FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XRM8P

Calculation Name: 3OCG-A-Xray9

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 5-amino-n-[5-(isoxazol-3-ylcarbamoyl)-2-methylphenyl]-1-phenyl-1h-pyrazole-4-carboxamide

ligand 3-letter code: OCG

PDB ID: 3OCG

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-05-17

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:MMFF94x
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName OCG
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5794656.727029
FMO2-HF: Nuclear repulsion 5654345.401058
FMO2-HF: Total energy -140311.325972
FMO2-MP2: Total energy -140721.450193


3D Structure
Snapshot
 
Ligand structure

OCG

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.919-59.86187.954-34.806-88.2110.007


Interactive mode: IFIE and PIEDA for fragment #347(A:361:OCG)


Summations of interaction energy for fragment #347(A:361:OCG)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-94.919-59.86187.954-34.806-88.211-0.007
Interaction energy analysis for fragmet #347(A:361:OCG)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.009 / q_NPA : -0.018
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8430.90515.5700.4190.4190.0000.0000.0000.000
2A7THR00.0820.04918.5310.0100.0100.0000.0000.0000.000
3A8PHE00.0360.01512.885-0.038-0.0380.0000.0000.0000.000
4A9TYR0-0.018-0.01514.0980.0700.0700.0000.0000.0000.000
5A10ARG10.9610.97515.7520.2490.2490.0000.0000.0000.000
6A11GLN00.0230.00614.320-0.020-0.0200.0000.0000.0000.000
7A12GLU-1-0.948-0.97616.090-0.210-0.2100.0000.0000.0000.000
8A13LEU0-0.0120.00611.420-0.004-0.0040.0000.0000.0000.000
9A14ASN0-0.013-0.01111.0490.0070.0070.0000.0000.0000.000
10A15LYS10.9550.96815.2470.0520.0520.0000.0000.0000.000
11A16THR0-0.044-0.02713.050-0.011-0.0110.0000.0000.0000.000
12A17ILE00.0980.05515.421-0.009-0.0090.0000.0000.0000.000
13A18TRP0-0.0350.0056.426-0.092-0.0920.0000.0000.0000.000
14A19GLU-1-0.924-0.97612.567-0.357-0.3570.0000.0000.0000.000
15A20VAL00.0160.0149.308-0.093-0.0930.0000.0000.0000.000
16A21PRO0-0.027-0.00811.2440.1020.1020.0000.0000.0000.000
17A22GLU-1-0.869-0.94213.831-0.412-0.4120.0000.0000.0000.000
18A23ARG10.8150.91612.5080.8040.8040.0000.0000.0000.000
19A24TYR0-0.044-0.0369.352-0.054-0.0540.0000.0000.0000.000
20A25GLN00.011-0.00112.2440.0760.0760.0000.0000.0000.000
21A26ASN0-0.022-0.02812.964-0.064-0.0640.0000.0000.0000.000
22A27LEU00.0050.0129.605-0.041-0.0410.0000.0000.0000.000
23A28SER0-0.003-0.0059.3790.0110.0110.0000.0000.0000.000
24A29PRO0-0.026-0.0127.9380.0520.0520.0000.0000.0000.000
25A30VAL00.0030.0312.937-2.164-0.5120.428-0.625-1.4560.006
26A31GLY00.0280.0056.124-0.619-0.6190.0000.0000.0000.000
27A32SER0-0.078-0.0606.7980.5580.5580.0000.0000.0000.000
28A33GLY00.046-0.0037.6900.0760.0760.0000.0000.0000.000
29A34ALA0-0.061-0.02610.113-0.233-0.2330.0000.0000.0000.000
30A35TYR0-0.013-0.0136.537-0.261-0.2610.0000.0000.0000.000
