FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XQN9Y

Calculation Name: 3EOI-A-Xray40

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 3EOI

Chain ID: A

ChEMBL ID:

UniProt ID: Q68JC9

Base Structure: X-ray

Registration Date: 2019-02-15

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 203
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1193276.287694
FMO2-HF: Nuclear repulsion 1139301.341611
FMO2-HF: Total energy -53974.946084
FMO2-MP2: Total energy -54131.463951


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
1.622.628-0.012-0.494-0.502-0.001
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.030 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3SER00.0110.0213.8570.7691.777-0.012-0.494-0.502-0.001
4A4ARG10.9690.9576.8810.6500.6500.0000.0000.0000.000
5A5THR0-0.033-0.0049.9330.1050.1050.0000.0000.0000.000
6A6VAL00.0470.03712.479-0.045-0.0450.0000.0000.0000.000
7A7HIS00.0400.10011.7790.0950.0950.0000.0000.0000.000
8A8HIS0-0.004-0.00416.8790.0100.0100.0000.0000.0000.000
9A9GLN00.0290.01218.8910.0070.0070.0000.0000.0000.000
10A10GLN00.0670.04221.9100.0010.0010.0000.0000.0000.000
11A11THR00.0910.04625.4080.0080.0080.0000.0000.0000.000
12A12ALA00.0160.03724.6740.0070.0070.0000.0000.0000.000
13A13GLU-1-0.784-0.83822.373-0.094-0.0940.0000.0000.0000.000
14A14ILE0-0.011-0.00826.6970.0080.0080.0000.0000.0000.000
15A15THR00.0100.00229.9190.0060.0060.0000.0000.0000.000
16A16GLN0-0.0020.00328.5570.0000.0000.0000.0000.0000.000
17A17GLN0-0.007-0.01330.2900.0060.0060.0000.0000.0000.000
18A18ALA00.0070.00331.7540.0060.0060.0000.0000.0000.000
19A19ALA00.0580.04133.8620.0040.0040.0000.0000.0000.000
20A20ASP-1-0.739-0.85531.475-0.049-0.0490.0000.0000.0000.000
21A21PHE0-0.031-0.01834.9920.0040.0040.0000.0000.0000.000
22A22ILE0-0.010-0.00437.2930.0030.0030.0000.0000.0000.000
23A23ARG10.8820.94033.5760.0470.0470.0000.0000.0000.000
24A24TYR0-0.019-0.04035.3940.0020.0020.0000.0000.0000.000
25A25MET0-0.0220.00140.2680.0030.0030.0000.0000.0000.000
26A26ASN00.016-0.00542.8490.0030.0030.0000.0000.0000.000
27A27ALA00.0330.03142.8450.0020.0020.0000.0000.0000.000
28A28ILE0-0.018-0.01842.0420.0020.0020.0000.0000.0000.000
29A29ASN00.0250.01145.8670.0030.0030.0000.0000.0000.000
30A30ASP-1-0.862-0.93148.060-0.022-0.0220.0000.0000.0000.000
31A31TYR0-0.048-0.03748.2140.0010.0010.0000.0000.0000.000
32A32LEU0-0.005-0.03749.0130.0010.0010.0000.0000.0000.000
33A33TYR0-0.0300.00951.9440.0010.0010.0000.0000.0000.000
34A34GLN0-0.015-0.00651.5380.0010.0010.0000.0000.0000.000
35A35HIS10.8300.94152.7810.0130.0130.0000.0000.0000.000
36A36PRO00.0800.04354.8560.0000.0000.0000.0000.0000.000
37A37GLU-1-0.845-0.93056.429-0.009-0.0090.0000.0000.0000.000
38A38ARG10.7780.89648.3450.0100.0100.0000.0000.0000.000
39A39ARG10.7710.86352.1150.0140.0140.0000.0000.0000.000
40A40ALA00.0090.00553.5030.0000.0000.0000.0000.0000.000
41A41ALA0-0.0020.01052.9480.0010.0010.0000.0000.0000.000
42A42GLY0-0.0330.00350.4340.0010.0010.0000.0000.0000.000
43A43GLY00.0160.01446.4370.0000.0000.0000.0000.0000.000
44A44GLN0-0.013-0.03941.5830.0000.0000.0000.0000.0000.000
45A45LEU0-0.0050.00744.8180.0010.0010.0000.0000.0000.000
