Manual

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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XR1G8

Calculation Name: 4QAS-B-Xray13

Preferred Name:

Target Type:

Ligand Name: sulfate ion

ligand 3-letter code: SO4

PDB ID: 4QAS

Chain ID: B

ChEMBL ID:

UniProt ID: A0A0H3

Base Structure: X-ray

Registration Date: 2018-03-01

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 196
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2226090.892383
FMO2-HF: Nuclear repulsion 2150219.005265
FMO2-HF: Total energy -75871.887118
FMO2-MP2: Total energy -76094.701422


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:0:ACE)


Summations of interaction energy for fragment #1(B:0:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-0.2490.502-0.012-0.325-0.414-0.001
Interaction energy analysis for fragmet #1(B:0:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.016 / q_NPA : -0.021
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B2PHE00.0260.0313.8391.0181.769-0.012-0.325-0.414-0.001
4B3LYS10.9220.9725.8250.2040.2040.0000.0000.0000.000
5B4LEU00.0070.0069.3000.1300.1300.0000.0000.0000.000
6B5LEU00.0030.00912.9850.0050.0050.0000.0000.0000.000
7B6LEU0-0.030-0.01715.9730.0170.0170.0000.0000.0000.000
8B7ILE00.0180.00519.3780.0100.0100.0000.0000.0000.000
9B8PHE00.0350.01322.5380.0020.0020.0000.0000.0000.000
10B9ALA00.0450.01925.9970.0040.0040.0000.0000.0000.000
11B10ASP-1-0.846-0.92829.209-0.057-0.0570.0000.0000.0000.000
12B11PRO00.042-0.00229.530-0.006-0.0060.0000.0000.0000.000
13B12ALA0-0.045-0.02030.367-0.005-0.0050.0000.0000.0000.000
14B13GLU-1-0.874-0.94629.995-0.072-0.0720.0000.0000.0000.000
15B14ALA00.0330.01725.892-0.007-0.0070.0000.0000.0000.000
16B15ALA0-0.022-0.00526.765-0.011-0.0110.0000.0000.0000.000
17B16ARG10.8750.91828.3700.1020.1020.0000.0000.0000.000
18B17THR00.0910.03322.594-0.010-0.0100.0000.0000.0000.000
19B18LEU0-0.027-0.00822.628-0.016-0.0160.0000.0000.0000.000
20B19SER0-0.081-0.04124.5050.0000.0000.0000.0000.0000.000
21B20LEU0-0.074-0.01622.4680.0020.0020.0000.0000.0000.000
22B21PHE00.0210.00618.261-0.015-0.0150.0000.0000.0000.000
23B22PRO0-0.0270.00919.9890.0190.0190.0000.0000.0000.000
24B23PHE0-0.034-0.02117.941-0.011-0.0110.0000.0000.0000.000
25B24SER0-0.0130.00718.9310.0260.0260.0000.0000.0000.000
26B25LEU0-0.006-0.01720.378-0.006-0.0060.0000.0000.0000.000
27B26ASN0-0.029-0.00218.1070.0200.0200.0000.0000.0000.000
28B27LYS10.9790.98319.9540.0610.0610.0000.0000.0000.000
29B28GLU-1-0.901-0.95823.888-0.051-0.0510.0000.0000.0000.000
30B29ASN0-0.085-0.04125.2200.0010.0010.0000.0000.0000.000
31B30PHE0-0.006-0.00516.3910.0020.0020.0000.0000.0000.000
32B31TYR0-0.006-0.01220.3520.0090.0090.0000.0000.0000.000
33B32THR0-0.037-0.02914.574-0.015-0.0150.0000.0000.0000.000
34B33TYR00.0460.00815.2380.0350.0350.0000.0000.0000.000
35B34HIS0-0.0140.00210.549-0.004-0.0040.0000.0000.0000.000
36B35THR00.0110.01811.4320.0390.0390.0000.0000.0000.000
37B36GLU-1-0.882-0.9548.723-0.739-0.7390.0000.0000.0000.000
38B37ASN0-0.016-0.0136.578-0.201-0.2010.0000.0000.0000.000
39B38VAL00.0090.0117.071-0.348-0.3480.0000.0000.0000.000
