Manual

About

FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XQNKY

Calculation Name: 1IQ6-A-Xray30

Preferred Name:

Target Type:

Ligand Name: isopropyl alcohol

ligand 3-letter code: IPA

PDB ID: 1IQ6

Chain ID: A

ChEMBL ID:

UniProt ID: O32472

Base Structure: X-ray

Registration Date: 2018-09-06

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 234
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1261555.579939
FMO2-HF: Nuclear repulsion 1206023.2991
FMO2-HF: Total energy -55532.280839
FMO2-MP2: Total energy -55695.001705


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
8.4790.9216.2983.919-2.659-0.02
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.047 / q_NPA : 0.017
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3GLN0-0.120-0.0613.8531.4672.177-0.006-0.268-0.4370.000
4A4SER00.0330.0125.2660.1600.1600.0000.0000.0000.000
5A5LEU0-0.044-0.0036.6420.2690.2690.0000.0000.0000.000
6A6GLU-1-0.909-0.9684.529-0.441-0.486-0.001-0.0290.0750.000
7A7VAL0-0.025-0.0275.146-0.066-0.0660.0000.0000.0000.000
8A8GLY00.0390.0257.4280.0890.0890.0000.0000.0000.000
9A9GLN0-0.0010.0019.002-0.133-0.1330.0000.0000.0000.000
10A10LYS10.8120.90311.479-0.041-0.0410.0000.0000.0000.000
11A11ALA00.0120.01614.959-0.006-0.0060.0000.0000.0000.000
12A12ARG10.8760.92317.6780.0440.0440.0000.0000.0000.000
13A13LEU0-0.0220.00121.300-0.003-0.0030.0000.0000.0000.000
14A14SER00.010-0.00524.7520.0060.0060.0000.0000.0000.000
15A15LYS10.8900.95228.2830.0680.0680.0000.0000.0000.000
16A16ARG10.8880.93331.0780.0330.0330.0000.0000.0000.000
17A17PHE00.0030.01130.278-0.001-0.0010.0000.0000.0000.000
18A18GLY00.0390.01335.6480.0040.0040.0000.0000.0000.000
19A19ALA00.0440.00139.313-0.002-0.0020.0000.0000.0000.000
20A20ALA00.0440.03441.450-0.001-0.0010.0000.0000.0000.000
21A21GLU-1-0.740-0.85335.574-0.055-0.0550.0000.0000.0000.000
22A22VAL00.0050.01037.283-0.003-0.0030.0000.0000.0000.000
23A23ALA00.0330.01938.499-0.001-0.0010.0000.0000.0000.000
24A24ALA00.0110.01537.975-0.001-0.0010.0000.0000.0000.000
25A25PHE00.0540.01131.895-0.003-0.0030.0000.0000.0000.000
26A26ALA0-0.0120.00736.677-0.002-0.0020.0000.0000.0000.000
27A27ALA00.0060.00839.4690.0000.0000.0000.0000.0000.000
28A28LEU0-0.061-0.01734.183-0.001-0.0010.0000.0000.0000.000
29A29SER0-0.060-0.04235.135-0.001-0.0010.0000.0000.0000.000
30A30GLU-1-0.796-0.88536.597-0.049-0.0490.0000.0000.0000.000
31A31ASP-1-0.801-0.87337.924-0.042-0.0420.0000.0000.0000.000
32A32PHE00.0530.01739.9500.0000.0000.0000.0000.0000.000
33A33ASN00.0240.03841.3680.0040.0040.0000.0000.0000.000
34A34PRO00.0920.04543.347-0.001-0.0010.0000.0000.0000.000
35A35LEU0-0.0150.00841.2580.0010.0010.0000.0000.0000.000
36A36HIS10.7640.87337.7290.0410.0410.0000.0000.0000.000
37A37LEU0-0.016-0.00741.500-0.001-0.0010.0000.0000.0000.000
38A38ASP-1-0.755-0.81044.318-0.024-0.0240.0000.0000.0000.000
39A39PRO00.023-0.00947.0050.0010.0010.0000.0000.0000.000
