FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XR48X

Calculation Name: 2BRB-A-Xray10

Preferred Name: Serine/threonine-protein kinase Chk1

Target Type: SINGLE PROTEIN

Ligand Name: 2-[(5,6-diphenylfuro[2,3-d]pyrimidin-4-yl)amino]ethanol

ligand 3-letter code: PFQ

PDB ID: 2BRB

Chain ID: A

ChEMBL ID: CHEMBL4630

UniProt ID: O14757

Base Structure: X-ray

Registration Date: 2017-06-23

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 262
LigandResidueName PFQ
LigandFragmentNumber 262
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3725232.55059
FMO2-HF: Nuclear repulsion 3617859.535087
FMO2-HF: Total energy -107373.015503
FMO2-MP2: Total energy -107684.36206


3D Structure
Snapshot
 
Ligand structure

PFQ

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-105.286-66.67042.296-22.633-58.2770.012


Interactive mode: IFIE and PIEDA for fragment #262(A:1277:PFQ)


Summations of interaction energy for fragment #262(A:1277:PFQ)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-105.286-66.6742.296-22.633-58.277-0.012
Interaction energy analysis for fragmet #262(A:1277:PFQ)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.011 / q_NPA : 0.007
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A9TRP10.7710.86311.594-1.462-1.4620.0000.0000.0000.000
2A10ASP-1-0.852-0.91915.0490.6560.6560.0000.0000.0000.000
3A11LEU00.007-0.00110.1320.2750.2750.0000.0000.0000.000
4A12VAL0-0.0300.00510.630-0.261-0.2610.0000.0000.0000.000
5A13GLN00.011-0.0016.526-0.635-0.6350.0000.0000.0000.000
6A14THR00.0020.0066.0290.5460.5460.0000.0000.0000.000
7A15LEU0-0.024-0.0242.101-5.503-2.2007.647-2.543-8.4070.017
8A16GLY00.0460.0242.431-6.701-3.6023.161-2.330-3.929-0.005
9A17GLU-1-0.959-0.9812.892-2.179-2.5740.1901.366-1.162-0.012
10A18GLY0-0.0010.0075.244-0.644-0.568-0.001-0.007-0.0680.000
11A19ALA0-0.037-0.0215.9750.6350.6350.0000.0000.0000.000
12A20TYR0-0.028-0.0295.097-0.007-0.0070.0000.0000.0000.000
13A21GLY0-0.003-0.0168.2230.4770.4770.0000.0000.0000.000
14A22GLU-1-0.883-0.9195.050-1.308-1.3080.0000.0000.0000.000
15A23VAL00.0020.0012.070-1.5580.0916.544-1.950-6.2430.006
16A24GLN0-0.0060.0044.129-1.011-0.5490.001-0.059-0.4040.000
17A25LEU00.0240.0165.5501.3341.3340.0000.0000.0000.000
18A26ALA0-0.035-0.0197.287-0.909-0.9090.0000.0000.0000.000
19A27VAL00.0640.0309.8980.4070.4070.0000.0000.0000.000
20A28ASN0-0.107-0.03912.528-0.383-0.3830.0000.0000.0000.000
21A29ARG10.9990.98515.183-0.663-0.6630.0000.0000.0000.000
22A30VAL0-0.039-0.01618.797-0.091-0.0910.0000.0000.0000.000
23A31THR00.018-0.01215.968-0.048-0.0480.0000.0000.0000.000
24A32GLU-1-0.895-0.93915.3460.6180.6180.0000.0000.0000.000
25A33GLU-1-1.006-0.99110.9632.3962.3960.0000.0000.0000.000