40B39LEU0-0.022-0.0069.0920.1240.1240.0000.0000.0000.000
41B40LEU0-0.026-0.01910.4370.0330.0330.0000.0000.0000.000
42B41ASP-1-0.736-0.83013.980-0.222-0.2220.0000.0000.0000.000
43B42VAL0-0.036-0.02315.9550.0080.0080.0000.0000.0000.000
44B43MET0-0.0140.00419.6410.0120.0120.0000.0000.0000.000
45B44VAL0-0.022-0.00522.018-0.001-0.0010.0000.0000.0000.000
46B45LEU0-0.018-0.00525.7660.0070.0070.0000.0000.0000.000
47B46LYS10.9270.96726.9580.0460.0460.0000.0000.0000.000
48B47THR0-0.062-0.02830.8250.0030.0030.0000.0000.0000.000
49B48TRP00.0710.04031.688-0.001-0.0010.0000.0000.0000.000
50B49GLY00.003-0.01832.8460.0040.0040.0000.0000.0000.000
51B50TYR00.0310.01031.767-0.001-0.0010.0000.0000.0000.000
52B51ARG10.9310.96831.7660.0210.0210.0000.0000.0000.000
53B52GLY00.0270.01831.0540.0020.0020.0000.0000.0000.000
54B53VAL00.0090.00126.472-0.002-0.0020.0000.0000.0000.000
55B54VAL0-0.036-0.01927.1530.0020.0020.0000.0000.0000.000
56B55GLN0-0.042-0.02228.321-0.001-0.0010.0000.0000.0000.000
57B56ALA0-0.017-0.00124.9060.0010.0010.0000.0000.0000.000
58B57LEU0-0.004-0.00921.300-0.003-0.0030.0000.0000.0000.000
59B58SER0-0.0100.03523.9230.0090.0090.0000.0000.0000.000
60B59PRO0-0.015-0.01722.041-0.001-0.0010.0000.0000.0000.000
61B60PRO00.0250.01820.149-0.009-0.0090.0000.0000.0000.000
62B61PRO0-0.022-0.00516.1670.0150.0150.0000.0000.0000.000
63B62SER00.0530.00714.277-0.010-0.0100.0000.0000.0000.000
64B63GLY0-0.033-0.02310.692-0.014-0.0140.0000.0000.0000.000
65B64TYR0-0.116-0.0979.516-0.001-0.0010.0000.0000.0000.000
66B65ASP-1-0.797-0.8927.532-0.287-0.2870.0000.0000.0000.000
67B66LEU0-0.049-0.03210.6930.0250.0250.0000.0000.0000.000
68B67TRP00.0120.00514.114-0.021-0.0210.0000.0000.0000.000
69B68ILE00.010-0.00417.2870.0080.0080.0000.0000.0000.000
70B69ASN0-0.0010.01019.9220.0080.0080.0000.0000.0000.000
71B70ALA00.006-0.00823.4690.0020.0020.0000.0000.0000.000
72B71GLY00.020-0.00225.4350.0030.0030.0000.0000.0000.000
73B72PHE0-0.047-0.03329.155-0.001-0.0010.0000.0000.0000.000
74B73ALA00.0130.01532.7290.0020.0020.0000.0000.0000.000
75B74GLY0-0.034-0.00134.5130.0000.0000.0000.0000.0000.000
76B75ALA00.009-0.00237.4640.0000.0000.0000.0000.0000.000
77B76ALA00.0450.00239.5270.0010.0010.0000.0000.0000.000
78B77ASN00.0860.04541.5180.0020.0020.0000.0000.0000.000
79B78PRO00.0160.00242.600-0.002-0.0020.0000.0000.0000.000
80B79ASN0-0.057-0.03342.984-0.001-0.0010.0000.0000.0000.000
81B80ILE0-0.0350.00737.591-0.002-0.0020.0000.0000.0000.000
82B81PRO00.0070.01838.5540.0010.0010.0000.0000.0000.000
83B82LEU00.0080.02038.613-0.003-0.0030.0000.0000.0000.000
84B83LEU0-0.041-0.02436.363-0.001-0.0010.0000.0000.0000.000
85B84LYS10.9130.96334.1440.0590.0590.0000.0000.0000.000
86B85THR00.013-0.00228.1850.0050.0050.0000.0000.0000.000
87B86TYR00.0280.00830.1650.0010.0010.0000.0000.0000.000
88B87THR0-0.0220.00824.653-0.006-0.0060.0000.0000.0000.000
89B88ILE0-0.002-0.01526.2230.0070.0070.0000.0000.0000.000
90B89THR0-0.022-0.01226.082-0.002-0.0020.0000.0000.0000.000
91B90SER00.0260.02527.6540.0020.0020.0000.0000.0000.000
92B91VAL0-0.016-0.00927.858-0.004-0.0040.0000.0000.0000.000
93B92LYS10.9800.99730.5540.0260.0260.0000.0000.0000.000