46A46THR0-0.012-0.02443.007-0.001-0.0010.0000.0000.0000.000
47A47SER00.033-0.00338.642-0.001-0.0010.0000.0000.0000.000
48A48ALA0-0.022-0.01141.165-0.001-0.0010.0000.0000.0000.000
49A49GLN00.0180.03644.011-0.001-0.0010.0000.0000.0000.000
50A50LEU0-0.0020.00041.203-0.001-0.0010.0000.0000.0000.000
51A51GLY00.0440.04042.452-0.002-0.0020.0000.0000.0000.000
52A52LEU0-0.038-0.00737.752-0.003-0.0030.0000.0000.0000.000
53A53PRO00.0160.01734.0460.0030.0030.0000.0000.0000.000
54A54ALA00.0390.02133.456-0.001-0.0010.0000.0000.0000.000
55A55THR00.0550.05032.147-0.005-0.0050.0000.0000.0000.000
56A56LYS10.9060.94527.2330.0270.0270.0000.0000.0000.000
57A57ASN0-0.019-0.02529.4650.0060.0060.0000.0000.0000.000
58A58VAL00.0650.05931.433-0.001-0.0010.0000.0000.0000.000
59A59SER0-0.030-0.01035.2610.0030.0030.0000.0000.0000.000
60A60HIS00.0520.01237.7260.0000.0000.0000.0000.0000.000
61A61LEU00.0090.02041.4740.0020.0020.0000.0000.0000.000
62A62ILE00.0070.03644.473-0.001-0.0010.0000.0000.0000.000
63A63SER00.0050.00648.1960.0020.0020.0000.0000.0000.000
64A64GLN0-0.015-0.00550.2170.0000.0000.0000.0000.0000.000
65A65GLN0-0.013-0.01753.425-0.001-0.0010.0000.0000.0000.000
66A66ARG10.9420.97650.9640.0100.0100.0000.0000.0000.000
67A67VAL00.0160.00545.8990.0010.0010.0000.0000.0000.000
68A68PHE0-0.030-0.00944.214-0.001-0.0010.0000.0000.0000.000
69A69VAL00.0180.00140.1520.0010.0010.0000.0000.0000.000
70A70TRP00.000-0.02136.958-0.001-0.0010.0000.0000.0000.000
71A71ALA00.0110.00333.9370.0000.0000.0000.0000.0000.000
72A72LYS10.9450.98326.8070.0350.0350.0000.0000.0000.000
73A73GLU-1-0.820-0.86732.857-0.033-0.0330.0000.0000.0000.000
74A74LYS10.9040.95427.0210.0510.0510.0000.0000.0000.000
75A75PRO00.0820.04230.1030.0030.0030.0000.0000.0000.000
76A76GLY00.0740.02932.193-0.005-0.0050.0000.0000.0000.000
77A77LEU0-0.0130.00832.985-0.001-0.0010.0000.0000.0000.000
78A78MET00.0230.00634.8110.0010.0010.0000.0000.0000.000
79A79GLY00.0550.03337.9590.0010.0010.0000.0000.0000.000
80A80ALA00.0530.03534.9010.0000.0000.0000.0000.0000.000
81A81LEU0-0.035-0.01036.9550.0010.0010.0000.0000.0000.000
82A82LEU0-0.020-0.00539.1540.0010.0010.0000.0000.0000.000
83A83GLU-1-0.796-0.87537.497-0.055-0.0550.0000.0000.0000.000
84A84GLN0-0.067-0.03534.5850.0030.0030.0000.0000.0000.000
85A85SER0-0.0110.00140.3570.0020.0020.0000.0000.0000.000
86A86GLY00.0440.04243.7190.0020.0020.0000.0000.0000.000
87A87ASP-1-0.845-0.88044.791-0.034-0.0340.0000.0000.0000.000
88A88SER0-0.056-0.02646.3750.0020.0020.0000.0000.0000.000
89A89ALA00.0160.01244.0810.0020.0020.0000.0000.0000.000
90A90LEU00.0250.01646.1450.0000.0000.0000.0000.0000.000
91A91LEU0-0.0140.00241.3820.0010.0010.0000.0000.0000.000
92A92ALA00.0390.02544.0510.0010.0010.0000.0000.0000.000
93A93ARG10.9010.93640.6660.0210.0210.0000.0000.0000.000
94A94VAL0-0.0020.01141.0020.0020.0020.0000.0000.0000.000
95A95GLU-1-0.863-0.93540.425-0.019-0.0190.0000.0000.0000.000
96A96ASN0-0.060-0.03541.2540.0000.0000.0000.0000.0000.000
97A97GLY00.0480.02642.7360.0010.0010.0000.0000.0000.000
98A98ARG10.8150.90244.5750.0080.0080.0000.0000.0000.000
99A99LEU00.0270.02045.273-0.001-0.0010.0000.0000.0000.000
