FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XQ8VY

Calculation Name: 1ERE-A-Xray1

Preferred Name: Estrogen receptor alpha

Target Type: SINGLE PROTEIN

Ligand Name: estradiol

ligand 3-letter code: EST

PDB ID: 1ERE

Chain ID: A

ChEMBL ID: CHEMBL206

UniProt ID: P03372

Base Structure: X-ray

Registration Date: 2018-02-16

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20180117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 237
LigandResidueName EST
LigandFragmentNumber 237
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -3146122.745044
FMO2-HF: Nuclear repulsion 3047985.452878
FMO2-HF: Total energy -98137.292165
FMO2-MP2: Total energy -98414.457659


3D Structure
Snapshot
 
Ligand structure

EST

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-110.521-110.790110.814-51.648-58.9030.160


Interactive mode: IFIE and PIEDA for fragment #237(A:600:EST)


Summations of interaction energy for fragment #237(A:600:EST)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-110.521-110.79110.814-51.648-58.903-0.16
Interaction energy analysis for fragmet #237(A:600:EST)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.158 / q_NPA : -0.166
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A309SER10.8720.91630.058-0.062-0.0620.0000.0000.0000.000
2A310LEU00.0870.05025.579-0.002-0.0020.0000.0000.0000.000
3A311THR00.0400.01729.4620.0070.0070.0000.0000.0000.000
4A312ALA00.0380.02226.9960.0020.0020.0000.0000.0000.000
5A313ASP-1-0.774-0.89125.9890.1370.1370.0000.0000.0000.000
6A314GLN00.0290.01326.0170.0030.0030.0000.0000.0000.000
7A315MET0-0.0280.00521.427-0.008-0.0080.0000.0000.0000.000
8A316VAL00.0650.02721.1460.0060.0060.0000.0000.0000.000
9A317SER00.0320.01120.8070.0120.0120.0000.0000.0000.000
10A318ALA0-0.0190.00021.068-0.005-0.0050.0000.0000.0000.000
11A319LEU0-0.029-0.02617.376-0.012-0.0120.0000.0000.0000.000
12A320LEU0-0.034-0.03216.7620.0100.0100.0000.0000.0000.000
13A321ASP-1-0.908-0.94417.1290.0630.0630.0000.0000.0000.000
14A322ALA0-0.162-0.07316.009-0.032-0.0320.0000.0000.0000.000
15A323GLU-1-0.884-0.93411.4930.4230.4230.0000.0000.0000.000
16A324PRO0-0.0110.0098.848-0.060-0.0600.0000.0000.0000.000
17A325PRO0-0.0150.00010.4130.1020.1020.0000.0000.0000.000
18A326ILE00.0090.0018.080-0.101-0.1010.0000.0000.0000.000
19A327LEU0-0.035-0.0176.4790.1170.1170.0000.0000.0000.000
20A328TYR00.006-0.0038.2960.2510.2510.0000.0000.0000.000
21A329SER00.0210.0178.264-0.332-0.3320.0000.0000.0000.000
22A330GLU-1-0.789-0.8818.206-1.112-1.1120.0000.0000.0000.000
23A331TYR0-0.007-0.02111.4100.1000.1000.0000.0000.0000.000
24A332ASP-1-0.787-0.86312.079-0.166-0.1660.0000.0000.0000.000
25A333PRO00.0170.01913.6570.0670.0670.0000.0000.0000.000