31A36GLY00.0310.0057.089-0.570-0.5700.0000.0000.0000.000
32A37SER0-0.073-0.0256.7221.1691.1690.0000.0000.0000.000
33A38VAL00.0540.0252.846-4.468-1.2740.526-1.162-2.5580.013
34A39CYS0-0.061-0.0204.973-0.469-0.253-0.001-0.010-0.2050.000
35A40ALA00.0580.0424.789-0.495-0.389-0.001-0.009-0.0970.000
36A41ALA0-0.011-0.0136.234-0.009-0.0090.0000.0000.0000.000
37A42PHE0-0.0040.0109.237-0.007-0.0070.0000.0000.0000.000
38A43ASP-1-0.760-0.86810.495-0.826-0.8260.0000.0000.0000.000
39A44THR0-0.015-0.03312.2290.1160.1160.0000.0000.0000.000
40A45LYS10.8750.94114.9470.3820.3820.0000.0000.0000.000
41A46THR0-0.020-0.03012.3000.0750.0750.0000.0000.0000.000
42A47GLY00.0130.02915.3240.0600.0600.0000.0000.0000.000
43A48LEU00.0260.01610.3440.0330.0330.0000.0000.0000.000
44A49ARG10.9500.9837.4740.5200.5200.0000.0000.0000.000
45A50VAL0-0.003-0.0115.8500.2210.2210.0000.0000.0000.000
46A51ALA00.0060.0082.467-0.1501.4382.409-1.338-2.6600.007
47A52VAL0-0.007-0.0112.794-4.631-3.0020.680-0.802-1.507-0.009
48A53LYS10.8250.8822.371-0.2093.2396.957-3.255-7.1490.030
49A54LYS10.8760.9463.509-0.668-0.6170.0160.177-0.2450.001
50A55LEU00.002-0.0045.1650.5590.5590.0000.0000.0000.000
51A56SER0-0.028-0.0227.9210.1630.1630.0000.0000.0000.000
52A57ARG10.9130.95211.3010.0710.0710.0000.0000.0000.000
53A58PRO00.0610.04910.7330.0490.0490.0000.0000.0000.000
54A59PHE00.0630.01712.0260.0040.0040.0000.0000.0000.000
55A60GLN00.006-0.00415.0890.0740.0740.0000.0000.0000.000
56A61SER00.0080.00614.8950.0320.0320.0000.0000.0000.000
57A62ILE00.0910.03715.152-0.050-0.0500.0000.0000.0000.000
58A63ILE00.0120.00412.012-0.033-0.0330.0000.0000.0000.000
59A64HIS0-0.081-0.04910.583-0.034-0.0340.0000.0000.0000.000
60A65ALA00.0390.04410.244-0.177-0.1770.0000.0000.0000.000
61A66LYS10.8990.95310.767-0.054-0.0540.0000.0000.0000.000
62A67ARG10.7600.9146.0390.2300.2300.0000.0000.0000.000
63A68THR00.004-0.0216.201-0.537-0.5370.0000.0000.0000.000
64A69TYR0-0.0100.0087.519-0.125-0.1250.0000.0000.0000.000
65A70ARG10.7790.8514.4670.5750.698-0.001-0.008-0.1140.000
66A71GLU-1-0.758-0.8541.853-24.507-30.00719.750-5.468-8.782-0.047
67A72LEU0-0.0030.0034.2971.0941.2660.0000.006-0.1780.000
68A73ARG10.8930.9527.283-0.061-0.0610.0000.0000.0000.000
69A74LEU0-0.019-0.0112.272-1.244-0.1850.977-0.499-1.5370.003
70A75LEU0-0.031-0.0172.213-2.7820.0912.711-1.068-4.5160.004
71A76LYS10.7540.8585.680-0.454-0.438-0.001-0.001-0.0130.000
72A77HIS0-0.046-0.0118.505-0.256-0.2560.0000.0000.0000.000
73A78MET0-0.0490.0096.366-0.569-0.5690.0000.0000.0000.000
74A79LYS10.9160.9438.879-1.276-1.2760.0000.0000.0000.000
75A80HIS00.0620.04010.938-0.008-0.0080.0000.0000.0000.000
76A81GLU-1-0.827-0.90211.3231.3241.3240.0000.0000.0000.000
77A82ASN00.0160.00811.522-0.087-0.0870.0000.0000.0000.000
78A83VAL0-0.028-0.0126.3350.6130.6130.0000.0000.0000.000
79A84ILE0-0.073-0.0172.414-5.025-2.4762.246-1.206-3.5880.013
80A85GLY00.0630.0315.8651.2161.2160.0000.0000.0000.000