100A100LEU0-0.024-0.01144.2590.0010.0010.0000.0000.0000.000
101A101ASP-1-0.696-0.86346.295-0.019-0.0190.0000.0000.0000.000
102A102THR0-0.024-0.03144.3270.0000.0000.0000.0000.0000.000
103A103HIS0-0.044-0.01245.599-0.001-0.0010.0000.0000.0000.000
104A104GLY0-0.047-0.02146.3450.0010.0010.0000.0000.0000.000
105A105ARG10.8740.94647.1960.0180.0180.0000.0000.0000.000
106A106ARG10.9340.96450.0230.0090.0090.0000.0000.0000.000
107A107ILE00.0620.03649.3910.0000.0000.0000.0000.0000.000
108A108SER0-0.066-0.04451.6520.0010.0010.0000.0000.0000.000
109A109ILE00.0040.01450.6200.0010.0010.0000.0000.0000.000
110A110THR0-0.021-0.01051.0840.0000.0000.0000.0000.0000.000
111A111LEU00.0230.01244.9100.0000.0000.0000.0000.0000.000
112A112PRO00.0110.02145.5720.0010.0010.0000.0000.0000.000
113A113ALA00.0520.03045.224-0.001-0.0010.0000.0000.0000.000
114A114VAL0-0.021-0.00441.5100.0000.0000.0000.0000.0000.000
115A115ILE0-0.0120.01440.450-0.001-0.0010.0000.0000.0000.000
116A116PRO00.0410.04536.3880.0010.0010.0000.0000.0000.000
117A117ASP-1-0.693-0.81738.115-0.011-0.0110.0000.0000.0000.000
118A118GLN0-0.046-0.02034.078-0.001-0.0010.0000.0000.0000.000
119A119VAL0-0.0290.00435.351-0.003-0.0030.0000.0000.0000.000
120A120ILE00.0120.01236.8610.0010.0010.0000.0000.0000.000
121A121ILE0-0.052-0.04239.1850.0000.0000.0000.0000.0000.000
122A122TRP00.0180.01041.9640.0000.0000.0000.0000.0000.000
123A123MET0-0.054-0.03844.6170.0010.0010.0000.0000.0000.000
124A124ASN-1-0.757-0.84947.687-0.015-0.0150.0000.0000.0000.000
125B127HOH0-0.024-0.02249.5050.0000.0000.0000.0000.0000.000
126B129HOH0-0.0160.00145.4700.0000.0000.0000.0000.0000.000
127B132HOH0-0.036-0.02451.3340.0000.0000.0000.0000.0000.000
128B133HOH0-0.037-0.02246.5790.0000.0000.0000.0000.0000.000
129B139HOH0-0.018-0.00935.774-0.001-0.0010.0000.0000.0000.000
130B141HOH0-0.006-0.01037.6510.0010.0010.0000.0000.0000.000
131B143HOH00.0060.01538.0790.0010.0010.0000.0000.0000.000
132B145HOH00.0130.00346.1840.0000.0000.0000.0000.0000.000
133B152HOH0-0.029-0.01634.8390.0010.0010.0000.0000.0000.000
134B153HOH00.0290.01852.1100.0000.0000.0000.0000.0000.000
135B154HOH0-0.030-0.05138.261-0.001-0.0010.0000.0000.0000.000
136B157HOH00.000-0.00354.7880.0000.0000.0000.0000.0000.000
137B162HOH00.0060.00332.6490.0020.0020.0000.0000.0000.000
138B165HOH0-0.020-0.02242.226-0.001-0.0010.0000.0000.0000.000
139B167HOH0-0.001-0.00552.9710.0000.0000.0000.0000.0000.000
140B169HOH0-0.035-0.02342.2100.0000.0000.0000.0000.0000.000
141B174HOH0-0.026-0.03237.8710.0000.0000.0000.0000.0000.000
142B176HOH0-0.051-0.03347.5450.0000.0000.0000.0000.0000.000
143B182HOH0-0.028-0.02326.8050.0030.0030.0000.0000.0000.000
144B184HOH0-0.025-0.01937.345-0.001-0.0010.0000.0000.0000.000
145B189HOH00.0450.03414.4450.0130.0130.0000.0000.0000.000
146B192HOH0-0.059-0.04930.853-0.001-0.0010.0000.0000.0000.000
147B195HOH0-0.0030.00354.5440.0000.0000.0000.0000.0000.000
148B201HOH00.0420.03053.3690.0000.0000.0000.0000.0000.000
149B205HOH00.0180.01239.7020.0000.0000.0000.0000.0000.000
150B208HOH0-0.045-0.03139.7380.0000.0000.0000.0000.0000.000
151B209HOH0-0.028-0.02050.5150.0000.0000.0000.0000.0000.000