26A334THR0-0.045-0.04515.7840.0060.0060.0000.0000.0000.000
27A335ARG10.8330.92915.2100.2690.2690.0000.0000.0000.000
28A336PRO0-0.030-0.01216.2360.0240.0240.0000.0000.0000.000
29A337PHE0-0.0040.00111.6040.0020.0020.0000.0000.0000.000
30A338SER00.0140.00612.0780.0060.0060.0000.0000.0000.000
31A339GLU-1-0.736-0.8598.624-0.559-0.5590.0000.0000.0000.000
32A340ALA00.0390.0048.5890.0180.0180.0000.0000.0000.000
33A341SER0-0.077-0.0629.616-0.002-0.0020.0000.0000.0000.000
34A342MET00.0150.0126.2010.0170.0170.0000.0000.0000.000
35A343MET00.0220.0122.795-4.189-1.6800.502-0.975-2.0370.011
36A344GLY00.0220.0135.186-0.342-0.231-0.001-0.001-0.1090.000
37A345LEU0-0.016-0.0106.983-0.307-0.3070.0000.0000.0000.000
38A346LEU0-0.0080.0052.536-3.443-0.6980.883-0.578-3.0510.001
39A347THR00.0510.0162.606-7.798-4.2190.989-1.728-2.841-0.024
40A348ASN0-0.026-0.0173.969-0.293-0.1380.001-0.001-0.1550.000
41A349LEU0-0.040-0.0192.834-0.7030.5670.137-0.294-1.1130.001
42A350ALA00.0250.0072.503-3.348-1.1101.414-1.024-2.6290.000
43A351ASP-1-0.876-0.9583.443-0.183-0.0760.0600.108-0.2760.001
44A352ARG10.8460.9046.4712.0552.0550.0000.0000.0000.000
45A353GLU-1-0.823-0.8731.310-35.291-69.36068.884-31.055-3.760-0.133
46A354LEU00.0200.0195.8770.8300.8300.0000.0000.0000.000
47A355VAL00.0300.0258.1600.3470.3470.0000.0000.0000.000
48A356HIS0-0.057-0.0398.4760.2860.2860.0000.0000.0000.000
49A357MET0-0.0150.0036.8430.2010.2010.0000.0000.0000.000
50A358ILE00.0640.0419.8230.1620.1620.0000.0000.0000.000
51A359ASN0-0.056-0.03213.1780.1260.1260.0000.0000.0000.000
52A360TRP0-0.029-0.01811.7510.0810.0810.0000.0000.0000.000
53A361ALA00.0520.02213.5730.0510.0510.0000.0000.0000.000
54A362LYS10.8450.93215.1750.1090.1090.0000.0000.0000.000
55A363ARG10.9000.95116.7650.0480.0480.0000.0000.0000.000
56A364VAL0-0.0080.01615.8220.0230.0230.0000.0000.0000.000
57A365PRO0-0.033-0.03518.847-0.013-0.0130.0000.0000.0000.000
58A366GLY00.0110.01022.3600.0150.0150.0000.0000.0000.000
59A367PHE00.0230.00717.622-0.007-0.0070.0000.0000.0000.000
60A368VAL0-0.019-0.02421.530-0.013-0.0130.0000.0000.0000.000
61A369ASP-1-0.910-0.94323.4100.0190.0190.0000.0000.0000.000
62A370LEU0-0.0290.00322.0680.0020.0020.0000.0000.0000.000
63A371THR0-0.069-0.03425.568-0.015-0.0150.0000.0000.0000.000
64A372LEU0-0.008-0.02123.7250.0000.0000.0000.0000.0000.000
65A373HIS0-0.007-0.01222.622-0.008-0.0080.0000.0000.0000.000
66A374ASP-1-0.793-0.87821.338-0.008-0.0080.0000.0000.0000.000
67A375GLN0-0.079-0.04619.621-0.007-0.0070.0000.0000.0000.000
68A376VAL00.0230.00617.2850.0030.0030.0000.0000.0000.000
69A377HIS00.0200.03316.578-0.005-0.0050.0000.0000.0000.000
70A378LEU0-0.049-0.02916.0750.0130.0130.0000.0000.0000.000
71A379LEU0-0.058-0.02912.4880.0310.0310.0000.0000.0000.000
