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About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XNKQP

Calculation Name: 3OMQ-A-Xray11

Preferred Name: Estrogen receptor beta

Target Type: SINGLE PROTEIN

Ligand Name: 2-[(trifluoromethyl)sulfonyl]-1,2,3,4-tetrahydroisoquinolin-6-ol

ligand 3-letter code: W23

PDB ID: 3OMQ

Chain ID: A

ChEMBL ID: CHEMBL242

UniProt ID: Q92731

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.2017021
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3058763.845338
FMO2-HF: Nuclear repulsion 2961854.063424
FMO2-HF: Total energy -96909.781914
FMO2-MP2: Total energy -97180.216407


3D Structure
Snapshot
 
Ligand structure

W23

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-63.007-36.81940.424-18.984-47.627-0.002


Interactive mode: IFIE and PIEDA for fragment #235(C:1:W23)


Summations of interaction energy for fragment #235(C:1:W23)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-63.007-36.81940.424-18.984-47.6270.002
Interaction energy analysis for fragmet #235(C:1:W23)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.003 / q_NPA : -0.024
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1C264SER10.7100.82225.9590.0540.0540.0000.0000.0000.000
2C265PRO00.0670.02626.101-0.004-0.0040.0000.0000.0000.000
3C266GLU-1-0.702-0.85524.690-0.191-0.1910.0000.0000.0000.000
4C267GLN00.0550.04824.578-0.021-0.0210.0000.0000.0000.000
5C268LEU00.0190.02821.358-0.022-0.0220.0000.0000.0000.000
6C269VAL00.0070.00520.276-0.023-0.0230.0000.0000.0000.000
7C270LEU0-0.012-0.00119.706-0.040-0.0400.0000.0000.0000.000
8C271THR00.018-0.01120.133-0.037-0.0370.0000.0000.0000.000
9C272LEU0-0.008-0.01216.297-0.026-0.0260.0000.0000.0000.000
10C273LEU0-0.036-0.01115.544-0.068-0.0680.0000.0000.0000.000
11C274GLU-1-0.924-0.97015.829-0.465-0.4650.0000.0000.0000.000
12C275ALA00.0150.01315.261-0.042-0.0420.0000.0000.0000.000
13C276GLU-1-0.766-0.83210.173-1.145-1.1450.0000.0000.0000.000
14C277PRO0-0.0010.0137.8870.0840.0840.0000.0000.0000.000
15C278PRO0-0.024-0.01810.060-0.003-0.0030.0000.0000.0000.000
16C279HIS0-0.024-0.0116.256-0.740-0.7400.0000.0000.0000.000
17C280VAL0-0.022-0.0105.4090.7780.7780.0000.0000.0000.000
18C281LEU0-0.018-0.0106.746-0.200-0.2000.0000.0000.0000.000
19C282ILE0-0.013-0.0086.4000.0830.0830.0000.0000.0000.000
20C283SER0-0.001-0.0119.181-0.002-0.0020.0000.0000.0000.000
21C284ARG10.7870.84411.1880.9260.9260.0000.0000.0000.000
22C285PRO0-0.040-0.00911.2990.1090.1090.0000.0000.0000.000
23C286SER00.0010.00914.2400.1070.1070.0000.0000.0000.000
24C287ALA0-0.016-0.00817.3060.0800.0800.0000.0000.0000.000
25C288PRO00.0240.00316.211-0.058-0.0580.0000.0000.0000.000
26C289PHE00.0180.0229.681-0.004-0.0040.0000.0000.0000.000