26A34ALA00.0040.0038.013-0.061-0.0610.0000.0000.0000.000
27A35VAL0-0.015-0.0136.3440.4230.4230.0000.0000.0000.000
28A36ALA00.0470.0332.887-2.076-0.5300.982-0.756-1.7720.007
29A37VAL0-0.047-0.0264.989-0.516-0.292-0.001-0.016-0.2070.000
30A38LYS10.9020.9532.333-7.279-5.8500.467-0.426-1.4700.004
31A39ILE0-0.020-0.0045.2120.1080.168-0.001-0.002-0.0570.000
32A40VAL00.0220.0097.583-0.463-0.4630.0000.0000.0000.000
33A41ASP-1-0.808-0.8849.9320.2030.2030.0000.0000.0000.000
34A42MET0-0.057-0.01513.6010.0010.0010.0000.0000.0000.000
35A43LYS10.8270.88415.794-0.122-0.1220.0000.0000.0000.000
36A44ARG10.8930.93819.0430.0290.0290.0000.0000.0000.000
37A45ALA00.0560.05415.505-0.083-0.0830.0000.0000.0000.000
38A46VAL0-0.042-0.04816.3190.0540.0540.0000.0000.0000.000
39A47ASP-1-0.776-0.8809.8270.5680.5680.0000.0000.0000.000
40A48CYS0-0.063-0.00413.3700.1930.1930.0000.0000.0000.000
41A49PRO00.023-0.01214.7030.1280.1280.0000.0000.0000.000
42A50GLU-1-0.997-1.00616.5810.7590.7590.0000.0000.0000.000
43A51ASN0-0.005-0.02812.3760.1210.1210.0000.0000.0000.000
44A52ILE00.0760.0618.6430.2390.2390.0000.0000.0000.000
45A53LYS10.8940.93811.490-0.894-0.8940.0000.0000.0000.000
46A54LYS10.9580.97513.330-0.900-0.9000.0000.0000.0000.000
47A55GLU-1-0.783-0.8825.4724.5944.5940.0000.0000.0000.000
48A56ILE0-0.029-0.0049.8320.4470.4470.0000.0000.0000.000
49A57CYS0-0.097-0.05111.395-0.002-0.0020.0000.0000.0000.000
50A58ILE00.0620.01710.871-0.121-0.1210.0000.0000.0000.000
51A59ASN00.007-0.0126.5820.4120.4120.0000.0000.0000.000
52A60LYS10.8420.93610.275-1.970-1.9700.0000.0000.0000.000
53A61MET0-0.075-0.02313.581-0.189-0.1890.0000.0000.0000.000
54A62LEU0-0.035-0.0039.461-0.231-0.2310.0000.0000.0000.000
55A63ASN0-0.026-0.03312.6270.3310.3310.0000.0000.0000.000
56A64HIS00.0410.01712.178-0.139-0.1390.0000.0000.0000.000
57A65GLU-1-0.922-0.95311.3851.7151.7150.0000.0000.0000.000
58A66ASN0-0.008-0.01311.2230.0100.0100.0000.0000.0000.000
59A67VAL0-0.062-0.0188.379-0.093-0.0930.0000.0000.0000.000
60A68VAL00.0080.0153.022-1.510-0.3420.116-0.325-0.9590.001
61A69LYS10.9200.9755.895-2.598-2.5980.0000.0000.0000.000
62A70PHE00.0240.0086.0720.4880.4880.0000.0000.0000.000
63A71TYR00.0020.0106.560-0.596-0.5960.0000.0000.0000.000
64A72GLY0-0.016-0.01710.203-0.533-0.5330.0000.0000.0000.000
65A73HIS0-0.003-0.00110.6710.2690.2690.0000.0000.0000.000
66A74ARG10.9580.98212.456-1.796-1.7960.0000.0000.0000.000
67A75ARG10.9160.95813.893-0.959-0.9590.0000.0000.0000.000
68A76GLU-1-0.894-0.94316.0090.6530.6530.0000.0000.0000.000
69A77GLY00.0180.01317.955-0.073-0.0730.0000.0000.0000.000
70A78ASN0-0.052-0.04718.2850.0260.0260.0000.0000.0000.000
71A79ILE00.0430.03412.7210.0230.0230.0000.0000.0000.000
