FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

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FMODB ID: XQNLY

Calculation Name: 1X91-A-Xray31

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 1X91

Chain ID: A

ChEMBL ID:

UniProt ID: Q9LNF2

Base Structure: X-ray

Registration Date: 2018-09-06

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water Apo structure with with a 3 angstrom solvent shell.
Procedure Auto-FMO protocol ver. 1.20180227
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 231
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1534857.052543
FMO2-HF: Nuclear repulsion 1470303.694034
FMO2-HF: Total energy -64553.35851
FMO2-MP2: Total energy -64733.119872


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:0:ACE)


Summations of interaction energy for fragment #1(A:0:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.7681.658-0.011-0.407-0.471-0.001
Interaction energy analysis for fragmet #1(A:0:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.027 / q_NPA : 0.004
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A2SER0-0.0170.0013.8480.8011.691-0.011-0.407-0.471-0.001
4A3GLU-1-0.806-0.9106.780-0.434-0.4340.0000.0000.0000.000
5A4MET0-0.031-0.0059.897-0.005-0.0050.0000.0000.0000.000
6A5SER0-0.088-0.0578.030-0.044-0.0440.0000.0000.0000.000
7A6THR0-0.004-0.0039.1380.1030.1030.0000.0000.0000.000
8A7ILE00.0310.02211.8040.0870.0870.0000.0000.0000.000
9A17CYS00.0120.00714.4370.0540.0540.0000.0000.0000.000
10A9ASP-1-0.824-0.86114.176-0.337-0.3370.0000.0000.0000.000
11A10LYS10.8610.93613.3090.3680.3680.0000.0000.0000.000
12A11THR0-0.109-0.05618.9840.0260.0260.0000.0000.0000.000
13A12LEU00.0670.01621.943-0.002-0.0020.0000.0000.0000.000
14A13ASN0-0.0280.00524.732-0.005-0.0050.0000.0000.0000.000
15A14PRO00.0890.04820.022-0.005-0.0050.0000.0000.0000.000
16A15SER00.017-0.00621.116-0.018-0.0180.0000.0000.0000.000
17A16PHE0-0.029-0.01123.038-0.006-0.0060.0000.0000.0000.000
18A18LEU00.0600.02816.693-0.013-0.0130.0000.0000.0000.000
19A19LYS10.9020.96819.4720.1280.1280.0000.0000.0000.000
20A20PHE0-0.011-0.00321.0860.0040.0040.0000.0000.0000.000
21A21LEU00.027-0.00415.7860.0100.0100.0000.0000.0000.000
22A22ASN0-0.005-0.01316.896-0.032-0.0320.0000.0000.0000.000
23A23THR0-0.0490.00818.8740.0160.0160.0000.0000.0000.000
24A24LYS10.9050.95821.1110.1500.1500.0000.0000.0000.000
25A25PHE0-0.0130.02914.6060.0020.0020.0000.0000.0000.000
26A26ALA00.0390.03215.7420.0170.0170.0000.0000.0000.000
27A27SER00.0540.02914.606-0.044-0.0440.0000.0000.0000.000
28A28ALA00.0300.0009.679-0.032-0.0320.0000.0000.0000.000
29A29ASN0-0.0220.00211.5800.0100.0100.0000.0000.0000.000
30A30LEU00.0920.02113.070-0.008-0.0080.0000.0000.0000.000
31A31GLN00.0530.03415.5240.0030.0030.0000.0000.0000.000
32A32ALA0-0.023-0.01517.4780.0010.0010.0000.0000.0000.000
33A33LEU00.0050.00015.3030.0020.0020.0000.0000.0000.000
34A34ALA00.0360.02318.4450.0010.0010.0000.0000.0000.000