27C290THR00.002-0.00812.1600.1240.1240.0000.0000.0000.000
28C291GLU-1-0.737-0.8739.1320.3970.3970.0000.0000.0000.000
29C292ALA00.0640.0308.8440.0080.0080.0000.0000.0000.000
30C293SER0-0.028-0.02410.092-0.070-0.0700.0000.0000.0000.000
31C294MET0-0.0070.0156.101-0.271-0.2710.0000.0000.0000.000
32C295MET00.0600.0313.050-2.204-0.8290.134-0.564-0.9450.004
33C296MET0-0.0120.0246.225-0.207-0.2070.0000.0000.0000.000
34C297SER0-0.022-0.0267.428-0.295-0.2950.0000.0000.0000.000
35C298LEU0-0.012-0.0102.663-3.433-0.9170.740-0.836-2.4190.005
36C299THR0-0.007-0.0262.488-7.115-4.6961.056-1.330-2.144-0.022
37C300LYS10.7650.8695.0560.9711.080-0.001-0.005-0.1030.000
38C301LEU00.0030.0042.170-1.0690.1631.418-0.556-2.0930.002
39C302ALA00.0150.0042.242-2.906-0.9282.259-1.405-2.8330.002
40C303ASP-1-0.718-0.8563.5010.091-0.0740.0900.399-0.3240.001
41C304LYS10.7880.8986.4131.7991.7990.0000.0000.0000.000
42C305GLU-1-0.724-0.8371.660-29.934-35.71014.251-5.116-3.359-0.056
43C306LEU00.0020.0055.6610.8640.8640.0000.0000.0000.000
44C307VAL0-0.031-0.0238.0210.3280.3280.0000.0000.0000.000
45C308HIS0-0.013-0.0138.3380.5010.5010.0000.0000.0000.000
46C309MET0-0.0310.0056.8820.3140.3140.0000.0000.0000.000
47C310ILE00.0250.01010.0360.2390.2390.0000.0000.0000.000
48C311SER0-0.010-0.02013.2820.1250.1250.0000.0000.0000.000
49C312TRP0-0.0230.00911.2290.0380.0380.0000.0000.0000.000
50C313ALA00.0550.01713.2570.0750.0750.0000.0000.0000.000
51C314LYS10.8640.92215.3690.0900.0900.0000.0000.0000.000
52C315LYS10.8290.92914.6060.7150.7150.0000.0000.0000.000
53C316ILE0-0.029-0.00215.6540.0180.0180.0000.0000.0000.000
54C317PRO00.005-0.00419.9360.0440.0440.0000.0000.0000.000
55C318GLY0-0.005-0.00923.2750.0050.0050.0000.0000.0000.000
56C319PHE00.017-0.01517.5240.0340.0340.0000.0000.0000.000
57C320VAL00.0090.00521.2330.0280.0280.0000.0000.0000.000
58C321GLU-1-0.807-0.88523.032-0.002-0.0020.0000.0000.0000.000
59C322LEU0-0.0450.01221.5010.0180.0180.0000.0000.0000.000
60C323SER00.024-0.01425.191-0.015-0.0150.0000.0000.0000.000
61C324LEU0-0.056-0.02024.2910.0040.0040.0000.0000.0000.000
62C325PHE00.0510.01923.6780.0020.0020.0000.0000.0000.000
63C326ASP-1-0.749-0.83421.6520.3710.3710.0000.0000.0000.000
64C327GLN0-0.086-0.04919.940-0.007-0.0070.0000.0000.0000.000
65C328VAL0-0.0180.00017.196-0.071-0.0710.0000.0000.0000.000
66C329ARG10.9060.94016.849-0.401-0.4010.0000.0000.0000.000
67C330LEU0-0.027-0.02216.9170.1120.1120.0000.0000.0000.000
68C331LEU00.0090.00412.1220.0970.0970.0000.0000.0000.000
69C332GLU-1-0.910-0.97112.2251.0211.0210.0000.0000.0000.000
70C333SER0-0.056-0.02312.7170.3720.3720.0000.0000.0000.000
71C334CYS0-0.0210.00010.8230.1060.1060.0000.0000.0000.000
72C335TRP00.0710.0215.0750.2200.454-0.001-0.004-0.2290.000