152B210HOH0-0.075-0.07217.5050.0070.0070.0000.0000.0000.000
153B211HOH00.0080.01235.841-0.001-0.0010.0000.0000.0000.000
154B221HOH0-0.003-0.01148.0070.0000.0000.0000.0000.0000.000
155B222HOH00.0050.00734.5150.0000.0000.0000.0000.0000.000
156B226HOH00.0190.01335.662-0.001-0.0010.0000.0000.0000.000
157B228HOH0-0.026-0.08215.479-0.001-0.0010.0000.0000.0000.000
158B230HOH0-0.064-0.04034.0160.0010.0010.0000.0000.0000.000
159B239HOH00.0290.01747.3140.0000.0000.0000.0000.0000.000
160B242HOH00.0150.00751.7420.0000.0000.0000.0000.0000.000
161B244HOH00.0120.01542.6590.0000.0000.0000.0000.0000.000
162B245HOH0-0.037-0.02352.2740.0000.0000.0000.0000.0000.000
163B249HOH00.003-0.00449.6940.0000.0000.0000.0000.0000.000
164B251HOH0-0.033-0.03548.9670.0000.0000.0000.0000.0000.000
165B253HOH00.0210.01728.762-0.002-0.0020.0000.0000.0000.000
166B257HOH00.0120.02936.6000.0000.0000.0000.0000.0000.000
167B259HOH00.006-0.01729.3420.0000.0000.0000.0000.0000.000
168B261HOH00.0100.00247.6180.0000.0000.0000.0000.0000.000
169B263HOH0-0.050-0.03941.3670.0000.0000.0000.0000.0000.000
170B291HOH0-0.022-0.02633.168-0.001-0.0010.0000.0000.0000.000
171B292HOH0-0.028-0.01929.2420.0000.0000.0000.0000.0000.000
172B295HOH0-0.063-0.04920.7330.0050.0050.0000.0000.0000.000
173B298HOH0-0.021-0.02031.8510.0000.0000.0000.0000.0000.000
174B305HOH0-0.032-0.02230.9420.0010.0010.0000.0000.0000.000
175B307HOH0-0.033-0.03225.8310.0040.0040.0000.0000.0000.000
176B310HOH0-0.036-0.04123.1670.0050.0050.0000.0000.0000.000
177B313HOH00.0370.05941.7070.0010.0010.0000.0000.0000.000
178B317HOH0-0.033-0.02422.8590.0010.0010.0000.0000.0000.000
179B331HOH00.0160.00451.6890.0000.0000.0000.0000.0000.000
180B336HOH00.0340.02224.6440.0020.0020.0000.0000.0000.000
181B344HOH0-0.039-0.02435.269-0.001-0.0010.0000.0000.0000.000
182B352HOH00.0010.02239.8310.0000.0000.0000.0000.0000.000
183B367HOH0-0.129-0.14941.1080.0000.0000.0000.0000.0000.000
184B372HOH00.0190.00855.4790.0000.0000.0000.0000.0000.000
185B381HOH0-0.047-0.03531.8740.0010.0010.0000.0000.0000.000
186B385HOH0-0.033-0.02749.3480.0010.0010.0000.0000.0000.000
187B389HOH0-0.060-0.04829.646-0.001-0.0010.0000.0000.0000.000
188B420HOH0-0.021-0.01639.3570.0000.0000.0000.0000.0000.000
189B431HOH0-0.032-0.02249.2290.0000.0000.0000.0000.0000.000
190B433HOH0-0.004-0.01047.3420.0000.0000.0000.0000.0000.000
191B439HOH00.007-0.00151.5900.0000.0000.0000.0000.0000.000
192B442HOH0-0.026-0.02046.0910.0000.0000.0000.0000.0000.000
193B445HOH0-0.029-0.01941.4210.0010.0010.0000.0000.0000.000
194B449HOH0-0.052-0.03540.6270.0000.0000.0000.0000.0000.000
195B450HOH0-0.023-0.02543.1720.0000.0000.0000.0000.0000.000
196B451HOH00.0100.00944.7080.0000.0000.0000.0000.0000.000
197B456HOH0-0.031-0.03756.1390.0000.0000.0000.0000.0000.000
198B461HOH0-0.014-0.01148.5120.0000.0000.0000.0000.0000.000
199B463HOH00.0380.01939.369-0.001-0.0010.0000.0000.0000.000
200B465HOH00.0120.00751.3770.0000.0000.0000.0000.0000.000
201B468HOH0-0.059-0.07943.605-0.001-0.0010.0000.0000.0000.000
202B470HOH0-0.014-0.01247.7310.0000.0000.0000.0000.0000.000
203B471HOH0-0.0010.00731.6120.0010.0010.0000.0000.0000.000