FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XR58P

Calculation Name: 3H0Y-A-Xray8

Preferred Name: Serine/threonine-protein kinase Aurora-A

Target Type: SINGLE PROTEIN

Ligand Name: 2-chloro-n-[4-({5-fluoro-2-[(4-hydroxyphenyl)amino]pyrimidin-4-yl}amino)phenyl]benzamide

ligand 3-letter code: 48B

PDB ID: 3H0Y

Chain ID: A

ChEMBL ID: CHEMBL4722

UniProt ID: O14965

Base Structure: X-ray

Registration Date: 2017-03-09

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 261
LigandResidueName 48B
LigandFragmentNumber 261
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3768228.565859
FMO2-HF: Nuclear repulsion 3661835.93146
FMO2-HF: Total energy -106392.634399
FMO2-MP2: Total energy -106706.44286


3D Structure
Snapshot
 
Ligand structure

48B

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.610-59.92361.697-26.470-69.9190.027


Interactive mode: IFIE and PIEDA for fragment #261(A:1:48B)


Summations of interaction energy for fragment #261(A:1:48B)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.61-59.92361.697-26.47-69.919-0.027
Interaction energy analysis for fragmet #261(A:1:48B)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.029 / q_NPA : -0.018
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A128TRP10.7780.88614.791-0.421-0.4210.0000.0000.0000.000
2A129ALA00.1000.05017.461-0.018-0.0180.0000.0000.0000.000
3A130LEU00.0170.00214.3430.0330.0330.0000.0000.0000.000
4A131GLU-1-0.937-0.96516.4950.4650.4650.0000.0000.0000.000
5A132ASP-1-0.755-0.87716.1980.4410.4410.0000.0000.0000.000
6A133PHE0-0.077-0.03211.7740.0080.0080.0000.0000.0000.000
7A134GLU-1-0.879-0.91214.2470.5820.5820.0000.0000.0000.000
8A135ILE0-0.015-0.01211.0610.1130.1130.0000.0000.0000.000
9A136GLY00.0280.01310.652-0.183-0.1830.0000.0000.0000.000
10A137ARG10.9390.9672.479-5.781-4.1590.329-0.723-1.2280.007
11A138PRO0-0.002-0.0257.0420.3700.3700.0000.0000.0000.000
12A139LEU0-0.051-0.0162.520-6.068-1.3264.908-2.082-7.5690.025
13A140GLY00.0400.0172.593-5.054-1.1932.237-2.288-3.809-0.006
14A141LYS10.9120.9643.291-1.673-1.9380.0480.807-0.5910.001
15A142GLY00.0580.0345.810-0.301-0.3010.0000.0000.0000.000
16A143LYS10.9400.9696.802-0.740-0.7400.0000.0000.0000.000
17A144PHE00.022-0.0059.308-0.119-0.1190.0000.0000.0000.000
18A145GLY00.0270.02110.149-0.210-0.2100.0000.0000.0000.000
19A146ASN0-0.044-0.0257.1260.5090.5090.0000.0000.0000.000
20A147VAL0-0.0110.0102.459-4.657-1.7644.553-1.758-5.6880.017
21A148TYR00.0110.0054.7920.4440.688-0.001-0.008-0.2350.000
22A149LEU00.0400.0235.4800.1230.1230.0000.0000.0000.000
23A150ALA0-0.020-0.0017.446-0.265-0.2650.0000.0000.0000.000
24A151ARG10.8450.9189.274-0.598-0.5980.0000.0000.0000.000