73C336MET00.0220.0252.500-3.876-2.5795.019-1.295-5.0210.013
74C337GLU-1-0.813-0.9014.1600.0630.2770.000-0.045-0.1690.000
75C338VAL0-0.014-0.0116.575-0.613-0.6130.0000.0000.0000.000
76C339LEU0-0.0250.0012.660-4.400-1.3372.840-1.458-4.4450.012
77C340MET0-0.028-0.0012.375-2.859-0.4792.813-1.332-3.862-0.009
78C341MET0-0.015-0.0073.4870.1730.2480.0100.145-0.2290.000
79C342GLY0-0.0010.0054.956-0.249-0.172-0.001-0.007-0.0690.000
80C343LEU00.0190.0172.388-3.663-1.6413.267-1.220-4.0690.005
81C344MET0-0.0110.0004.299-0.427-0.2240.001-0.046-0.1580.000
82C345TRP00.001-0.0017.1970.1330.1330.0000.0000.0000.000
83C346ARG10.7120.8042.2677.6818.8600.490-0.658-1.0100.002
84C347SER00.006-0.0127.466-0.062-0.0620.0000.0000.0000.000
85C348ILE00.0090.01910.0860.0930.0930.0000.0000.0000.000
86C349ASP-1-0.871-0.94012.695-0.533-0.5330.0000.0000.0000.000
87C350HIS0-0.046-0.01912.8140.0730.0730.0000.0000.0000.000
88C351PRO0-0.013-0.00513.6290.0010.0010.0000.0000.0000.000
89C352GLY00.0040.00313.910-0.032-0.0320.0000.0000.0000.000
90C353LYS10.8180.88411.7540.6120.6120.0000.0000.0000.000
91C354LEU0-0.0150.0035.5370.0310.0310.0000.0000.0000.000
92C355ILE0-0.0010.0048.287-0.117-0.1170.0000.0000.0000.000
93C356PHE00.0260.0042.388-4.037-0.5951.244-0.989-3.6960.009
94C357ALA00.0170.0154.757-1.811-1.690-0.001-0.012-0.1090.000
95C358PRO0-0.014-0.0227.4960.3790.3790.0000.0000.0000.000
96C359ASP-1-0.853-0.89310.949-1.036-1.0360.0000.0000.0000.000
97C360LEU0-0.009-0.0026.2040.1570.1570.0000.0000.0000.000
98C361VAL0-0.0060.0018.734-0.174-0.1740.0000.0000.0000.000
99C362LEU0-0.017-0.0047.1580.1350.1350.0000.0000.0000.000
100C363ASP-1-0.786-0.88310.639-0.615-0.6150.0000.0000.0000.000
101C364ARG10.8010.8659.8610.1490.1490.0000.0000.0000.000
102C365ASP-1-0.815-0.8879.978-0.180-0.1800.0000.0000.0000.000
103C366GLU-1-0.724-0.82710.693-0.847-0.8470.0000.0000.0000.000
104C367GLY00.0270.0027.704-0.019-0.0190.0000.0000.0000.000
105C368LYS10.8330.8958.4280.2750.2750.0000.0000.0000.000
106C369CYS0-0.068-0.02210.2200.0620.0620.0000.0000.0000.000
107C370VAL00.0100.0065.7420.0140.0140.0000.0000.0000.000
108C371GLU-1-0.798-0.8778.9010.8200.8200.0000.0000.0000.000
109C372GLY00.014-0.0037.7700.1570.1570.0000.0000.0000.000
110C373ILE0-0.0210.0072.549-1.912-0.1631.606-1.410-1.9460.016
111C374LEU00.0120.0065.534-0.078-0.0780.0000.0000.0000.000
112C375GLU-1-0.815-0.8958.1681.6691.6690.0000.0000.0000.000
113C376ILE00.0280.0123.080-2.112-0.2930.170-0.648-1.3410.004
114C377PHE0-0.006-0.0073.007-1.787-0.6720.068-0.412-0.7710.003
115C378ASP-1-0.793-0.8936.892-0.141-0.1410.0000.0000.0000.000
116C379MET0-0.050-0.0137.685-0.088-0.0880.0000.0000.0000.000
117C380LEU00.0260.0262.947-0.982-0.1020.150-0.190-0.840-0.001
118C381LEU00.0230.0307.1450.0610.0610.0000.0000.0000.000