72A380GLU-1-0.876-0.95312.366-0.062-0.0620.0000.0000.0000.000
73A381CYS0-0.088-0.04511.5820.0240.0240.0000.0000.0000.000
74A382ALA00.006-0.00111.2490.0310.0310.0000.0000.0000.000
75A383TRP00.0180.0073.980-0.3140.1230.001-0.032-0.4070.000
76A384LEU00.0600.0342.386-1.995-0.0010.961-0.429-2.526-0.002
77A385GLU-1-0.839-0.9104.9490.6440.763-0.001-0.002-0.1170.000
78A386ILE0-0.026-0.0066.6820.3190.3190.0000.0000.0000.000
79A387LEU0-0.007-0.0012.409-3.950-0.2562.483-1.664-4.5130.010
80A388MET0-0.065-0.0232.103-2.7450.7762.820-1.483-4.857-0.012
81A389ILE0-0.016-0.0113.8360.1090.2900.0040.026-0.2120.000
82A390GLY00.0310.0105.557-0.205-0.2050.0000.0000.0000.000
83A391LEU0-0.0090.0132.125-1.983-1.5683.857-0.977-3.2960.002
84A392VAL0-0.007-0.0124.468-0.937-0.8190.000-0.020-0.0980.000
85A393TRP0-0.016-0.0137.392-0.301-0.3010.0000.0000.0000.000
86A394ARG10.8820.9562.272-8.821-6.8111.442-1.433-2.0190.016
87A395SER0-0.032-0.0147.358-0.186-0.1860.0000.0000.0000.000
88A396MET0-0.0090.0219.923-0.147-0.1470.0000.0000.0000.000
89A397GLU-1-0.920-0.94212.8790.6290.6290.0000.0000.0000.000
90A398HIS0-0.060-0.02812.556-0.126-0.1260.0000.0000.0000.000
91A399PRO00.018-0.01413.1120.0900.0900.0000.0000.0000.000
92A400GLY0-0.066-0.03113.756-0.047-0.0470.0000.0000.0000.000
93A401LYS10.8780.93311.363-0.614-0.6140.0000.0000.0000.000
94A402LEU00.0370.0235.0240.0210.0210.0000.0000.0000.000
95A403LEU0-0.020-0.0098.124-0.122-0.1220.0000.0000.0000.000
96A404PHE00.0190.0132.548-5.540-1.3422.166-1.295-5.0700.014
97A405ALA00.0450.0165.066-0.545-0.474-0.001-0.006-0.0650.000
98A406PRO00.0150.0167.7170.1680.1680.0000.0000.0000.000
99A407ASN0-0.020-0.01910.8650.0060.0060.0000.0000.0000.000
100A408LEU0-0.023-0.0166.937-0.122-0.1220.0000.0000.0000.000
101A409LEU0-0.0170.0039.4280.2820.2820.0000.0000.0000.000
102A410LEU0-0.0050.0196.708-0.198-0.1980.0000.0000.0000.000
103A411ASP-1-0.804-0.92010.2000.5730.5730.0000.0000.0000.000
104A412ARG10.8990.92410.357-0.388-0.3880.0000.0000.0000.000
105A413ASN0-0.082-0.04811.027-0.101-0.1010.0000.0000.0000.000
106A414GLN00.0450.00110.680-0.031-0.0310.0000.0000.0000.000
107A415GLY00.0790.0487.772-0.051-0.0510.0000.0000.0000.000
108A416LYS10.8430.9078.296-0.330-0.3300.0000.0000.0000.000
109A417CYS0-0.068-0.0129.947-0.051-0.0510.0000.0000.0000.000
110A418VAL0-0.026-0.0035.023-0.023-0.0230.0000.0000.0000.000
111A419GLU-1-0.842-0.9197.879-0.605-0.6050.0000.0000.0000.000
112A420GLY00.007-0.0056.711-0.546-0.5460.0000.0000.0000.000
113A421MET00.0120.0223.179-1.670-0.3510.800-0.401-1.719-0.001
114A422VAL0-0.043-0.0205.0570.5530.620-0.0010.000-0.0660.000
115A423GLU-1-0.844-0.9288.062-0.107-0.1070.0000.0000.0000.000
116A424ILE00.0360.0232.083-0.967-0.3482.331-0.549-2.4010.002