35A35LYS10.9190.95920.9770.0700.0700.0000.0000.0000.000
36A36THR0-0.016-0.00620.846-0.005-0.0050.0000.0000.0000.000
37A37THR0-0.022-0.03720.830-0.003-0.0030.0000.0000.0000.000
38A38LEU00.0710.04923.5480.0030.0030.0000.0000.0000.000
39A39ASP-1-0.749-0.83226.245-0.070-0.0700.0000.0000.0000.000
40A40SER0-0.045-0.02425.8890.0030.0030.0000.0000.0000.000
41A41THR0-0.020-0.02426.9060.0020.0020.0000.0000.0000.000
42A42GLN00.0870.03829.4780.0010.0010.0000.0000.0000.000
43A43ALA0-0.037-0.01031.4270.0040.0040.0000.0000.0000.000
44A44ARG10.8740.92330.3660.0910.0910.0000.0000.0000.000
45A45ALA00.0660.05733.6460.0030.0030.0000.0000.0000.000
46A46THR00.0440.02035.6280.0050.0050.0000.0000.0000.000
47A47GLN0-0.055-0.02834.0130.0010.0010.0000.0000.0000.000
48A48THR00.023-0.00436.6880.0020.0020.0000.0000.0000.000
49A49LEU00.0550.04839.3680.0020.0020.0000.0000.0000.000
50A50LYS10.9590.98141.6270.0390.0390.0000.0000.0000.000
51A51LYS10.9170.97341.8960.0490.0490.0000.0000.0000.000
52A52LEU00.0330.00841.9000.0020.0020.0000.0000.0000.000
53A53GLN0-0.0150.01045.1810.0010.0010.0000.0000.0000.000
54A54SER00.0090.02946.9650.0010.0010.0000.0000.0000.000
55A55ILE0-0.0150.00545.2140.0020.0020.0000.0000.0000.000
56A56ILE0-0.035-0.02248.4870.0020.0020.0000.0000.0000.000
57A57ASP-1-0.810-0.89851.345-0.029-0.0290.0000.0000.0000.000
58A58GLY0-0.0170.01352.5660.0010.0010.0000.0000.0000.000
59A59GLY0-0.0210.00754.1720.0010.0010.0000.0000.0000.000
60A60VAL0-0.036-0.01151.2700.0000.0000.0000.0000.0000.000
61A61ASP-1-0.785-0.87754.048-0.030-0.0300.0000.0000.0000.000
62A62PRO00.047-0.00254.744-0.001-0.0010.0000.0000.0000.000
63A63ARG10.9220.95452.1170.0300.0300.0000.0000.0000.000
64A64SER00.043-0.00450.318-0.002-0.0020.0000.0000.0000.000
65A65LYS10.8530.93350.1140.0270.0270.0000.0000.0000.000
66A66LEU0-0.0070.00751.1460.0000.0000.0000.0000.0000.000
67A67ALA00.0240.01147.0060.0000.0000.0000.0000.0000.000
68A68TYR00.029-0.01745.072-0.002-0.0020.0000.0000.0000.000
69A69ARG10.9660.97946.4860.0270.0270.0000.0000.0000.000
70A70SER0-0.046-0.07545.1340.0000.0000.0000.0000.0000.000
71A111CYS0-0.0150.01539.1460.0000.0000.0000.0000.0000.000
72A72VAL0-0.038-0.01942.515-0.002-0.0020.0000.0000.0000.000
73A73ASP-1-0.811-0.88243.647-0.032-0.0320.0000.0000.0000.000
74A74GLU-1-0.774-0.86540.114-0.041-0.0410.0000.0000.0000.000
75A75TYR0-0.011-0.05435.850-0.004-0.0040.0000.0000.0000.000
76A76GLU-1-0.938-0.96039.208-0.034-0.0340.0000.0000.0000.000
77A77SER00.0030.02040.1160.0010.0010.0000.0000.0000.000
78A78ALA00.015-0.00235.381-0.001-0.0010.0000.0000.0000.000
79A79ILE0-0.066-0.02735.234-0.003-0.0030.0000.0000.0000.000
80A80GLY00.0860.04535.9570.0000.0000.0000.0000.0000.000
81A81ASN0-0.030-0.00334.0830.0030.0030.0000.0000.0000.000
82A82LEU0-0.036-0.03229.927-0.003-0.0030.0000.0000.0000.000
83A83GLU-1-0.919-0.96231.554-0.039-0.0390.0000.0000.0000.000
84A84GLU-1-0.770-0.87333.086-0.027-0.0270.0000.0000.0000.000
85A85ALA0-0.029-0.00928.5390.0010.0010.0000.0000.0000.000