72A80GLN0-0.032-0.01811.6690.2530.2530.0000.0000.0000.000
73A81TYR00.0270.0239.6750.0080.0080.0000.0000.0000.000
74A82LEU0-0.025-0.0356.077-0.104-0.1040.0000.0000.0000.000
75A83PHE0-0.0230.0006.1710.4840.4840.0000.0000.0000.000
76A84LEU00.015-0.0112.685-3.827-1.3880.759-1.045-2.1530.012
77A85GLU-1-0.823-0.9334.0843.2293.8330.001-0.105-0.5000.000
78A86TYR00.0150.0042.180-8.901-4.0055.657-3.758-6.795-0.005
79A87CYS0-0.025-0.0062.294-10.656-8.5634.040-1.816-4.3170.021
80A88SER00.019-0.0082.257-5.080-3.8894.184-1.902-3.472-0.023
81A89GLY00.0170.0192.758-4.747-2.8920.485-0.984-1.356-0.015
82A90GLY00.0010.0193.142-2.531-0.5470.755-0.814-1.9250.003
83A91GLU-1-0.884-0.9682.232-23.422-19.7022.865-2.362-4.222-0.043
84A92LEU0-0.016-0.0235.2230.5480.626-0.001-0.002-0.0750.000
85A93PHE0-0.035-0.0297.2270.5410.5410.0000.0000.0000.000
86A94ASP-1-0.879-0.9366.265-5.548-5.5480.0000.0000.0000.000
87A95ARG10.8100.9049.4511.5991.5990.0000.0000.0000.000
88A96ILE0-0.068-0.01111.6810.3960.3960.0000.0000.0000.000
89A97GLU-1-0.902-0.95114.215-1.535-1.5350.0000.0000.0000.000
90A98PRO0-0.009-0.01715.4240.1470.1470.0000.0000.0000.000
91A99ASP-1-0.963-1.00317.764-0.745-0.7450.0000.0000.0000.000
92A100ILE0-0.059-0.03420.0520.1170.1170.0000.0000.0000.000
93A101GLY0-0.030-0.00218.0660.0850.0850.0000.0000.0000.000
94A102MET00.0250.03014.097-0.033-0.0330.0000.0000.0000.000
95A103PRO00.006-0.00118.4570.0940.0940.0000.0000.0000.000
96A104GLU-1-0.822-0.92020.691-0.240-0.2400.0000.0000.0000.000
97A105PRO00.017-0.00421.9730.0300.0300.0000.0000.0000.000
98A106ASP-1-0.913-0.94216.988-0.426-0.4260.0000.0000.0000.000
99A107ALA00.0450.00717.6530.0520.0520.0000.0000.0000.000
100A108GLN0-0.084-0.06418.6610.0810.0810.0000.0000.0000.000
101A109ARG10.9160.97413.8770.0300.0300.0000.0000.0000.000
102A110PHE00.0390.00712.8260.1530.1530.0000.0000.0000.000
103A111PHE00.0300.00215.9380.1630.1630.0000.0000.0000.000
104A112HIS0-0.080-0.05518.2150.1250.1250.0000.0000.0000.000
105A113GLN0-0.005-0.00114.6500.1180.1180.0000.0000.0000.000
106A114LEU00.0330.02412.8730.2290.2290.0000.0000.0000.000
107A115MET0-0.030-0.02115.2620.1590.1590.0000.0000.0000.000
108A116ALA0-0.049-0.01116.8420.0580.0580.0000.0000.0000.000
109A117GLY00.0580.02813.4810.0940.0940.0000.0000.0000.000
110A118VAL00.009-0.00614.3790.1160.1160.0000.0000.0000.000
111A119VAL0-0.038-0.02415.840-0.027-0.0270.0000.0000.0000.000
112A120TYR00.0020.02813.7160.0350.0350.0000.0000.0000.000
113A121LEU0-0.004-0.00211.336-0.008-0.0080.0000.0000.0000.000
114A122HIS0-0.024-0.03015.621-0.089-0.0890.0000.0000.0000.000
115A123GLY0-0.0040.00218.939-0.081-0.0810.0000.0000.0000.000
116A124ILE0-0.057-0.01416.080-0.075-0.0750.0000.0000.0000.000