40A40ALA00.0480.03648.4400.0010.0010.0000.0000.0000.000
41A41PHE00.0410.01546.3810.0010.0010.0000.0000.0000.000
42A42ALA00.0210.02345.6510.0010.0010.0000.0000.0000.000
43A43ALA00.0240.04147.3230.0010.0010.0000.0000.0000.000
44A44THR0-0.082-0.04450.0330.0010.0010.0000.0000.0000.000
45A45THR0-0.069-0.04246.1440.0000.0000.0000.0000.0000.000
46A46ALA00.046-0.00145.0250.0000.0000.0000.0000.0000.000
47A47PHE00.0020.00739.2490.0000.0000.0000.0000.0000.000
48A48GLU-1-0.861-0.89643.883-0.014-0.0140.0000.0000.0000.000
49A49ARG10.9360.97441.8940.0210.0210.0000.0000.0000.000
50A50PRO00.0110.01042.830-0.001-0.0010.0000.0000.0000.000
51A51ILE00.0090.02037.7930.0000.0000.0000.0000.0000.000
52A52VAL00.0220.01033.713-0.001-0.0010.0000.0000.0000.000
53A53HIS0-0.0390.00734.4670.0000.0000.0000.0000.0000.000
54A54GLY00.0850.02731.810-0.003-0.0030.0000.0000.0000.000
55A55MET00.020-0.01927.694-0.004-0.0040.0000.0000.0000.000
56A56LEU0-0.0080.02929.547-0.007-0.0070.0000.0000.0000.000
57A57LEU0-0.0060.00028.971-0.005-0.0050.0000.0000.0000.000
58A58ALA00.015-0.00225.629-0.005-0.0050.0000.0000.0000.000
59A59SER0-0.047-0.02024.814-0.013-0.0130.0000.0000.0000.000
60A60LEU0-0.005-0.00725.228-0.011-0.0110.0000.0000.0000.000
61A61PHE00.0160.00820.583-0.007-0.0070.0000.0000.0000.000
62A62SER00.0510.03820.418-0.022-0.0220.0000.0000.0000.000
63A63GLY0-0.0100.00321.692-0.013-0.0130.0000.0000.0000.000
64A64LEU0-0.028-0.01018.958-0.009-0.0090.0000.0000.0000.000
65A65LEU00.0320.01215.305-0.019-0.0190.0000.0000.0000.000
66A66GLY00.0050.01717.277-0.033-0.0330.0000.0000.0000.000
67A67GLN0-0.110-0.07119.9350.0180.0180.0000.0000.0000.000
68A68GLN0-0.060-0.00417.8580.0130.0130.0000.0000.0000.000
69A69LEU00.0250.03511.989-0.027-0.0270.0000.0000.0000.000
70A70PRO00.020-0.00511.5330.0290.0290.0000.0000.0000.000
71A71GLY00.0420.04113.3890.0040.0040.0000.0000.0000.000
72A72LYS10.9810.98416.8820.1900.1900.0000.0000.0000.000
73A73GLY00.0440.02817.400-0.028-0.0280.0000.0000.0000.000
74A74SER00.0200.01015.148-0.047-0.0470.0000.0000.0000.000
75A75ILE0-0.034-0.00916.2160.0540.0540.0000.0000.0000.000
76A76TYR0-0.015-0.03016.765-0.035-0.0350.0000.0000.0000.000
77A77LEU0-0.052-0.01314.3710.0100.0100.0000.0000.0000.000
78A78GLY00.0200.00617.8230.0290.0290.0000.0000.0000.000
79A79GLN00.0440.01718.412-0.036-0.0360.0000.0000.0000.000
80A80SER0-0.0220.00420.4080.0110.0110.0000.0000.0000.000
81A81LEU0-0.014-0.01922.287-0.003-0.0030.0000.0000.0000.000
82A82SER00.0100.00225.0120.0080.0080.0000.0000.0000.000
83A83PHE0-0.020-0.02027.2240.0000.0000.0000.0000.0000.000
84A84LYS10.9060.96227.3660.0310.0310.0000.0000.0000.000
85A85LEU00.0050.00831.3490.0040.0040.0000.0000.0000.000
86A86PRO0-0.0170.01433.210-0.004-0.0040.0000.0000.0000.000
87A87VAL00.0480.02431.9440.0020.0020.0000.0000.0000.000
88A88PHE0-0.027-0.00735.310-0.002-0.0020.0000.0000.0000.000
89A89VAL0-0.029-0.00937.899-0.001-0.0010.0000.0000.0000.000