117A425PHE00.030-0.0053.816-0.1170.4010.002-0.052-0.4680.000
118A426ASP-1-0.798-0.8646.9020.5440.5440.0000.0000.0000.000
119A427MET0-0.068-0.0246.7860.0000.0000.0000.0000.0000.000
120A428LEU00.0660.0312.598-1.036-0.0930.355-0.193-1.1050.000
121A429LEU0-0.020-0.0097.197-0.129-0.1290.0000.0000.0000.000
122A430ALA0-0.031-0.0109.985-0.095-0.0950.0000.0000.0000.000
123A431THR0-0.010-0.0199.257-0.131-0.1310.0000.0000.0000.000
124A432SER00.0000.0109.079-0.132-0.1320.0000.0000.0000.000
125A433SER0-0.017-0.02610.931-0.127-0.1270.0000.0000.0000.000
126A434ARG10.9200.96614.145-0.483-0.4830.0000.0000.0000.000
127A435PHE00.0800.00710.538-0.085-0.0850.0000.0000.0000.000
128A436ARG10.9200.96113.702-0.749-0.7490.0000.0000.0000.000
129A437MET0-0.077-0.04116.881-0.075-0.0750.0000.0000.0000.000
130A438MET0-0.111-0.03318.413-0.040-0.0400.0000.0000.0000.000
131A439ASN00.0300.02319.3530.0020.0020.0000.0000.0000.000
132A440LEU0-0.034-0.01113.752-0.036-0.0360.0000.0000.0000.000
133A441GLN00.0380.01417.3120.0100.0100.0000.0000.0000.000
134A442GLY00.0670.02915.9210.0400.0400.0000.0000.0000.000
135A443GLU-1-0.881-0.96116.6850.2950.2950.0000.0000.0000.000
136A444GLU-1-0.748-0.81818.0500.3440.3440.0000.0000.0000.000
137A445PHE0-0.020-0.0129.1490.0190.0190.0000.0000.0000.000
138A446VAL00.0400.01413.8170.0280.0280.0000.0000.0000.000
139A447CYS0-0.034-0.00815.247-0.046-0.0460.0000.0000.0000.000
140A448LEU00.001-0.00713.938-0.021-0.0210.0000.0000.0000.000
141A449LYS10.9010.9699.471-0.564-0.5640.0000.0000.0000.000
142A450SER00.0300.01012.570-0.051-0.0510.0000.0000.0000.000
143A451ILE0-0.052-0.02615.687-0.036-0.0360.0000.0000.0000.000
144A452ILE0-0.035-0.01810.529-0.029-0.0290.0000.0000.0000.000
145A453LEU0-0.0060.00813.844-0.033-0.0330.0000.0000.0000.000
146A454LEU0-0.001-0.00814.664-0.042-0.0420.0000.0000.0000.000
147A455ASN0-0.017-0.02617.105-0.050-0.0500.0000.0000.0000.000
148A456SER0-0.077-0.05312.964-0.021-0.0210.0000.0000.0000.000
149A457GLY00.0430.00716.087-0.019-0.0190.0000.0000.0000.000
150A458VAL00.0550.05618.013-0.021-0.0210.0000.0000.0000.000
151A459TYR0-0.104-0.06220.736-0.020-0.0200.0000.0000.0000.000
152A460THR0-0.007-0.01718.489-0.005-0.0050.0000.0000.0000.000
153A461PHE00.0410.04221.495-0.008-0.0080.0000.0000.0000.000
154A462LEU00.0370.00823.682-0.001-0.0010.0000.0000.0000.000
155A463SER0-0.0150.00025.5760.0060.0060.0000.0000.0000.000
156A464SER0-0.083-0.04428.508-0.005-0.0050.0000.0000.0000.000
157A465THR00.0440.01530.5140.0050.0050.0000.0000.0000.000
158A466LEU00.019-0.00632.2900.0010.0010.0000.0000.0000.000
159A467LYS11.0241.02330.6030.0190.0190.0000.0000.0000.000
160A468SER00.0640.03627.6900.0010.0010.0000.0000.0000.000
161A469LEU0-0.063-0.02129.0790.0070.0070.0000.0000.0000.000