86A86PHE0-0.099-0.04427.937-0.003-0.0030.0000.0000.0000.000
87A87GLU-1-0.828-0.88229.066-0.026-0.0260.0000.0000.0000.000
88A88HIS0-0.0270.00828.8370.0030.0030.0000.0000.0000.000
89A89LEU0-0.015-0.00422.2400.0020.0020.0000.0000.0000.000
90A90ALA0-0.022-0.00225.1630.0020.0020.0000.0000.0000.000
91A91SER0-0.047-0.00627.3280.0060.0060.0000.0000.0000.000
92A92GLY00.0080.00523.4750.0060.0060.0000.0000.0000.000
93A93ASP-1-0.785-0.88423.628-0.020-0.0200.0000.0000.0000.000
94A94GLY00.0470.00822.789-0.007-0.0070.0000.0000.0000.000
95A95MET0-0.010-0.00523.757-0.006-0.0060.0000.0000.0000.000
96A96GLY00.0460.02626.336-0.003-0.0030.0000.0000.0000.000
97A97MET0-0.046-0.01823.350-0.004-0.0040.0000.0000.0000.000
98A98ASN0-0.064-0.02123.7450.0010.0010.0000.0000.0000.000
99A99MET00.0360.02226.764-0.002-0.0020.0000.0000.0000.000
100A100LYS10.8990.94830.3660.0320.0320.0000.0000.0000.000
101A101VAL0-0.004-0.01626.528-0.002-0.0020.0000.0000.0000.000
102A102SER0-0.022-0.01229.349-0.004-0.0040.0000.0000.0000.000
103A103ALA00.0420.03630.5380.0000.0000.0000.0000.0000.000
104A104ALA00.0140.01031.7280.0010.0010.0000.0000.0000.000
105A105LEU0-0.068-0.03928.436-0.002-0.0020.0000.0000.0000.000
106A106ASP-1-0.794-0.89132.277-0.053-0.0530.0000.0000.0000.000
107A107GLY00.0270.03735.3710.0020.0020.0000.0000.0000.000
108A108ALA0-0.054-0.03333.8940.0010.0010.0000.0000.0000.000
109A109ASP-1-0.781-0.88634.349-0.067-0.0670.0000.0000.0000.000
110A110THR00.0290.02036.2950.0020.0020.0000.0000.0000.000
111A112LEU0-0.057-0.04035.2190.0010.0010.0000.0000.0000.000
112A113ASP-1-0.906-0.95739.645-0.050-0.0500.0000.0000.0000.000
113A114ASP-1-0.783-0.81241.772-0.037-0.0370.0000.0000.0000.000
114A115VAL0-0.044-0.04342.1610.0030.0030.0000.0000.0000.000
115A116LYS10.9340.98742.7650.0430.0430.0000.0000.0000.000
116A117ARG10.8930.94144.3200.0380.0380.0000.0000.0000.000
117A118LEU0-0.0120.01746.8770.0020.0020.0000.0000.0000.000
118A119ARG10.9530.99248.0600.0350.0350.0000.0000.0000.000
119A120SER00.0150.01348.345-0.002-0.0020.0000.0000.0000.000
120A121VAL00.0390.03143.6380.0010.0010.0000.0000.0000.000
121A122ASP-1-0.696-0.83643.290-0.051-0.0510.0000.0000.0000.000
122A123SER0-0.003-0.01040.632-0.003-0.0030.0000.0000.0000.000
123A124SER0-0.061-0.03839.025-0.004-0.0040.0000.0000.0000.000
124A125VAL00.0560.02938.560-0.003-0.0030.0000.0000.0000.000
125A126VAL00.0090.01337.869-0.003-0.0030.0000.0000.0000.000
126A127ASN0-0.042-0.04035.334-0.005-0.0050.0000.0000.0000.000
127A128ASN00.0130.00134.090-0.010-0.0100.0000.0000.0000.000
128A129SER00.0630.05733.914-0.002-0.0020.0000.0000.0000.000
129A130LYS10.9330.97932.3400.0730.0730.0000.0000.0000.000
130A131THR0-0.074-0.03529.271-0.007-0.0070.0000.0000.0000.000
131A132ILE00.0350.01929.131-0.008-0.0080.0000.0000.0000.000
132A133LYS10.8960.95829.6270.0740.0740.0000.0000.0000.000
133A134ASN0-0.024-0.00126.174-0.004-0.0040.0000.0000.0000.000