94B93GLU-1-0.850-0.94033.483-0.015-0.0150.0000.0000.0000.000
95B94LEU0-0.030-0.00235.4960.0010.0010.0000.0000.0000.000
96B95THR0-0.061-0.04238.7580.0010.0010.0000.0000.0000.000
97B96PRO00.0690.04937.7240.0000.0000.0000.0000.0000.000
98B97THR0-0.006-0.02134.9340.0010.0010.0000.0000.0000.000
99B98THR0-0.058-0.02338.1090.0010.0010.0000.0000.0000.000
100B99SER0-0.026-0.00839.1710.0000.0000.0000.0000.0000.000
101B100VAL0-0.080-0.03536.3200.0010.0010.0000.0000.0000.000
102B101GLU-1-0.848-0.91737.436-0.013-0.0130.0000.0000.0000.000
103B102GLU-1-0.849-0.93332.5160.0020.0020.0000.0000.0000.000
104B103GLU-1-0.924-0.98231.660-0.022-0.0220.0000.0000.0000.000
105B104LEU0-0.057-0.02726.4340.0040.0040.0000.0000.0000.000
106B105GLU-1-0.893-0.94925.602-0.024-0.0240.0000.0000.0000.000
107B106VAL0-0.074-0.03323.6800.0000.0000.0000.0000.0000.000
108B107THR00.0210.00818.8110.0030.0030.0000.0000.0000.000
109B108PRO0-0.0210.00021.885-0.013-0.0130.0000.0000.0000.000
110B109ILE00.0380.01519.624-0.010-0.0100.0000.0000.0000.000
111B110PRO00.0140.00220.1160.0150.0150.0000.0000.0000.000
112B111ARG10.9360.95423.1440.1000.1000.0000.0000.0000.000
113B112LEU00.0300.01824.8530.0000.0000.0000.0000.0000.000
114B113PRO0-0.064-0.02627.8730.0060.0060.0000.0000.0000.000
115B114LEU00.0400.02328.021-0.004-0.0040.0000.0000.0000.000
116B115ALA0-0.015-0.00430.4780.0040.0040.0000.0000.0000.000
117B116GLN00.0010.01330.797-0.002-0.0020.0000.0000.0000.000
118B117LEU0-0.029-0.01929.557-0.002-0.0020.0000.0000.0000.000
119B118THR00.0040.01032.7230.0040.0040.0000.0000.0000.000
120B119SER0-0.018-0.01431.994-0.002-0.0020.0000.0000.0000.000
121B120VAL0-0.014-0.00834.4350.0040.0040.0000.0000.0000.000
122B121ARG10.8850.93735.4410.0100.0100.0000.0000.0000.000
123B122SER0-0.018-0.01438.3670.0000.0000.0000.0000.0000.000
124B123PRO0-0.023-0.02940.891-0.001-0.0010.0000.0000.0000.000
125B124TYR00.1020.06240.9680.0010.0010.0000.0000.0000.000
126B125ARG10.8770.93742.6970.0270.0270.0000.0000.0000.000
127B126ASP-1-0.849-0.91145.458-0.018-0.0180.0000.0000.0000.000
128B127GLY0-0.079-0.04346.6370.0010.0010.0000.0000.0000.000
129B128PHE0-0.007-0.02044.436-0.001-0.0010.0000.0000.0000.000
130B129HIS0-0.027-0.00646.6830.0000.0000.0000.0000.0000.000
131B130GLU-1-0.816-0.90442.749-0.017-0.0170.0000.0000.0000.000
132B131HIS0-0.0270.00641.578-0.002-0.0020.0000.0000.0000.000
133B132LEU0-0.057-0.03039.254-0.001-0.0010.0000.0000.0000.000
134B133GLN00.0260.00635.642-0.004-0.0040.0000.0000.0000.000
135B134LEU0-0.023-0.01232.4130.0000.0000.0000.0000.0000.000
136B135VAL00.0160.00635.5130.0020.0020.0000.0000.0000.000
137B136ASP-1-0.726-0.85230.705-0.050-0.0500.0000.0000.0000.000
138B137MET0-0.0150.00833.2920.0050.0050.0000.0000.0000.000
139B138GLU-1-0.823-0.91828.734-0.045-0.0450.0000.0000.0000.000
140B139GLY00.0600.02727.4410.0010.0010.0000.0000.0000.000
141B140PHE00.0150.00127.1850.0000.0000.0000.0000.0000.000
142B141PHE0-0.030-0.02428.0400.0040.0040.0000.0000.0000.000
143B142ILE0-0.001-0.00223.0220.0030.0030.0000.0000.0000.000
144B143ALA00.0330.01223.4160.0010.0010.0000.0000.0000.000