162A470GLU-1-0.873-0.93731.2880.0160.0160.0000.0000.0000.000
163A471GLU-1-0.795-0.91626.2920.0130.0130.0000.0000.0000.000
164A472LYS10.8810.93625.421-0.031-0.0310.0000.0000.0000.000
165A473ASP-1-0.895-0.94227.1400.0560.0560.0000.0000.0000.000
166A474HIS0-0.091-0.02825.9920.0120.0120.0000.0000.0000.000
167A475ILE00.0380.01721.9200.0090.0090.0000.0000.0000.000
168A476HIS00.021-0.00224.5450.0200.0200.0000.0000.0000.000
169A477ARG10.9300.97026.372-0.049-0.0490.0000.0000.0000.000
170A478VAL0-0.038-0.01922.7450.0060.0060.0000.0000.0000.000
171A479LEU0-0.0030.00119.9020.0180.0180.0000.0000.0000.000
172A480ASP-1-0.879-0.92623.4730.1270.1270.0000.0000.0000.000
173A481LYS10.8790.96025.774-0.104-0.1040.0000.0000.0000.000
174A482ILE00.011-0.00419.6330.0080.0080.0000.0000.0000.000
175A483THR00.001-0.00123.0890.0230.0230.0000.0000.0000.000
176A484ASP-1-0.925-0.97024.3530.1290.1290.0000.0000.0000.000
177A485THR0-0.125-0.07823.256-0.006-0.0060.0000.0000.0000.000
178A486LEU00.0290.00519.6460.0060.0060.0000.0000.0000.000
179A487ILE00.0130.01423.5400.0040.0040.0000.0000.0000.000
180A488HIS0-0.077-0.03426.916-0.005-0.0050.0000.0000.0000.000
181A489LEU0-0.009-0.01421.805-0.006-0.0060.0000.0000.0000.000
182A490MET0-0.025-0.00522.758-0.006-0.0060.0000.0000.0000.000
183A491ALA0-0.014-0.00226.763-0.005-0.0050.0000.0000.0000.000
184A492LYS10.8800.96028.358-0.145-0.1450.0000.0000.0000.000
185A493ALA0-0.031-0.01026.811-0.004-0.0040.0000.0000.0000.000
186A494GLY0-0.047-0.03528.9380.0000.0000.0000.0000.0000.000
187A495LEU0-0.0060.00426.1370.0030.0030.0000.0000.0000.000
188A496THR0-0.010-0.00530.821-0.006-0.0060.0000.0000.0000.000
189A497LEU00.0750.02531.8210.0080.0080.0000.0000.0000.000
190A498GLN00.0050.00732.1070.0000.0000.0000.0000.0000.000
191A499GLN0-0.005-0.01429.3030.0080.0080.0000.0000.0000.000
192A500GLN0-0.008-0.00827.7280.0130.0130.0000.0000.0000.000
193A501HIS00.0830.03726.8690.0060.0060.0000.0000.0000.000
194A502GLN0-0.086-0.04126.942-0.003-0.0030.0000.0000.0000.000
195A503ARG10.7680.82420.406-0.319-0.3190.0000.0000.0000.000
196A504LEU00.0420.02522.2900.0260.0260.0000.0000.0000.000
197A505ALA00.0360.02321.8060.0210.0210.0000.0000.0000.000
198A506GLN0-0.076-0.05921.2630.0320.0320.0000.0000.0000.000
199A507LEU0-0.019-0.00317.2820.0350.0350.0000.0000.0000.000
200A508LEU00.0510.01716.9690.0440.0440.0000.0000.0000.000
201A509LEU0-0.021-0.01417.5830.0060.0060.0000.0000.0000.000
202A510ILE0-0.051-0.02012.7620.0060.0060.0000.0000.0000.000
203A511LEU00.0360.01512.9970.0570.0570.0000.0000.0000.000
204A512SER00.0080.01713.059-0.004-0.0040.0000.0000.0000.000
205A513HIS00.0000.00012.215-0.019-0.0190.0000.0000.0000.000
206A514ILE00.0090.0137.9650.0310.0310.0000.0000.0000.000
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