117A125GLY0-0.029-0.01219.3000.0150.0150.0000.0000.0000.000
118A126ILE0-0.038-0.02812.391-0.040-0.0400.0000.0000.0000.000
119A127THR0-0.024-0.04515.872-0.058-0.0580.0000.0000.0000.000
120A128HIS00.025-0.0097.341-0.474-0.4740.0000.0000.0000.000
121A129ARG10.7980.87011.849-0.628-0.6280.0000.0000.0000.000
122A130ASP-1-0.815-0.9029.882-0.918-0.9180.0000.0000.0000.000
123A131ILE00.0120.01310.081-0.108-0.1080.0000.0000.0000.000
124A132LYS10.9130.9448.3212.0732.0730.0000.0000.0000.000
125A133PRO00.0070.0089.5270.1650.1650.0000.0000.0000.000
126A134GLU-1-0.801-0.9095.248-2.951-2.9510.0000.0000.0000.000
127A135ASN0-0.057-0.0164.631-2.609-2.300-0.001-0.010-0.2980.000
128A136LEU0-0.101-0.0356.1872.2322.2320.0000.0000.0000.000
129A137LEU00.0460.0242.648-4.655-1.3033.316-1.076-5.5920.002
130A138LEU00.0000.0076.1810.8110.8110.0000.0000.0000.000
131A139ASP-1-0.811-0.9005.6091.8441.8440.0000.0000.0000.000
132A140GLU-1-0.890-0.9557.4961.2901.2900.0000.0000.0000.000
133A141ARG10.8650.9378.788-0.987-0.9870.0000.0000.0000.000
134A142ASP-1-0.849-0.9129.948-0.706-0.7060.0000.0000.0000.000
135A143ASN0-0.131-0.08011.060-0.103-0.1030.0000.0000.0000.000
136A144LEU00.0350.02310.0140.2900.2900.0000.0000.0000.000
137A145LYS10.8240.9086.661-2.627-2.6270.0000.0000.0000.000
138A146ILE0-0.027-0.0107.433-0.160-0.1600.0000.0000.0000.000
139A147SER0-0.015-0.0182.577-1.8420.0291.073-1.146-1.7980.014
140A148ASP-1-0.811-0.9093.258-2.751-1.3200.056-0.542-0.9450.004
141A149PHE00.019-0.0064.214-2.541-2.3690.002-0.023-0.1510.000
142A150GLY00.0520.0296.685-0.498-0.4980.0000.0000.0000.000
143A151LEU0-0.011-0.0088.324-0.440-0.4400.0000.0000.0000.000
144A152ALA00.0330.05710.440-0.263-0.2630.0000.0000.0000.000
145A153THR0-0.114-0.08712.186-0.111-0.1110.0000.0000.0000.000
146A154VAL00.0240.03415.6620.0050.0050.0000.0000.0000.000
147A155PHE0-0.0030.00818.666-0.102-0.1020.0000.0000.0000.000
148A156ARG10.8850.96321.246-0.733-0.7330.0000.0000.0000.000
149A157TYR00.0440.01622.4050.0480.0480.0000.0000.0000.000
150A158ASN00.000-0.00124.784-0.028-0.0280.0000.0000.0000.000
151A159ASN0-0.023-0.01226.879-0.015-0.0150.0000.0000.0000.000
152A160ARG10.9520.97627.875-0.376-0.3760.0000.0000.0000.000
153A161GLU-1-0.867-0.92125.3480.4100.4100.0000.0000.0000.000
154A162ARG10.8130.90219.700-0.607-0.6070.0000.0000.0000.000
155A163LEU00.0210.01724.2100.0250.0250.0000.0000.0000.000
156A164LEU0-0.060-0.02919.3490.0260.0260.0000.0000.0000.000
157A165ASN00.0370.00623.194-0.046-0.0460.0000.0000.0000.000
158A166LYS10.8980.96615.735-0.347-0.3470.0000.0000.0000.000
159A167MET00.0540.03020.4240.0080.0080.0000.0000.0000.000
160A168CYS0-0.100-0.06015.0800.0490.0490.0000.0000.0000.000