90A90GLY00.0300.03138.5290.0030.0030.0000.0000.0000.000
91A91ASP-1-0.807-0.87436.423-0.024-0.0240.0000.0000.0000.000
92A92GLU-1-0.982-1.00731.784-0.040-0.0400.0000.0000.0000.000
93A93VAL0-0.0210.00028.8390.0030.0030.0000.0000.0000.000
94A94THR00.0100.01124.8610.0000.0000.0000.0000.0000.000
95A95ALA00.0010.00823.5390.0030.0030.0000.0000.0000.000
96A96GLU-1-0.748-0.88818.632-0.038-0.0380.0000.0000.0000.000
97A97VAL0-0.0100.00315.6520.0030.0030.0000.0000.0000.000
98A98GLU-1-0.748-0.88013.0590.0240.0240.0000.0000.0000.000
99A99VAL00.0130.0197.4190.0010.0010.0000.0000.0000.000
100A100THR00.0030.01410.1970.0920.0920.0000.0000.0000.000
101A101ALA00.0360.0186.8200.1580.1580.0000.0000.0000.000
102A102LEU00.0490.0462.3081.186-0.3022.1680.097-0.777-0.001
103A103ARG10.8040.9234.9510.6290.747-0.001-0.004-0.1120.000
104A104GLU-1-0.896-0.9505.2440.0620.0620.0000.0000.0000.000
105A105ASP-1-0.804-0.8926.228-0.352-0.3520.0000.0000.0000.000
106A106LYS10.8290.8938.5180.4060.4060.0000.0000.0000.000
107A107PRO00.0560.0528.240-0.217-0.2170.0000.0000.0000.000
108A108ILE0-0.033-0.0268.4630.1900.1900.0000.0000.0000.000
109A109ALA00.0400.0287.814-0.240-0.2400.0000.0000.0000.000
110A110THR00.004-0.0019.0500.1490.1490.0000.0000.0000.000
111A111LEU0-0.026-0.01610.5530.0010.0010.0000.0000.0000.000
112A112THR00.0000.02213.1540.0310.0310.0000.0000.0000.000
113A113THR0-0.033-0.01816.201-0.012-0.0120.0000.0000.0000.000
114A114ARG10.8430.90719.2050.0400.0400.0000.0000.0000.000
115A115ILE00.0310.02322.290-0.005-0.0050.0000.0000.0000.000
116A116PHE0-0.031-0.01822.9370.0060.0060.0000.0000.0000.000
117A117THR00.0570.00827.970-0.003-0.0030.0000.0000.0000.000
118A118GLN00.0980.04831.3310.0000.0000.0000.0000.0000.000
119A119GLY0-0.0220.00433.7570.0020.0020.0000.0000.0000.000
120A120GLY00.0190.01029.9860.0040.0040.0000.0000.0000.000
121A121ALA0-0.0100.01529.5060.0030.0030.0000.0000.0000.000
122A122LEU00.0020.00024.313-0.005-0.0050.0000.0000.0000.000
123A123ALA00.0480.02328.1970.0020.0020.0000.0000.0000.000
124A124VAL0-0.011-0.00425.1950.0000.0000.0000.0000.0000.000
125A125THR00.000-0.01922.528-0.003-0.0030.0000.0000.0000.000
126A126GLY00.0180.00621.1940.0020.0020.0000.0000.0000.000
127A127GLU-1-0.778-0.83315.567-0.086-0.0860.0000.0000.0000.000
128A128ALA0-0.0070.01316.0700.0080.0080.0000.0000.0000.000
129A129VAL00.0260.01812.906-0.026-0.0260.0000.0000.0000.000
130A130VAL00.014-0.00812.4730.0440.0440.0000.0000.0000.000
131A131LYS10.9370.97112.1530.2840.2840.0000.0000.0000.000
132A132LEU0-0.005-0.0117.3070.0680.0680.0000.0000.0000.000
133A133PRO-1-0.782-0.81611.917-0.520-0.5200.0000.0000.0000.000
134A201IPA0-0.024-0.0029.5710.0050.0050.0000.0000.0000.000
135A301HOH0-0.016-0.01823.778-0.004-0.0040.0000.0000.0000.000
136A304HOH0-0.007-0.01019.9110.0030.0030.0000.0000.0000.000
137A307HOH0-0.008-0.00334.262-0.002-0.0020.0000.0000.0000.000
138A308HOH00.004-0.00434.3610.0010.0010.0000.0000.0000.000