81A86LEU0-0.075-0.0404.889-1.481-1.4810.0000.0000.0000.000
82A87LEU0-0.026-0.0156.5050.2310.2310.0000.0000.0000.000
83A88ASP-1-0.833-0.9107.207-0.726-0.7260.0000.0000.0000.000
84A89VAL0-0.0020.0096.822-0.645-0.6450.0000.0000.0000.000
85A90PHE0-0.0130.0017.9200.3160.3160.0000.0000.0000.000
86A91THR0-0.006-0.04310.098-0.099-0.0990.0000.0000.0000.000
87A92PRO00.0010.01012.9350.0320.0320.0000.0000.0000.000
88A93ALA0-0.0230.01115.6990.0530.0530.0000.0000.0000.000
89A94ARG10.9040.91217.9450.2390.2390.0000.0000.0000.000
90A95SER0-0.0170.00520.6320.0280.0280.0000.0000.0000.000
91A96LEU00.0620.02319.221-0.032-0.0320.0000.0000.0000.000
92A97GLU-1-0.939-0.97120.564-0.156-0.1560.0000.0000.0000.000
93A98GLU-1-0.900-0.93020.171-0.273-0.2730.0000.0000.0000.000
94A99PHE0-0.065-0.01712.758-0.036-0.0360.0000.0000.0000.000
95A100ASN0-0.013-0.03216.0710.0260.0260.0000.0000.0000.000
96A101ASP-1-0.930-0.94812.223-0.481-0.4810.0000.0000.0000.000
97A102VAL00.0130.0037.3010.0300.0300.0000.0000.0000.000
98A103TYR00.0180.0136.4950.0810.0810.0000.0000.0000.000
99A104LEU00.0160.0082.129-1.369-0.2841.764-0.647-2.202-0.001
100A105VAL00.0100.0112.585-3.932-2.2010.931-0.995-1.666-0.014
101A106THR00.0760.0422.133-11.437-8.1727.979-3.295-7.949-0.028
102A107HIS00.0660.0263.822-0.3050.281-0.001-0.024-0.5600.000
103A108LEU0-0.078-0.0382.091-10.002-7.1124.703-2.530-5.064-0.010
104A109MET0-0.020-0.0012.032-10.380-11.32011.009-3.384-6.6850.034
105A110GLY0-0.006-0.0013.241-3.567-1.8941.294-0.805-2.162-0.006
106A111ALA00.0010.0002.303-4.565-3.1871.664-1.139-1.903-0.002
107A112ASP-1-0.879-0.9302.231-5.170-4.3351.6150.092-2.542-0.008
108A113LEU00.050-0.0023.3451.0381.1090.0360.110-0.2170.000
109A114ASN0-0.038-0.0106.2910.6840.6840.0000.0000.0000.000
110A115ASN0-0.076-0.0335.3420.5620.5620.0000.0000.0000.000
111A116ILE00.0820.0407.2530.4310.4310.0000.0000.0000.000
112A117VAL0-0.0070.0049.6090.1910.1910.0000.0000.0000.000
113A118LYS10.8970.96510.9541.0051.0050.0000.0000.0000.000
114A119CYS0-0.103-0.05210.2660.1580.1580.0000.0000.0000.000
115A120GLN00.0440.02113.064-0.020-0.0200.0000.0000.0000.000
116A121LYS10.9220.96415.1840.2620.2620.0000.0000.0000.000
117A122LEU00.0160.01312.8760.0150.0150.0000.0000.0000.000
118A123THR00.0260.01417.1460.0410.0410.0000.0000.0000.000
119A124ASP-1-0.752-0.88319.1010.1740.1740.0000.0000.0000.000
120A125ASP-1-0.845-0.90420.2570.1800.1800.0000.0000.0000.000
121A126HIS00.0290.02712.4710.0590.0590.0000.0000.0000.000
122A127VAL00.003-0.01515.9990.0490.0490.0000.0000.0000.000
123A128GLN0-0.050-0.02516.9260.1100.1100.0000.0000.0000.000
124A129PHE00.1070.05715.0700.1020.1020.0000.0000.0000.000
125A130LEU0-0.027-0.00210.7160.1300.1300.0000.0000.0000.000
126A131ILE0-0.022-0.03614.0470.2130.2130.0000.0000.0000.000
127A132TYR0-0.030-0.01816.2690.1930.1930.0000.0000.0000.000
128A133GLN00.0540.02213.1840.2650.2650.0000.0000.0000.000
129A134ILE0-0.036-0.01711.6690.3340.3340.0000.0000.0000.000