134A135LEU0-0.056-0.02524.803-0.012-0.0120.0000.0000.0000.000
135A136CYS00.0110.01624.979-0.003-0.0030.0000.0000.0000.000
136A137GLY00.0340.02424.9550.0000.0000.0000.0000.0000.000
137A138ILE0-0.006-0.01619.610-0.009-0.0090.0000.0000.0000.000
138A139ALA00.0150.00720.722-0.009-0.0090.0000.0000.0000.000
139A140LEU0-0.0120.01122.4320.0050.0050.0000.0000.0000.000
140A141VAL0-0.0010.00117.1110.0050.0050.0000.0000.0000.000
141A142ILE00.025-0.00417.2130.0010.0010.0000.0000.0000.000
142A143SER00.013-0.00918.4770.0130.0130.0000.0000.0000.000
143A144ASN0-0.036-0.00219.3600.0090.0090.0000.0000.0000.000
144A145MET0-0.062-0.02314.2230.0020.0020.0000.0000.0000.000
145A146LEU0-0.0500.01116.1180.0100.0100.0000.0000.0000.000
146A147PRO00.0000.01316.5480.0070.0070.0000.0000.0000.000
147A148ARG10.9470.99417.061-0.046-0.0460.0000.0000.0000.000
148A149ASN-1-0.933-0.95722.2030.0380.0380.0000.0000.0000.000
149A150HOH0-0.058-0.04425.641-0.004-0.0040.0000.0000.0000.000
150A151HOH0-0.028-0.02230.8950.0010.0010.0000.0000.0000.000
151A152HOH0-0.020-0.01621.2610.0060.0060.0000.0000.0000.000
152A153HOH0-0.022-0.01539.0010.0010.0010.0000.0000.0000.000
153A155HOH0-0.016-0.01349.320-0.001-0.0010.0000.0000.0000.000
154A156HOH0-0.056-0.03036.3180.0010.0010.0000.0000.0000.000
155A157HOH0-0.018-0.01819.031-0.005-0.0050.0000.0000.0000.000
156A158HOH00.002-0.00745.407-0.001-0.0010.0000.0000.0000.000
157A159HOH00.029-0.00122.9200.0060.0060.0000.0000.0000.000
158A160HOH0-0.014-0.03336.6270.0000.0000.0000.0000.0000.000
159A161HOH00.0000.00022.4780.0030.0030.0000.0000.0000.000
160A162HOH00.0400.02536.5680.0000.0000.0000.0000.0000.000
161A163HOH0-0.035-0.01539.2380.0000.0000.0000.0000.0000.000
162A164HOH00.0000.00850.0900.0010.0010.0000.0000.0000.000
163A165HOH0-0.049-0.02927.7780.0020.0020.0000.0000.0000.000
164A166HOH0-0.054-0.03347.2260.0000.0000.0000.0000.0000.000
165A167HOH0-0.056-0.05521.880-0.001-0.0010.0000.0000.0000.000
166A168HOH0-0.033-0.02555.4460.0000.0000.0000.0000.0000.000
167A169HOH0-0.013-0.01139.4540.0000.0000.0000.0000.0000.000
168A170HOH00.0220.01312.688-0.015-0.0150.0000.0000.0000.000
169A171HOH0-0.015-0.01920.5040.0040.0040.0000.0000.0000.000
170A172HOH00.009-0.01537.1270.0010.0010.0000.0000.0000.000
171A173HOH0-0.047-0.03617.4040.0050.0050.0000.0000.0000.000
172A174HOH0-0.046-0.02456.9570.0000.0000.0000.0000.0000.000
173A175HOH0-0.033-0.03533.100-0.001-0.0010.0000.0000.0000.000
174A176HOH0-0.005-0.00810.650-0.054-0.0540.0000.0000.0000.000
175A177HOH0-0.068-0.04234.8380.0000.0000.0000.0000.0000.000
176A178HOH0-0.023-0.01644.2110.0000.0000.0000.0000.0000.000
177A179HOH0-0.0020.00011.4690.0260.0260.0000.0000.0000.000
178A180HOH0-0.052-0.03834.369-0.001-0.0010.0000.0000.0000.000
179A181HOH0-0.0040.01139.7420.0000.0000.0000.0000.0000.000
180A182HOH00.0420.02824.367-0.003-0.0030.0000.0000.0000.000
181A183HOH0-0.045-0.02946.6490.0000.0000.0000.0000.0000.000
182A184HOH00.0460.02957.8440.0000.0000.0000.0000.0000.000