25A152GLU-1-0.816-0.89111.9530.4210.4210.0000.0000.0000.000
26A153LYS10.8760.92213.837-0.604-0.6040.0000.0000.0000.000
27A154GLN00.0300.02617.358-0.013-0.0130.0000.0000.0000.000
28A155SER0-0.058-0.04715.448-0.033-0.0330.0000.0000.0000.000
29A156LYS10.9210.95315.632-0.277-0.2770.0000.0000.0000.000
30A157PHE00.0110.0198.790-0.014-0.0140.0000.0000.0000.000
31A158ILE0-0.007-0.0097.7210.1140.1140.0000.0000.0000.000
32A159LEU0-0.036-0.0215.896-0.164-0.1640.0000.0000.0000.000
33A160ALA0-0.005-0.0052.483-0.3480.2652.080-0.942-1.7510.004
34A161LEU00.0310.0184.379-0.682-0.5030.000-0.025-0.1540.000
35A162LYS10.9630.9864.208-1.670-1.279-0.001-0.025-0.3650.000
36A163VAL0-0.025-0.0086.575-0.518-0.5180.0000.0000.0000.000
37A164LEU0-0.004-0.0068.8410.1440.1440.0000.0000.0000.000
38A165PHE00.0340.01311.783-0.118-0.1180.0000.0000.0000.000
39A166LYS10.9851.00015.460-0.455-0.4550.0000.0000.0000.000
40A167ALA00.0600.03717.866-0.033-0.0330.0000.0000.0000.000
41A168GLN00.006-0.01014.6360.0460.0460.0000.0000.0000.000
42A169LEU0-0.004-0.00112.807-0.049-0.0490.0000.0000.0000.000
43A170GLU-1-0.893-0.94816.9190.2760.2760.0000.0000.0000.000
44A171LYS10.8770.93820.370-0.243-0.2430.0000.0000.0000.000
45A172ALA0-0.058-0.02916.883-0.040-0.0400.0000.0000.0000.000
46A173GLY00.0240.03118.851-0.037-0.0370.0000.0000.0000.000
47A174VAL0-0.040-0.02814.695-0.022-0.0220.0000.0000.0000.000
48A175GLU-1-0.904-0.95716.2330.4190.4190.0000.0000.0000.000
49A176HIS00.009-0.00417.1700.0280.0280.0000.0000.0000.000
50A177GLN00.001-0.00413.908-0.046-0.0460.0000.0000.0000.000
51A178LEU00.0370.02610.5080.0050.0050.0000.0000.0000.000
52A179ARG10.9560.97314.169-0.271-0.2710.0000.0000.0000.000
53A180ARG11.0051.01316.418-0.121-0.1210.0000.0000.0000.000
54A181GLU-1-0.891-0.94511.9070.2750.2750.0000.0000.0000.000
55A182VAL0-0.037-0.02411.057-0.013-0.0130.0000.0000.0000.000
56A183GLU-1-0.970-0.99513.0130.1780.1780.0000.0000.0000.000
57A184ILE0-0.018-0.00915.143-0.020-0.0200.0000.0000.0000.000
58A185GLN00.0480.0069.337-0.041-0.0410.0000.0000.0000.000
59A186SER0-0.082-0.01412.638-0.031-0.0310.0000.0000.0000.000
60A187HIS0-0.059-0.04113.954-0.027-0.0270.0000.0000.0000.000
61A188LEU0-0.058-0.01413.070-0.017-0.0170.0000.0000.0000.000
62A189ARG10.8330.90513.234-0.082-0.0820.0000.0000.0000.000
63A190HIS00.1020.03913.157-0.003-0.0030.0000.0000.0000.000
64A191PRO00.0220.01912.259-0.008-0.0080.0000.0000.0000.000
65A192ASN00.009-0.00611.613-0.030-0.0300.0000.0000.0000.000
66A193ILE0-0.030-0.00710.3440.0260.0260.0000.0000.0000.000
67A194LEU0-0.0170.0072.766-1.424-0.0150.503-0.490-1.4220.003
68A195ARG10.9430.9677.0310.0200.0200.0000.0000.0000.000
69A196LEU0-0.005-0.0036.685-0.042-0.0420.0000.0000.0000.000
