-0.010-0.0059.7400.1140.1140.0000.0000.0000.000
6A1028VAL00.001-0.00312.362-0.002-0.0020.0000.0000.0000.000
7A1029PHE00.0190.00915.2190.0300.0300.0000.0000.0000.000
8A1030LEU0-0.002-0.00418.797-0.006-0.0060.0000.0000.0000.000
9A1031ILE0-0.015-0.01921.6040.0130.0130.0000.0000.0000.000
10A1032ASH0-0.051-0.06824.773-0.002-0.0020.0000.0000.0000.000
11A1033GLY00.0380.00028.4460.0010.0010.0000.0000.0000.000
12A1034SER00.008-0.00730.5140.0020.0020.0000.0000.0000.000
13A1035GLU-1-0.774-0.88933.867-0.039-0.0390.0000.0000.0000.000
14A1036GLY0-0.0180.01035.6330.0020.0020.0000.0000.0000.000
15A1037VAL00.0180.01129.4860.0030.0030.0000.0000.0000.000
16A1038ARG10.8190.88632.6120.0410.0410.0000.0000.0000.000
17A1039SER0-0.053-0.03834.343-0.001-0.0010.0000.0000.0000.000
18A1040GLY00.0500.02931.8760.0020.0020.0000.0000.0000.000
19A1041PHE00.0280.01427.546-0.001-0.0010.0000.0000.0000.000
20A1042PRO0-0.018-0.01928.371-0.004-0.0040.0000.0000.0000.000
21A1043LEU00.0210.00727.888-0.001-0.0010.0000.0000.0000.000
22A1044LEU00.0210.02024.3080.0010.0010.0000.0000.0000.000
23A1045LYS10.8170.90423.7790.0600.0600.0000.0000.0000.000
24A1046ASP-1-0.893-0.91423.072-0.030-0.0300.0000.0000.0000.000
25A1047PHE00.0440.01219.825-0.001-0.0010.0000.0000.0000.000
26A1048VAL00.010-0.00118.5570.0000.0000.0000.0000.0000.000
27A1049GLN0-0.021-0.02017.959-0.013-0.0130.0000.0000.0000.000
28A1050ARG10.8710.93217.9410.0030.0030.0000.0000.0000.000
29A1051VAL00.0180.01714.1460.0090.0090.0000.0000.0000.000
30A1052VAL0-0.035-0.03013.661-0.006-0.0060.0000.0000.0000.000
31A1053GLU-1-0.943-0.97813.287-0.058-0.0580.0000.0000.0000.000
32A1054SER0-0.057-0.01212.6970.0260.0260.0000.0000.0000.000
33A1055LEU0-0.089-0.0349.0070.0420.0420.0000.0000.0000.000
34A1056ASP-1-0.847-0.9306.097-0.271-0.2710.0000.0000.0000.000
35A1057VAL0-0.016-0.0157.494-0.302-0.3020.0000.0000.0000.000
36A1058GLY00.000-0.0259.5990.1190.1190.0000.0000.0000.000
37A1059PRO0-0.048-0.0129.160-0.223-0.2230.0000.0000.0000.000
38A1060ASP-1-0.866-0.9317.218-0.918-0.9180.0000.0000.0000.000
39A1061ARG10.8550.9674.6270.0210.017-0.001-0.0400.0460.000
40A1062VAL0-0.0260.0025.668-0.210-0.200-0.001-0.0110.0030.000
41A1063ARG10.8210.9117.4601.0521.0520.0000.0000.0000.000
42A1064VAL00.0280.00410.9610.0400.0400.0000.0000.0000.000
43A1065ALA0-0.034-0.01213.7670.0130.0130.0000.0000.0000.000
44A1066LEU0-0.011-0.00417.1510.0160.0160.0000.0000.0000.000
45A1067VAL00.0260.01320.2480.0020.0020.0000.0000.0000.000
46A1068GLN0-0.020-0.02123.3910.0140.0140.0000.0000.0000.000
47A1069TYR0-0.043-0.04226.121-0.005-0.0050.0000.0000.0000.000
48A1070SER0-0.023-0.01129.0910.0040.0040.0000.0000.0000.000
49A1071ASP-1-0.827-0.90832.558-0.049-0.0490.0000.0000.0000.000
50A1072ARG10.9000.95533.1080.0570.0570.0000.0000.0000.000
51A1073THR00.0480.01027.6510.0020.0020.0000.0000.0000.000
52A1074ARG10.8400.92328.0480.0880.0880.0000.0000.0000.000
53A1075PRO0-0.004-0.00523.814-0.002-0.0020.0000.0000.0000.000