119C382ALA0-0.0180.01010.2940.0390.0390.0000.0000.0000.000
120C383THR0-0.024-0.0319.0120.0820.0820.0000.0000.0000.000
121C384THR0-0.019-0.0348.707-0.027-0.0270.0000.0000.0000.000
122C385SER0-0.060-0.04411.0550.0200.0200.0000.0000.0000.000
123C386ARG10.8030.87813.963-0.040-0.0400.0000.0000.0000.000
124C387PHE00.052-0.00310.3490.0240.0240.0000.0000.0000.000
125C388ARG10.8440.92913.2460.4290.4290.0000.0000.0000.000
126C389GLU-1-0.848-0.89717.1710.0090.0090.0000.0000.0000.000
127C390LEU0-0.016-0.00117.608-0.004-0.0040.0000.0000.0000.000
128C391LYS10.8400.92218.5600.1710.1710.0000.0000.0000.000
129C392LEU00.0100.02913.2720.0110.0110.0000.0000.0000.000
130C393GLN00.004-0.01316.957-0.067-0.0670.0000.0000.0000.000
131C394HIS00.0260.01413.1620.0230.0230.0000.0000.0000.000
132C395LYS10.9060.92516.2710.2500.2500.0000.0000.0000.000
133C396GLU-1-0.746-0.82917.622-0.126-0.1260.0000.0000.0000.000
134C397TYR0-0.012-0.0279.0660.0330.0330.0000.0000.0000.000
135C398LEU0-0.0050.01113.4340.0290.0290.0000.0000.0000.000
136C399CYS0-0.055-0.02215.0270.0350.0350.0000.0000.0000.000
137C400VAL00.0380.00212.9100.0490.0490.0000.0000.0000.000
138C401LYS10.8200.8978.0611.0601.0600.0000.0000.0000.000
139C402ALA00.0170.01212.2060.0750.0750.0000.0000.0000.000
140C403MET0-0.041-0.03015.3610.0510.0510.0000.0000.0000.000
141C404ILE0-0.015-0.0079.9600.0540.0540.0000.0000.0000.000
142C405LEU0-0.022-0.00413.4460.1230.1230.0000.0000.0000.000
143C406LEU0-0.007-0.01314.4990.0310.0310.0000.0000.0000.000
144C407ASN0-0.055-0.02416.524-0.050-0.0500.0000.0000.0000.000
145C408SER00.0330.01416.6650.1240.1240.0000.0000.0000.000
146C409SER00.011-0.00117.964-0.098-0.0980.0000.0000.0000.000
147C410MET0-0.035-0.01219.6250.0700.0700.0000.0000.0000.000
148C411TYR00.0430.05119.729-0.043-0.0430.0000.0000.0000.000
149C412PRO0-0.003-0.00324.177-0.030-0.0300.0000.0000.0000.000
150C413LEU00.0190.01524.7990.0350.0350.0000.0000.0000.000
151C414VAL0-0.012-0.01028.543-0.020-0.0200.0000.0000.0000.000
152C415THR00.015-0.00128.164-0.009-0.0090.0000.0000.0000.000
153C416ALA0-0.0170.00431.436-0.016-0.0160.0000.0000.0000.000
154C417THR0-0.064-0.05331.543-0.010-0.0100.0000.0000.0000.000
155C418GLN0-0.0060.01928.6600.0210.0210.0000.0000.0000.000
156C419ASP-1-0.816-0.90629.3800.1350.1350.0000.0000.0000.000
157C420ALA00.0480.01131.9200.0210.0210.0000.0000.0000.000
158C421ASP-1-0.816-0.90031.5590.1070.1070.0000.0000.0000.000
159C422SER00.001-0.02125.733-0.001-0.0010.0000.0000.0000.000
160C423SER00.0370.01525.609-0.009-0.0090.0000.0000.0000.000
161C424ARG10.8440.90126.044-0.101-0.1010.0000.0000.0000.000
162C425LYS10.7540.87626.170-0.063-0.0630.0000.0000.0000.000
163C426LEU00.0520.02720.220-0.026-0.0260.0000.0000.0000.000
