FMODB: The database of quantum mechanical data based on the FMO method
Last updated: 2025-10-17
All entries: 77277
Number of unique PDB entries: 32023
FMODB ID: XQL7Y
Calculation Name: 1L2Y-A-MD49-60900ps
Preferred Name:
Target Type:
Ligand Name:
Ligand 3-letter code:
Ligand of Interest (LOI):
Structure Source: PDB
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Apendix: None
Modeling method
| Optimization | BaseStructure_original |
|---|---|
| Restraint | BaseStructure_original |
| Protonation | BaseStructure_original |
| Complement | No |
| Water | No |
| Procedure | Manual calculation |
| Remarks |
FMO calculation
| FMO method | FMO2-MP2/6-31G(d) |
|---|---|
| Fragmentation | Auto |
| Number of fragment | 10 |
| LigandResidueName | |
| LigandFragmentNumber | 0 |
| LigandCharge | |
| Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
| FMO2-HF: Electronic energy | -23425.308287 |
|---|---|
| FMO2-HF: Nuclear repulsion | 18823.227063 |
| FMO2-HF: Total energy | -4602.081223 |
| FMO2-MP2: Total energy | -4615.508313 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
| IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
|---|---|---|---|---|---|
| IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
| -13.353 | -9.23 | 5.763 | -3.096 | -6.788 | -0.009 |
Interaction energy analysis for fragmet #1(:1:GLN )
| frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3 | 3 | GLN | 0 | 0.090 | 0.030 | 2.966 | -2.117 | 0.785 | 0.342 | -1.346 | -1.899 | -0.008 | |
| 4 | 4 | GLN | 0 | 0.001 | -0.016 | 4.526 | -2.410 | -2.197 | -0.001 | -0.010 | -0.201 | 0.000 | |
| 5 | 5 | GLN | 0 | -0.026 | -0.011 | 2.526 | 4.090 | 4.131 | 3.226 | -0.819 | -2.448 | 0.002 | |
| 6 | 6 | GLN | 0 | -0.001 | 0.010 | 2.208 | -1.236 | -1.002 | 2.153 | -0.747 | -1.640 | -0.003 | |
| 7 | 7 | GLN | 0 | -0.036 | -0.040 | 2.868 | 3.393 | 4.096 | 0.044 | -0.169 | -0.577 | 0.000 | |
| 8 | 8 | GLN | 0 | -0.064 | -0.001 | 4.913 | 2.645 | 2.675 | -0.001 | -0.005 | -0.023 | 0.000 | |
| 9 | 9 | GLN | 0 | 0.002 | -0.013 | 7.619 | 0.588 | 0.588 | 0.000 | 0.000 | 0.000 | 0.000 | |
| 10 | 10 | GLN | -1 | -0.924 | -0.931 | 11.083 | -18.306 | -18.306 | 0.000 | 0.000 | 0.000 | 0.000 |