54A1076GLU-1-0.846-0.90523.349-0.096-0.0960.0000.0000.0000.000
55A1077PHE0-0.049-0.03417.2720.0040.0040.0000.0000.0000.000
56A1078TYR00.0260.00519.2630.0060.0060.0000.0000.0000.000
57A1079LEU00.0360.03112.832-0.007-0.0070.0000.0000.0000.000
58A1080ASN00.0070.00214.483-0.050-0.0500.0000.0000.0000.000
59A1081SER0-0.073-0.01816.6640.0290.0290.0000.0000.0000.000
60A1082HIS00.0100.00716.6470.0280.0280.0000.0000.0000.000
61A1083MET00.0150.00714.279-0.047-0.0470.0000.0000.0000.000
62A1084ASP-1-0.825-0.93213.829-0.246-0.2460.0000.0000.0000.000
63A1085GLN00.0780.02813.1720.0240.0240.0000.0000.0000.000
64A1086GLN00.0030.00915.5530.0300.0300.0000.0000.0000.000
65A1087GLY00.0320.01718.4950.0180.0180.0000.0000.0000.000
66A1088VAL00.0070.00314.8090.0160.0160.0000.0000.0000.000
67A1089ILE00.0360.02417.6710.0200.0200.0000.0000.0000.000
68A1090SER0-0.054-0.04120.0250.0220.0220.0000.0000.0000.000
69A1091ALA0-0.066-0.03221.1880.0130.0130.0000.0000.0000.000
70A1092ILE00.0380.02818.4040.0110.0110.0000.0000.0000.000
71A1093ARG10.9290.95722.8310.0800.0800.0000.0000.0000.000
72A1094ARG10.9120.96224.6160.1240.1240.0000.0000.0000.000
73A1095LEU0-0.0140.02623.5360.0040.0040.0000.0000.0000.000
74A1096THR00.006-0.00227.7920.0070.0070.0000.0000.0000.000
75A1097LEU0-0.0250.00330.499-0.004-0.0040.0000.0000.0000.000
76A1098LEU0-0.071-0.01730.2030.0010.0010.0000.0000.0000.000
77A1099GLY00.0120.00632.3700.0020.0020.0000.0000.0000.000
78A1100GLY0-0.046-0.03034.754-0.004-0.0040.0000.0000.0000.000
79A1101PRO0-0.0150.00536.9860.0010.0010.0000.0000.0000.000
80A1102THR00.0400.00435.9420.0030.0030.0000.0000.0000.000
81A1103PRO0-0.0240.01031.182-0.004-0.0040.0000.0000.0000.000
82A1104ASN00.0050.00832.7880.0060.0060.0000.0000.0000.000
83A1105THR00.0590.01727.118-0.007-0.0070.0000.0000.0000.000
84A1106GLY00.0210.00428.000-0.006-0.0060.0000.0000.0000.000
85A1107ALA00.007-0.00628.720-0.006-0.0060.0000.0000.0000.000
86A1108ALA0-0.014-0.00226.803-0.009-0.0090.0000.0000.0000.000
87A1109LEU0-0.007-0.00723.243-0.013-0.0130.0000.0000.0000.000
88A1110GLU-1-0.881-0.95424.088-0.079-0.0790.0000.0000.0000.000
89A1111PHE0-0.042-0.01525.064-0.010-0.0100.0000.0000.0000.000
90A1112VAL00.0480.00220.094-0.013-0.0130.0000.0000.0000.000
91A1113LEU0-0.0050.00220.289-0.019-0.0190.0000.0000.0000.000
92A1114ARG10.9190.95521.6760.0820.0820.0000.0000.0000.000
93A1115ASN0-0.049-0.02723.714-0.001-0.0010.0000.0000.0000.000
94A1116ILE0-0.044-0.01418.534-0.007-0.0070.0000.0000.0000.000
95A1117LEU0-0.0270.00315.922-0.034-0.0340.0000.0000.0000.000
96A1118THR00.0370.02718.1140.0030.0030.0000.0000.0000.000
97A1119SER00.0480.01417.176-0.023-0.0230.0000.0000.0000.000
98A1120SER0-0.039-0.01218.254-0.018-0.0180.0000.0000.0000.000
99A1121THR0-0.063-0.03519.6530.0000.0000.0000.0000.0000.000
100A1122GLY00.0320.00215.972-0.007-0.0070.0000.0000.0000.000
101A1123SER0-0.037-0.01313.697-0.099-0.0990.0000.0000.0000.000
102A1124ARG10.8450.8856.6351.7471.7470.0000.0000.0000.000
103A1125ILE00.0080.00911.667-0.005-0.0050.0000.0000.0000.000