70A197TYR0-0.049-0.0307.090-0.057-0.0570.0000.0000.0000.000
71A198GLY00.0170.00410.511-0.035-0.0350.0000.0000.0000.000
72A199TYR0-0.008-0.00310.6900.0930.0930.0000.0000.0000.000
73A200PHE00.004-0.00612.731-0.070-0.0700.0000.0000.0000.000
74A201HIS0-0.037-0.01914.5000.0530.0530.0000.0000.0000.000
75A202ASP-1-0.740-0.85316.9770.6350.6350.0000.0000.0000.000
76A203ALA0-0.004-0.00819.726-0.010-0.0100.0000.0000.0000.000
77A204THR0-0.014-0.00919.984-0.007-0.0070.0000.0000.0000.000
78A205ARG10.9130.96814.769-0.762-0.7620.0000.0000.0000.000
79A206VAL00.004-0.00712.823-0.088-0.0880.0000.0000.0000.000
80A207TYR0-0.047-0.03410.7160.2170.2170.0000.0000.0000.000
81A208LEU00.003-0.0047.014-0.166-0.1660.0000.0000.0000.000
82A209ILE00.0070.0157.0890.3400.3400.0000.0000.0000.000
83A210LEU0-0.004-0.0163.134-1.411-0.1490.086-0.421-0.9270.002
84A211GLU-1-0.761-0.8684.716-0.521-0.218-0.001-0.076-0.2260.000
85A212TYR0-0.039-0.0242.379-11.033-5.5662.455-2.998-4.925-0.013
86A213ALA00.0500.0332.233-6.360-5.0504.902-2.232-3.9810.022
87A214PRO0-0.007-0.0081.719-21.307-24.42114.353-6.348-4.891-0.074
88A215LEU0-0.006-0.0073.194-2.471-0.9660.110-0.664-0.951-0.006
89A216GLY0-0.043-0.0042.665-0.1051.0536.023-3.222-3.9590.006
90A217THR00.016-0.0092.522-2.288-4.2667.1562.177-7.3560.000
91A218VAL00.0970.0415.278-0.925-0.6640.000-0.024-0.2370.000
92A219TYR00.0120.0182.401-3.272-1.4203.427-0.931-4.347-0.008
93A220ARG10.9070.9583.990-1.323-0.6360.020-0.091-0.6160.000
94A221GLU-1-0.826-0.9035.359-0.738-0.599-0.001-0.005-0.1340.000
95A222LEU00.0490.0248.747-0.133-0.1330.0000.0000.0000.000
96A223GLN0-0.036-0.0184.8450.0150.0150.0000.0000.0000.000
97A224LYS10.8130.9106.2740.5600.5600.0000.0000.0000.000
98A225LEU00.0190.00610.6330.0160.0160.0000.0000.0000.000
99A226SER0-0.077-0.00612.1040.0230.0230.0000.0000.0000.000
100A227LYS10.9430.96113.4910.3060.3060.0000.0000.0000.000
101A228PHE0-0.032-0.01511.4430.0150.0150.0000.0000.0000.000
102A229ASP-1-0.859-0.92716.957-0.240-0.2400.0000.0000.0000.000
103A230GLU-1-0.786-0.89620.296-0.196-0.1960.0000.0000.0000.000
104A231GLN00.0640.04222.6060.0000.0000.0000.0000.0000.000
105A232ARG10.9080.98814.6420.2660.2660.0000.0000.0000.000
106A233THR0-0.038-0.02918.0700.0060.0060.0000.0000.0000.000
107A234ALA0-0.016-0.00719.1050.0130.0130.0000.0000.0000.000
108A235THR00.0590.02717.1370.0130.0130.0000.0000.0000.000
109A236TYR0-0.075-0.07112.7900.0040.0040.0000.0000.0000.000
110A237ILE0-0.027-0.01316.5470.0190.0190.0000.0000.0000.000
111A238THR00.0220.00118.4880.0140.0140.0000.0000.0000.000
112A239GLU-1-0.878-0.94314.369-0.157-0.1570.0000.0000.0000.000
113A240LEU0-0.017-0.01612.4040.0140.0140.0000.0000.0000.000
114A241ALA00.0030.00516.0430.0090.0090.0000.0000.0000.000