161A169GLY00.0770.06213.7630.0690.0690.0000.0000.0000.000
162A170THR00.006-0.00912.776-0.242-0.2420.0000.0000.0000.000
163A171LEU00.016-0.00115.1960.0680.0680.0000.0000.0000.000
164A172PRO00.0580.03315.7780.0990.0990.0000.0000.0000.000
165A173TYR00.0380.00312.3950.1140.1140.0000.0000.0000.000
166A174VAL0-0.044-0.01017.1790.1550.1550.0000.0000.0000.000
167A175ALA00.0400.01519.361-0.020-0.0200.0000.0000.0000.000
168A176PRO00.0240.00922.3240.0030.0030.0000.0000.0000.000
169A177GLU-1-0.778-0.87624.5340.0190.0190.0000.0000.0000.000
170A178LEU0-0.0360.00019.3450.0250.0250.0000.0000.0000.000
171A179LEU00.0360.01423.055-0.005-0.0050.0000.0000.0000.000
172A180LYS10.8340.92525.8750.1680.1680.0000.0000.0000.000
173A181ARG10.8620.92828.0390.0260.0260.0000.0000.0000.000
174A182ARG10.9680.99127.610-0.105-0.1050.0000.0000.0000.000
175A183GLU-1-0.955-0.98926.8930.2130.2130.0000.0000.0000.000
176A184PHE0-0.015-0.00621.002-0.025-0.0250.0000.0000.0000.000
177A185HIS0-0.011-0.02224.7390.0100.0100.0000.0000.0000.000
178A186ALA00.026-0.00319.671-0.028-0.0280.0000.0000.0000.000
179A187GLU-1-0.882-0.94620.2670.4830.4830.0000.0000.0000.000
180A188PRO00.017-0.00420.964-0.011-0.0110.0000.0000.0000.000
181A189VAL00.0180.01718.309-0.067-0.0670.0000.0000.0000.000
182A190ASP-1-0.687-0.81515.7090.6400.6400.0000.0000.0000.000
183A191VAL0-0.0300.00117.609-0.052-0.0520.0000.0000.0000.000
184A192TRP00.0170.00020.044-0.026-0.0260.0000.0000.0000.000
185A193SER0-0.0140.00215.452-0.036-0.0360.0000.0000.0000.000
186A194CYS0-0.033-0.01416.516-0.082-0.0820.0000.0000.0000.000
187A195GLY00.0210.01317.468-0.062-0.0620.0000.0000.0000.000
188A196ILE0-0.039-0.01117.016-0.045-0.0450.0000.0000.0000.000
189A197VAL00.0490.01613.519-0.122-0.1220.0000.0000.0000.000
190A198LEU0-0.038-0.01616.059-0.082-0.0820.0000.0000.0000.000
191A199THR0-0.028-0.02718.977-0.007-0.0070.0000.0000.0000.000
192A200ALA00.0070.01015.310-0.016-0.0160.0000.0000.0000.000
193A201MET0-0.027-0.00914.898-0.047-0.0470.0000.0000.0000.000
194A202LEU0-0.016-0.01217.2350.0180.0180.0000.0000.0000.000
195A203ALA0-0.0180.00820.2590.0370.0370.0000.0000.0000.000
196A204GLY00.0470.03217.525-0.007-0.0070.0000.0000.0000.000
197A205GLU-1-0.890-0.93618.243-0.832-0.8320.0000.0000.0000.000
198A206LEU0-0.012-0.01414.8420.0730.0730.0000.0000.0000.000
199A207PRO0-0.026-0.00318.8850.0350.0350.0000.0000.0000.000
200A208TRP00.038-0.00321.3330.0650.0650.0000.0000.0000.000
201A209ASP-1-0.847-0.91320.312-0.845-0.8450.0000.0000.0000.000
202A210GLN0-0.058-0.05420.355-0.049-0.0490.0000.0000.0000.000
203A211PRO0-0.0240.02522.0730.0200.0200.0000.0000.0000.000
204A212SER0-0.057-0.05125.1100.0580.0580.0000.0000.0000.000
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