104A1126ALA0-0.052-0.02613.7300.0360.0360.0000.0000.0000.000
105A1127GLU-1-0.944-0.96810.667-0.635-0.6350.0000.0000.0000.000
106A1128GLY0-0.016-0.00810.497-0.011-0.0110.0000.0000.0000.000
107A1129VAL0-0.051-0.0186.8170.0390.0390.0000.0000.0000.000
108A1130PRO0-0.0060.0006.7240.1120.1120.0000.0000.0000.000
109A1131GLN00.0160.0039.725-0.070-0.0700.0000.0000.0000.000
110A1132LEU0-0.0070.0019.4230.0760.0760.0000.0000.0000.000
111A1133LEU00.0030.00813.287-0.029-0.0290.0000.0000.0000.000
112A1134ILE00.0150.00414.4560.0310.0310.0000.0000.0000.000
113A1135VAL00.0090.00318.202-0.011-0.0110.0000.0000.0000.000
114A1136LEU0-0.0100.00321.1010.0120.0120.0000.0000.0000.000
115A1137THR0-0.023-0.05224.449-0.005-0.0050.0000.0000.0000.000
116A1138ALA00.0130.00028.1820.0050.0050.0000.0000.0000.000
117A1139GLU-1-0.771-0.81331.382-0.034-0.0340.0000.0000.0000.000
118A1140PRO0-0.017-0.00932.528-0.002-0.0020.0000.0000.0000.000
119A1141SER0-0.029-0.01531.698-0.004-0.0040.0000.0000.0000.000
120A1142GLY0-0.021-0.00833.5000.0030.0030.0000.0000.0000.000
121A1143ASP-1-0.830-0.91432.767-0.049-0.0490.0000.0000.0000.000
122A1144ASP-1-0.807-0.90833.901-0.030-0.0300.0000.0000.0000.000
123A1145VAL00.0660.01428.896-0.004-0.0040.0000.0000.0000.000
124A1146ARG10.9500.99429.3060.0250.0250.0000.0000.0000.000
125A1147GLY0-0.055-0.02529.8600.0000.0000.0000.0000.0000.000
126A1148PRO00.0660.03527.997-0.002-0.0020.0000.0000.0000.000
127A1149SER0-0.060-0.03125.457-0.005-0.0050.0000.0000.0000.000
128A1150VAL0-0.050-0.02324.812-0.001-0.0010.0000.0000.0000.000
129A1151VAL00.0040.00925.253-0.003-0.0030.0000.0000.0000.000
130A1152LEU0-0.010-0.01621.302-0.009-0.0090.0000.0000.0000.000
131A1153LYS10.8250.93520.6510.0110.0110.0000.0000.0000.000
132A1154GLN0-0.071-0.04820.768-0.003-0.0030.0000.0000.0000.000
133A1155GLY0-0.0190.00221.147-0.001-0.0010.0000.0000.0000.000
134A1156GLY0-0.0010.00717.135-0.020-0.0200.0000.0000.0000.000
135A1157ALA0-0.018-0.00715.729-0.024-0.0240.0000.0000.0000.000
136A1158VAL0-0.023-0.01613.7420.0300.0300.0000.0000.0000.000
137A1159PRO0-0.027-0.01715.930-0.007-0.0070.0000.0000.0000.000
138A1160ILE00.0030.00614.8440.0220.0220.0000.0000.0000.000
139A1161GLY00.0070.00919.162-0.013-0.0130.0000.0000.0000.000
140A1162ILE0-0.006-0.01619.8230.0110.0110.0000.0000.0000.000
141A1163GLY00.0280.00223.960-0.007-0.0070.0000.0000.0000.000
142A1164ILE0-0.031-0.03326.3180.0060.0060.0000.0000.0000.000
143A1165GLY00.0080.00529.705-0.003-0.0030.0000.0000.0000.000
144A1166ASN0-0.055-0.03433.4490.0040.0040.0000.0000.0000.000
145A1167ALA0-0.0250.01330.151-0.001-0.0010.0000.0000.0000.000
146A1168ASP-1-0.791-0.89732.199-0.007-0.0070.0000.0000.0000.000
147A1169ILE00.024-0.00430.263-0.001-0.0010.0000.0000.0000.000
148A1170SER00.0040.01029.6280.0020.0020.0000.0000.0000.000
149A1171GLU-1-0.854-0.92729.894-0.026-0.0260.0000.0000.0000.000
150A1172MET0-0.020-0.00225.877-0.006-0.0060.0000.0000.0000.000
151A1173GLN0-0.010-0.00325.177-0.002-0.0020.0000.0000.0000.000