115A242ASN00.0260.00218.9160.0170.0170.0000.0000.0000.000
116A243ALA0-0.025-0.00214.8190.0100.0100.0000.0000.0000.000
117A244LEU00.0420.00814.9550.0120.0120.0000.0000.0000.000
118A245SER0-0.0050.00317.8540.0080.0080.0000.0000.0000.000
119A246TYR0-0.0100.00116.3580.0130.0130.0000.0000.0000.000
120A247CYS0-0.028-0.00815.3430.0110.0110.0000.0000.0000.000
121A248HIS00.0510.02818.9780.0090.0090.0000.0000.0000.000
122A249SER0-0.108-0.05721.9920.0070.0070.0000.0000.0000.000
123A250LYS10.8990.94719.225-0.035-0.0350.0000.0000.0000.000
124A251ARG10.8490.93022.1940.0110.0110.0000.0000.0000.000
125A252VAL0-0.036-0.00616.3630.0110.0110.0000.0000.0000.000
126A253ILE0-0.0140.00417.979-0.010-0.0100.0000.0000.0000.000
127A254HIS00.0160.00011.3230.0190.0190.0000.0000.0000.000
128A255ARG10.8790.94913.7740.0240.0240.0000.0000.0000.000
129A256ASP-1-0.824-0.95111.010-0.275-0.2750.0000.0000.0000.000
130A257ILE00.0200.03210.2330.0470.0470.0000.0000.0000.000
131A258LYS10.8860.9566.4900.3800.3800.0000.0000.0000.000
132A259PRO00.0930.0477.4450.3280.3280.0000.0000.0000.000
133A260GLU-1-0.938-0.9882.799-4.849-2.6081.615-1.000-2.8560.003
134A261ASN0-0.101-0.0472.548-2.0881.4541.852-1.613-3.781-0.017
135A262LEU00.0370.0374.327-0.594-0.424-0.001-0.017-0.1520.000
136A263LEU0-0.029-0.0282.706-4.343-0.4795.043-1.432-7.4750.007
137A264LEU00.0340.0365.206-0.347-0.3470.0000.0000.0000.000
138A265GLY00.013-0.0105.249-1.160-1.1600.0000.0000.0000.000
139A266SER0-0.085-0.0537.407-0.026-0.0260.0000.0000.0000.000
140A267ALA00.0020.0109.0330.0290.0290.0000.0000.0000.000
141A268GLY0-0.034-0.01510.0160.0660.0660.0000.0000.0000.000
142A269GLU-1-0.849-0.91410.347-0.375-0.3750.0000.0000.0000.000
143A270LEU00.0480.0339.507-0.046-0.0460.0000.0000.0000.000
144A271LYS10.7530.8677.2910.2170.2170.0000.0000.0000.000
145A272ILE00.0300.0147.8500.1410.1410.0000.0000.0000.000
146A273ALA0-0.002-0.0043.915-0.445-0.1160.002-0.039-0.2930.000
147A274ASP-1-0.950-0.9755.805-0.017-0.0170.0000.0000.0000.000
148A275PHE0-0.017-0.0166.6790.0500.0500.0000.0000.0000.000
149A276GLY00.0570.04210.157-0.001-0.0010.0000.0000.0000.000
150A277TRP0-0.072-0.05613.7690.0170.0170.0000.0000.0000.000
151A278SER00.015-0.00316.802-0.015-0.0150.0000.0000.0000.000
152A279VAL0-0.059-0.01020.3590.0100.0100.0000.0000.0000.000
153A280HIS00.0130.01823.3460.0010.0010.0000.0000.0000.000
154A281ALA00.009-0.00225.5170.0080.0080.0000.0000.0000.000
155A282PRO00.0300.02827.184-0.009-0.0090.0000.0000.0000.000
156A283SER0-0.030-0.02828.3240.0050.0050.0000.0000.0000.000
157A284SER00.0290.01230.442-0.004-0.0040.0000.0000.0000.000
158A285ARG10.9110.94126.7240.0740.0740.0000.0000.0000.000
159A286ARG10.9991.02419.1640.0890.0890.0000.0000.0000.000