183A185HOH0-0.0040.00546.288-0.001-0.0010.0000.0000.0000.000
184A186HOH00.0490.03624.517-0.004-0.0040.0000.0000.0000.000
185A187HOH0-0.013-0.01920.2850.0020.0020.0000.0000.0000.000
186A188HOH0-0.068-0.05540.9370.0000.0000.0000.0000.0000.000
187A189HOH0-0.0020.00147.9640.0010.0010.0000.0000.0000.000
188A191HOH0-0.044-0.03951.5090.0000.0000.0000.0000.0000.000
189A192HOH0-0.040-0.02540.8760.0000.0000.0000.0000.0000.000
190A193HOH0-0.066-0.03934.2750.0010.0010.0000.0000.0000.000
191A194HOH0-0.034-0.04229.8830.0000.0000.0000.0000.0000.000
192A195HOH0-0.019-0.01937.0520.0010.0010.0000.0000.0000.000
193A196HOH0-0.014-0.01317.2000.0170.0170.0000.0000.0000.000
194A198HOH0-0.023-0.01332.836-0.001-0.0010.0000.0000.0000.000
195A199HOH00.0380.0288.668-0.036-0.0360.0000.0000.0000.000
196A200HOH0-0.011-0.00843.091-0.001-0.0010.0000.0000.0000.000
197A202HOH00.0180.01638.6100.0000.0000.0000.0000.0000.000
198A203HOH0-0.027-0.01817.595-0.008-0.0080.0000.0000.0000.000
199A204HOH0-0.039-0.03321.037-0.001-0.0010.0000.0000.0000.000
200A207HOH0-0.032-0.02847.5660.0010.0010.0000.0000.0000.000
201A208HOH00.004-0.00536.7100.0010.0010.0000.0000.0000.000
202A210HOH0-0.027-0.02350.121-0.001-0.0010.0000.0000.0000.000
203A211HOH0-0.044-0.03040.5920.0000.0000.0000.0000.0000.000
204A212HOH0-0.010-0.01948.126-0.001-0.0010.0000.0000.0000.000
205A214HOH00.0310.02411.952-0.008-0.0080.0000.0000.0000.000
206A216HOH0-0.064-0.04248.5740.0000.0000.0000.0000.0000.000
207A217HOH0-0.072-0.05233.967-0.001-0.0010.0000.0000.0000.000
208A218HOH0-0.025-0.02246.8540.0000.0000.0000.0000.0000.000
209A220HOH0-0.034-0.01824.7550.0020.0020.0000.0000.0000.000
210A222HOH0-0.034-0.02618.5760.0020.0020.0000.0000.0000.000
211A223HOH0-0.033-0.02918.3180.0080.0080.0000.0000.0000.000
212A224HOH0-0.025-0.02150.2210.0010.0010.0000.0000.0000.000
213A226HOH00.002-0.01224.9460.0020.0020.0000.0000.0000.000
214A227HOH0-0.050-0.03856.4540.0000.0000.0000.0000.0000.000
215A228HOH0-0.018-0.01550.1490.0010.0010.0000.0000.0000.000
216A229HOH0-0.033-0.02527.5560.0020.0020.0000.0000.0000.000
217A230HOH00.0120.00837.573-0.001-0.0010.0000.0000.0000.000
218A231HOH0-0.030-0.03725.5420.0030.0030.0000.0000.0000.000
219A233HOH00.0440.02628.1470.0000.0000.0000.0000.0000.000
220A234HOH0-0.063-0.04734.6420.0000.0000.0000.0000.0000.000
221A235HOH00.0100.01328.9280.0010.0010.0000.0000.0000.000
222A236HOH0-0.016-0.00354.4830.0000.0000.0000.0000.0000.000
223A237HOH0-0.006-0.01026.7670.0010.0010.0000.0000.0000.000
224A238HOH00.0550.03831.889-0.001-0.0010.0000.0000.0000.000
225A240HOH0-0.008-0.01536.1270.0000.0000.0000.0000.0000.000
226A241HOH00.013-0.01032.0720.0000.0000.0000.0000.0000.000
227A244HOH0-0.055-0.06711.6710.0140.0140.0000.0000.0000.000
228A246HOH0-0.028-0.01725.2760.0000.0000.0000.0000.0000.000
229A250HOH0-0.048-0.03036.8570.0010.0010.0000.0000.0000.000
230A251HOH0-0.011-0.02427.7770.0040.0040.0000.0000.0000.000
231A252HOH0-0.081-0.05244.1590.0010.0010.0000.0000.0000.000