139A313HOH0-0.020-0.04113.400-0.005-0.0050.0000.0000.0000.000
140A315HOH0-0.030-0.02741.9600.0010.0010.0000.0000.0000.000
141A318HOH0-0.026-0.01836.2170.0010.0010.0000.0000.0000.000
142A319HOH00.000-0.00836.593-0.001-0.0010.0000.0000.0000.000
143A320HOH0-0.059-0.03941.7390.0010.0010.0000.0000.0000.000
144A321HOH00.0190.0084.618-0.241-0.237-0.001-0.001-0.0020.000
145A323HOH0-0.026-0.02910.3720.0230.0230.0000.0000.0000.000
146A325HOH00.0100.00634.0040.0010.0010.0000.0000.0000.000
147A327HOH0-0.042-0.02711.4500.0240.0240.0000.0000.0000.000
148A328HOH00.009-0.00232.756-0.001-0.0010.0000.0000.0000.000
149A330HOH0-0.040-0.02615.3320.0170.0170.0000.0000.0000.000
150A331HOH0-0.004-0.00439.0640.0000.0000.0000.0000.0000.000
151A333HOH0-0.025-0.01518.5760.0040.0040.0000.0000.0000.000
152A337HOH0-0.020-0.02948.1200.0000.0000.0000.0000.0000.000
153A338HOH0-0.031-0.02711.7060.0080.0080.0000.0000.0000.000
154A342HOH0-0.026-0.02330.0430.0010.0010.0000.0000.0000.000
155A345HOH00.0110.0168.6250.0220.0220.0000.0000.0000.000
156A346HOH0-0.012-0.01218.2470.0040.0040.0000.0000.0000.000
157A347HOH0-0.018-0.01046.5040.0000.0000.0000.0000.0000.000
158A348HOH00.0330.01042.2620.0000.0000.0000.0000.0000.000
159A349HOH00.0130.00922.1470.0020.0020.0000.0000.0000.000
160A350HOH0-0.047-0.03715.4120.0140.0140.0000.0000.0000.000
161A354HOH00.0310.02125.810-0.001-0.0010.0000.0000.0000.000
162A355HOH0-0.030-0.03144.7230.0000.0000.0000.0000.0000.000
163A356HOH0-0.061-0.03746.3340.0000.0000.0000.0000.0000.000
164A357HOH0-0.023-0.02338.8600.0010.0010.0000.0000.0000.000
165A358HOH0-0.032-0.02242.6530.0000.0000.0000.0000.0000.000
166A360HOH0-0.040-0.03027.7930.0000.0000.0000.0000.0000.000
167A364HOH0-0.011-0.01327.336-0.001-0.0010.0000.0000.0000.000
168A369HOH00.0160.01233.8710.0000.0000.0000.0000.0000.000
169A371HOH0-0.070-0.04444.1290.0010.0010.0000.0000.0000.000
170A372HOH0-0.0060.00519.6960.0060.0060.0000.0000.0000.000
171A373HOH0-0.038-0.02941.8800.0010.0010.0000.0000.0000.000
172A376HOH00.0260.01729.684-0.002-0.0020.0000.0000.0000.000
173A379HOH0-0.039-0.02810.1870.0190.0190.0000.0000.0000.000
174A380HOH0-0.015-0.01613.1730.0100.0100.0000.0000.0000.000
175A387HOH0-0.022-0.01320.4120.0030.0030.0000.0000.0000.000
176A390HOH0-0.084-0.0832.4686.731-0.7343.8054.648-0.988-0.014
177A393HOH00.000-0.01534.7080.0000.0000.0000.0000.0000.000
178A394HOH00.0270.01626.8860.0000.0000.0000.0000.0000.000
179A395HOH0-0.031-0.01720.125-0.001-0.0010.0000.0000.0000.000
180A397HOH00.005-0.0037.6690.0460.0460.0000.0000.0000.000
181A399HOH0-0.024-0.01520.525-0.002-0.0020.0000.0000.0000.000
182A401HOH0-0.037-0.02917.319-0.001-0.0010.0000.0000.0000.000
183A404HOH0-0.043-0.03241.3790.0010.0010.0000.0000.0000.000
184A405HOH0-0.054-0.05235.005-0.001-0.0010.0000.0000.0000.000
185A406HOH0-0.042-0.03153.2630.0000.0000.0000.0000.0000.000
186A407HOH0-0.024-0.02114.2090.0010.0010.0000.0000.0000.000