164C427ALA00.0240.01523.517-0.010-0.0100.0000.0000.0000.000
165C428HIS0-0.0050.00625.079-0.005-0.0050.0000.0000.0000.000
166C429LEU0-0.0040.01220.804-0.023-0.0230.0000.0000.0000.000
167C430LEU00.0230.01719.363-0.031-0.0310.0000.0000.0000.000
168C431ASN0-0.036-0.01922.145-0.024-0.0240.0000.0000.0000.000
169C432ALA00.0030.00824.897-0.022-0.0220.0000.0000.0000.000
170C433VAL00.003-0.00818.476-0.038-0.0380.0000.0000.0000.000
171C434THR00.012-0.00721.853-0.012-0.0120.0000.0000.0000.000
172C435ASP-1-0.830-0.90023.333-0.014-0.0140.0000.0000.0000.000
173C436ALA0-0.042-0.00822.273-0.013-0.0130.0000.0000.0000.000
174C437LEU00.0360.01418.822-0.020-0.0200.0000.0000.0000.000
175C438VAL00.0270.01221.985-0.009-0.0090.0000.0000.0000.000
176C439TRP00.0400.01325.444-0.017-0.0170.0000.0000.0000.000
177C440VAL0-0.040-0.03721.238-0.013-0.0130.0000.0000.0000.000
178C441ILE00.0010.01521.597-0.008-0.0080.0000.0000.0000.000
179C442ALA0-0.0230.00324.830-0.003-0.0030.0000.0000.0000.000
180C443LYS10.7620.88926.1230.1470.1470.0000.0000.0000.000
181C444SER0-0.043-0.02625.074-0.011-0.0110.0000.0000.0000.000
182C445GLY0-0.008-0.00227.083-0.001-0.0010.0000.0000.0000.000
183C446ILE0-0.0230.00326.6480.0100.0100.0000.0000.0000.000
184C447SER00.0530.02130.7480.0050.0050.0000.0000.0000.000
185C448SER00.0640.02431.5370.0040.0040.0000.0000.0000.000
186C449GLN00.0220.02131.0280.0080.0080.0000.0000.0000.000
187C450GLN00.0360.00629.0930.0190.0190.0000.0000.0000.000
188C451GLN0-0.026-0.01927.1940.0040.0040.0000.0000.0000.000
189C452SER00.015-0.00226.3280.0070.0070.0000.0000.0000.000
190C453MET0-0.0040.00425.8490.0200.0200.0000.0000.0000.000
191C454ARG10.7670.85320.5420.1410.1410.0000.0000.0000.000
192C455LEU00.0370.01421.8160.0020.0020.0000.0000.0000.000
193C456ALA00.0230.01121.7690.0230.0230.0000.0000.0000.000
194C457ASN0-0.036-0.02620.3360.0360.0360.0000.0000.0000.000
195C458LEU00.0180.00616.4670.0200.0200.0000.0000.0000.000
196C459LEU0-0.009-0.00317.0130.0270.0270.0000.0000.0000.000
197C460MET0-0.020-0.01317.9660.0630.0630.0000.0000.0000.000
198C461LEU00.0110.01512.9650.0700.0700.0000.0000.0000.000
199C462LEU00.0030.01313.2910.0470.0470.0000.0000.0000.000
200C463SER0-0.026-0.01912.9540.1570.1570.0000.0000.0000.000
201C464HIS0-0.008-0.00312.0080.1700.1700.0000.0000.0000.000
202C465VAL0-0.0010.0057.6770.1380.1380.0000.0000.0000.000
203C466ARG10.8430.8958.359-1.145-1.1450.0000.0000.0000.000
204C467HIS0-0.029-0.0119.8890.5190.5190.0000.0000.0000.000
205C468ALA00.0510.0046.3120.3970.3970.0000.0000.0000.000
206C469SER0-0.0110.0005.3171.8011.8010.0000.0000.0000.000
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208C471LYS10.7570.8696.941-1.871-1.8710.0000.0000.0000.000
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