145B144LYS10.8590.94223.7320.0080.0080.0000.0000.0000.000
146B145GLN0-0.042-0.04923.0760.0100.0100.0000.0000.0000.000
147B146ALA00.0330.01619.3530.0080.0080.0000.0000.0000.000
148B147SER0-0.011-0.00619.5020.0140.0140.0000.0000.0000.000
149B148LEU0-0.053-0.01221.3700.0130.0130.0000.0000.0000.000
150B149VAL0-0.081-0.03616.6880.0160.0160.0000.0000.0000.000
151B150ALA0-0.042-0.01216.3560.0140.0140.0000.0000.0000.000
152B151CYS0-0.0150.01514.6530.0020.0020.0000.0000.0000.000
153B152PRO00.0090.01014.256-0.006-0.0060.0000.0000.0000.000
154B153CYS00.0460.01717.043-0.019-0.0190.0000.0000.0000.000
155B154SER0-0.007-0.01219.6710.0020.0020.0000.0000.0000.000
156B155MET0-0.045-0.02021.215-0.001-0.0010.0000.0000.0000.000
157B156ILE0-0.025-0.00722.1910.0000.0000.0000.0000.0000.000
158B157LYS10.8590.90925.9660.0680.0680.0000.0000.0000.000
159B158VAL0-0.025-0.00429.6230.0010.0010.0000.0000.0000.000
160B159SER00.008-0.01132.2090.0020.0020.0000.0000.0000.000
161B160SER00.0420.00035.735-0.001-0.0010.0000.0000.0000.000
162B161ASN0-0.054-0.03937.469-0.001-0.0010.0000.0000.0000.000
163B162TYR00.0390.02640.3220.0000.0000.0000.0000.0000.000
164B163THR0-0.022-0.00841.2190.0000.0000.0000.0000.0000.000
165B164THR00.0280.01843.6900.0020.0020.0000.0000.0000.000
166B165ARG10.9110.93546.7000.0210.0210.0000.0000.0000.000
167B166GLU-1-0.863-0.95148.027-0.027-0.0270.0000.0000.0000.000
168B167GLY00.0280.04044.959-0.001-0.0010.0000.0000.0000.000
169B168GLN0-0.061-0.05839.607-0.003-0.0030.0000.0000.0000.000
170B169ASP-1-0.857-0.91743.021-0.035-0.0350.0000.0000.0000.000
171B170PHE0-0.017-0.00939.835-0.002-0.0020.0000.0000.0000.000
172B171LEU00.0330.02137.171-0.003-0.0030.0000.0000.0000.000
173B172LYS10.8890.92339.6250.0330.0330.0000.0000.0000.000
174B173ASN0-0.028-0.00341.541-0.002-0.0020.0000.0000.0000.000
175B174ASN0-0.018-0.00838.998-0.003-0.0030.0000.0000.0000.000
176B175LYS10.9991.00936.5480.0480.0480.0000.0000.0000.000
177B176VAL00.0340.01934.925-0.005-0.0050.0000.0000.0000.000
178B177LYS10.9610.97734.0930.0560.0560.0000.0000.0000.000
179B178LEU0-0.0090.00433.919-0.004-0.0040.0000.0000.0000.000
180B179SER00.0420.02330.271-0.006-0.0060.0000.0000.0000.000
181B180GLN0-0.014-0.00929.452-0.007-0.0070.0000.0000.0000.000
182B181LYS10.8980.96129.4440.0720.0720.0000.0000.0000.000
183B182LEU0-0.0140.00326.753-0.006-0.0060.0000.0000.0000.000
184B183ALA00.0210.01725.127-0.011-0.0110.0000.0000.0000.000
185B184GLU-1-0.925-0.97024.655-0.123-0.1230.0000.0000.0000.000
186B185ALA0-0.041-0.01025.040-0.005-0.0050.0000.0000.0000.000
187B186ILE00.016-0.00419.959-0.011-0.0110.0000.0000.0000.000
188B187PHE0-0.031-0.00220.039-0.027-0.0270.0000.0000.0000.000
189B188PRO0-0.001-0.01319.714-0.028-0.0280.0000.0000.0000.000
190B189ILE00.0210.01216.563-0.022-0.0220.0000.0000.0000.000
191B190TYR00.0330.03913.536-0.024-0.0240.0000.0000.0000.000
192B191SER00.033-0.01114.455-0.077-0.0770.0000.0000.0000.000
193B192SER0-0.153-0.06715.337-0.012-0.0120.0000.0000.0000.000
194B193PHE00.013-0.00210.2400.0260.0260.0000.0000.0000.000
195B194ILE0-0.044-0.00610.165-0.202-0.2020.0000.0000.0000.000
196B195NME0-0.0250.00010.4330.0780.0780.0000.0000.0000.000