187A413HOH0-0.028-0.02442.6230.0000.0000.0000.0000.0000.000
188A415HOH00.0330.02034.991-0.001-0.0010.0000.0000.0000.000
189A419HOH0-0.023-0.01318.250-0.003-0.0030.0000.0000.0000.000
190A425HOH0-0.040-0.02129.6220.0010.0010.0000.0000.0000.000
191A426HOH00.0300.01942.739-0.001-0.0010.0000.0000.0000.000
192A427HOH0-0.023-0.0235.533-0.305-0.3050.0000.0000.0000.000
193A428HOH0-0.043-0.03221.2180.0070.0070.0000.0000.0000.000
194A429HOH0-0.022-0.02115.7160.0080.0080.0000.0000.0000.000
195A430HOH0-0.037-0.01317.329-0.005-0.0050.0000.0000.0000.000
196A432HOH0-0.055-0.04140.7910.0010.0010.0000.0000.0000.000
197A433HOH0-0.055-0.05052.2690.0000.0000.0000.0000.0000.000
198A434HOH0-0.032-0.01531.6930.0000.0000.0000.0000.0000.000
199A438HOH0-0.022-0.00519.020-0.003-0.0030.0000.0000.0000.000
200A440HOH00.0070.0237.062-0.009-0.0090.0000.0000.0000.000
201A441HOH00.0190.01441.786-0.001-0.0010.0000.0000.0000.000
202A443HOH00.0120.01422.9620.0030.0030.0000.0000.0000.000
203A446HOH0-0.032-0.01937.6420.0010.0010.0000.0000.0000.000
204A453HOH0-0.044-0.05350.323-0.001-0.0010.0000.0000.0000.000
205A454HOH00.0130.0082.900-0.832-0.2240.334-0.524-0.418-0.005
206A455HOH00.0440.03521.746-0.003-0.0030.0000.0000.0000.000
207A459HOH0-0.030-0.02229.228-0.003-0.0030.0000.0000.0000.000
208A469HOH00.0230.01613.510-0.007-0.0070.0000.0000.0000.000
209A471HOH00.0040.00438.8550.0000.0000.0000.0000.0000.000
210A476HOH0-0.026-0.02330.755-0.001-0.0010.0000.0000.0000.000
211A477HOH0-0.041-0.02549.0250.0000.0000.0000.0000.0000.000
212A478HOH0-0.029-0.01540.675-0.001-0.0010.0000.0000.0000.000
213A483HOH0-0.042-0.03416.8370.0120.0120.0000.0000.0000.000
214A484HOH0-0.031-0.03229.8380.0010.0010.0000.0000.0000.000
215A486HOH0-0.021-0.02541.2380.0000.0000.0000.0000.0000.000
216A489HOH0-0.031-0.0216.2580.0160.0160.0000.0000.0000.000
217A492HOH00.0350.0218.258-0.071-0.0710.0000.0000.0000.000
218A520HOH0-0.014-0.0098.473-0.156-0.1560.0000.0000.0000.000
219A530HOH0-0.056-0.04644.7750.0000.0000.0000.0000.0000.000
220A538HOH0-0.034-0.02313.569-0.001-0.0010.0000.0000.0000.000
221A539HOH00.0090.01936.317-0.001-0.0010.0000.0000.0000.000
222A545HOH0-0.006-0.00650.5370.0000.0000.0000.0000.0000.000
223A580HOH00.0240.01636.713-0.001-0.0010.0000.0000.0000.000
224A582HOH0-0.012-0.01243.7530.0000.0000.0000.0000.0000.000
225A588HOH0-0.037-0.03146.339-0.001-0.0010.0000.0000.0000.000
226A589HOH0-0.048-0.03212.982-0.015-0.0150.0000.0000.0000.000
227A597HOH0-0.025-0.01752.0500.0000.0000.0000.0000.0000.000
228A598HOH00.0330.02646.8810.0000.0000.0000.0000.0000.000
229A625HOH0-0.016-0.01152.2920.0000.0000.0000.0000.0000.000
230A634HOH0-0.019-0.01728.4170.0000.0000.0000.0000.0000.000
231A644HOH00.034-0.02810.872-0.034-0.0340.0000.0000.0000.000
232A645HOH00.0080.00412.391-0.024-0.0240.0000.0000.0000.000
233B303HOH00.0100.00733.802-0.001-0.0010.0000.0000.0000.000
234B460HOH0-0.035-0.02231.3070.0000.0000.0000.0000.0000.000