160A287THR00.0280.01622.007-0.019-0.0190.0000.0000.0000.000
161A288THR00.0300.00018.6120.0260.0260.0000.0000.0000.000
162A289LEU00.0140.02318.087-0.046-0.0460.0000.0000.0000.000
163A290CYS0-0.090-0.05713.8890.0490.0490.0000.0000.0000.000
164A291GLY0-0.0080.01611.5820.0050.0050.0000.0000.0000.000
165A292THR00.020-0.0058.2390.0920.0920.0000.0000.0000.000
166A293LEU00.027-0.00411.2270.1150.1150.0000.0000.0000.000
167A294ASP-1-0.875-0.93011.150-0.857-0.8570.0000.0000.0000.000
168A295TYR0-0.099-0.1068.683-0.003-0.0030.0000.0000.0000.000
169A296LEU0-0.024-0.00613.6820.0860.0860.0000.0000.0000.000
170A297PRO00.0040.00616.393-0.021-0.0210.0000.0000.0000.000
171A298PRO00.0630.00719.9780.0050.0050.0000.0000.0000.000
172A299GLU-1-0.762-0.86722.937-0.122-0.1220.0000.0000.0000.000
173A300MET0-0.060-0.01317.8740.0130.0130.0000.0000.0000.000
174A301ILE0-0.016-0.01118.6860.0130.0130.0000.0000.0000.000
175A302GLU-1-0.829-0.89521.393-0.146-0.1460.0000.0000.0000.000
176A303GLY0-0.101-0.03624.2420.0120.0120.0000.0000.0000.000
177A304ARG10.8770.93825.8090.1260.1260.0000.0000.0000.000
178A305MET0-0.028-0.00826.2360.0060.0060.0000.0000.0000.000
179A306HIS0-0.014-0.01321.230-0.016-0.0160.0000.0000.0000.000
180A307ASP-1-0.891-0.95623.502-0.039-0.0390.0000.0000.0000.000
181A308GLU-1-0.834-0.93622.118-0.032-0.0320.0000.0000.0000.000
182A309LYS10.8500.91621.8040.0740.0740.0000.0000.0000.000
183A310VAL0-0.0120.00318.268-0.016-0.0160.0000.0000.0000.000
184A311ASP-1-0.768-0.89317.328-0.067-0.0670.0000.0000.0000.000
185A312LEU0-0.049-0.02418.652-0.010-0.0100.0000.0000.0000.000
186A313TRP00.0210.01718.087-0.002-0.0020.0000.0000.0000.000
187A314SER00.006-0.00714.974-0.028-0.0280.0000.0000.0000.000
188A315LEU00.0290.01316.301-0.021-0.0210.0000.0000.0000.000
189A316GLY00.0180.00718.031-0.012-0.0120.0000.0000.0000.000
190A317VAL0-0.031-0.02114.218-0.028-0.0280.0000.0000.0000.000
191A318LEU00.0110.00111.609-0.052-0.0520.0000.0000.0000.000
192A319CYS0-0.0360.00415.359-0.024-0.0240.0000.0000.0000.000
193A320TYR0-0.012-0.03716.993-0.012-0.0120.0000.0000.0000.000
194A321GLU-1-0.800-0.85710.164-0.941-0.9410.0000.0000.0000.000
195A322PHE0-0.026-0.02212.144-0.028-0.0280.0000.0000.0000.000
196A323LEU00.0280.02815.531-0.010-0.0100.0000.0000.0000.000
197A324VAL0-0.092-0.05916.6870.0030.0030.0000.0000.0000.000
198A325GLY00.001-0.00213.376-0.010-0.0100.0000.0000.0000.000
199A326LYS10.9010.96212.1350.4940.4940.0000.0000.0000.000
200A327PRO00.0400.02811.4060.1560.1560.0000.0000.0000.000
201A328PRO00.0250.00514.305-0.020-0.0200.0000.0000.0000.000
202A329PHE0-0.053-0.04516.5230.0390.0390.0000.0000.0000.000
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