152A1174THR0-0.071-0.02725.6050.0010.0010.0000.0000.0000.000
153A1175ILE0-0.025-0.03122.932-0.004-0.0040.0000.0000.0000.000
154A1176SER0-0.034-0.01521.370-0.008-0.0080.0000.0000.0000.000
155A1177PHE0-0.002-0.00317.5240.0020.0020.0000.0000.0000.000
156A1178ILE00.010-0.00720.0390.0030.0030.0000.0000.0000.000
157A1179PRO00.022-0.01222.3270.0000.0000.0000.0000.0000.000
158A1180ASP-1-0.910-0.95321.7060.0740.0740.0000.0000.0000.000
159A1181PHE0-0.039-0.02816.4460.0040.0040.0000.0000.0000.000
160A1182ALA0-0.0200.01520.611-0.005-0.0050.0000.0000.0000.000
161A1183VAL0-0.0010.00121.8300.0080.0080.0000.0000.0000.000
162A1184ALA0-0.0040.00224.661-0.008-0.0080.0000.0000.0000.000
163A1185ILE0-0.027-0.00726.1690.0050.0050.0000.0000.0000.000
164A1186PRO00.0360.01829.253-0.004-0.0040.0000.0000.0000.000
165A1187THR0-0.029-0.04931.728-0.004-0.0040.0000.0000.0000.000
166A1188PHE00.0890.02628.7870.0020.0020.0000.0000.0000.000
167A1189ARG10.8960.96229.188-0.004-0.0040.0000.0000.0000.000
168A1190GLU-1-0.790-0.87729.1870.0070.0070.0000.0000.0000.000
169A1191LEU00.0340.03223.8980.0050.0050.0000.0000.0000.000
170A1192GLY0-0.007-0.00923.9670.0020.0020.0000.0000.0000.000
171A1193THR0-0.086-0.06323.5130.0070.0070.0000.0000.0000.000
172A1194ILE00.0390.01922.0660.0090.0090.0000.0000.0000.000
173A1195GLN0-0.0030.00218.3940.0030.0030.0000.0000.0000.000
174A1196GLN00.0310.01815.205-0.017-0.0170.0000.0000.0000.000
175A1197VAL00.0640.03316.5370.0150.0150.0000.0000.0000.000
176A1198ILE0-0.030-0.00415.8110.0100.0100.0000.0000.0000.000
177A1199SER00.0210.00213.238-0.013-0.0130.0000.0000.0000.000
178A1200GLU-1-0.902-0.96611.9310.1960.1960.0000.0000.0000.000
179A1201ARG10.8760.93312.476-0.057-0.0570.0000.0000.0000.000
180A1202VAL00.005-0.0078.8520.0130.0130.0000.0000.0000.000
181A1203ILE0-0.061-0.0347.8460.0480.0480.0000.0000.0000.000
182A1204GLN0-0.0310.0098.1990.1520.1520.0000.0000.0000.000
183A1205LEU0-0.0120.00610.1900.0470.0470.0000.0000.0000.000
184A1206ASN0-0.013-0.0095.600-0.284-0.2840.0000.0000.0000.000
185A1207ARG10.9720.9705.7260.3860.3860.0000.0000.0000.000
186A1208GLU-1-0.915-0.9537.1500.7170.7170.0000.0000.0000.000
187A1209GLU-1-0.853-0.9249.8510.1830.1830.0000.0000.0000.000
188A1210LEU0-0.017-0.02710.149-0.073-0.0730.0000.0000.0000.000
189A1211SER0-0.046-0.00912.178-0.053-0.0530.0000.0000.0000.000
190A1212SER0-0.067-0.03514.131-0.031-0.0310.0000.0000.0000.000
191A1213LEU0-0.062-0.00415.725-0.014-0.0140.0000.0000.0000.000
192A1214LYS10.8970.94017.605-0.073-0.0730.0000.0000.0000.000
193A1215PRO00.0210.03119.5700.0050.0050.0000.0000.0000.000
194A1216ILE0-0.0010.00021.6070.0020.0020.0000.0000.0000.000
195A1217LEU0-0.014-0.01024.229-0.007-0.0070.0000.0000.0000.000
196A1218THR00.002-0.02027.6760.0030.0030.0000.0000.0000.000
197A1219PRO0-0.033-0.01530.5340.0010.0010.0000.0000.0000.000
198A1220SER0-0.0020.01132.5070.0000.0000.0000.0000.0000.000
199A1221NME00.0340.03134.2770.0000.0000.0000.0000.0000.000