130A135LEU0-0.029-0.02213.7090.3050.3050.0000.0000.0000.000
131A136ARG10.8230.90915.842-0.971-0.9710.0000.0000.0000.000
132A137GLY00.0190.00911.9080.0640.0640.0000.0000.0000.000
133A138LEU0-0.026-0.02810.3200.3060.3060.0000.0000.0000.000
134A139LYS10.8660.94312.342-1.013-1.0130.0000.0000.0000.000
135A140TYR00.0740.0569.8950.0450.0450.0000.0000.0000.000
136A141ILE0-0.015-0.0247.072-0.002-0.0020.0000.0000.0000.000
137A142HIS0-0.102-0.07810.081-0.379-0.3790.0000.0000.0000.000
138A143SER0-0.043-0.00212.894-0.250-0.2500.0000.0000.0000.000
139A144ALA00.0140.01010.640-0.164-0.1640.0000.0000.0000.000
140A145ASP-1-0.990-0.99412.4490.8090.8090.0000.0000.0000.000
141A146ILE0-0.022-0.0036.404-0.064-0.0640.0000.0000.0000.000
142A147ILE0-0.048-0.0349.3290.0830.0830.0000.0000.0000.000
143A148HIS00.0110.0126.820-0.752-0.7520.0000.0000.0000.000
144A149ARG10.8830.9347.472-1.040-1.0400.0000.0000.0000.000
145A150ASP-1-0.864-0.9358.9591.0021.0020.0000.0000.0000.000
146A151LEU00.0300.0409.7510.2330.2330.0000.0000.0000.000
147A152LYS10.8120.8969.709-1.573-1.5730.0000.0000.0000.000
148A153PRO00.0490.0208.7110.2400.2400.0000.0000.0000.000
149A154SER00.0150.0045.565-0.461-0.4610.0000.0000.0000.000
150A155ASN0-0.076-0.0405.030-1.212-0.982-0.001-0.008-0.2210.000
151A156LEU00.0100.0266.2472.0282.0280.0000.0000.0000.000
152A157ALA00.022-0.0022.620-2.649-1.8000.463-0.313-0.9990.000
153A158VAL00.0320.0094.5981.0791.250-0.001-0.013-0.1580.000
154A159ASN0-0.012-0.0116.1970.1630.1630.0000.0000.0000.000
155A160GLU-1-0.930-1.0057.430-1.423-1.4230.0000.0000.0000.000
156A161ASP-1-0.869-0.93510.541-0.008-0.0080.0000.0000.0000.000
157A162CYS0-0.114-0.04211.309-0.171-0.1710.0000.0000.0000.000
158A163GLU-1-0.920-0.92411.8440.9990.9990.0000.0000.0000.000
159A164LEU0-0.030-0.0248.5770.0540.0540.0000.0000.0000.000
160A165LYS10.8510.9026.398-1.651-1.6510.0000.0000.0000.000
161A166ILE0-0.028-0.0026.538-0.319-0.3190.0000.0000.0000.000
162A167LEU0-0.035-0.0322.548-3.8790.1583.178-1.592-5.6240.011
163A168ASP-1-0.847-0.9202.32722.30119.08014.644-2.783-8.6410.001
164A169PHE00.0400.0013.007-8.211-5.0480.596-0.543-3.2160.003
165A170GLY00.0860.0463.171-3.473-2.3880.055-0.311-0.8290.000
166A171LEU00.0060.0133.626-1.390-0.8840.011-0.124-0.394-0.001
167A172ALA00.013-0.0442.223-4.390-2.5791.312-1.034-2.090-0.008
168A173ARG10.6910.8223.405-4.123-3.4460.007-0.200-0.4840.001
169A174HIS00.1240.0625.4720.2770.2770.0000.0000.0000.000
170A175THR0-0.016-0.0148.691-0.116-0.1160.0000.0000.0000.000
171A176ASP-1-0.804-0.8878.8150.9750.9750.0000.0000.0000.000
172A177ASP-1-0.755-0.8659.7421.1911.1910.0000.0000.0000.000
173A178GLU-1-0.799-0.86212.9220.4170.4170.0000.0000.0000.000
174A179MET0-0.048-0.01814.690-0.086-0.0860.0000.0000.0000.000
175A180THR0-0.060-0.03814.125-0.080-0.0800.0000.0000.0000.000
176A181GLY00.0310.01014.691-0.025-0.0250.0000.0000.0000.000
177A182TYR0-0.0010.0096.917-0.054-0.0540.0000.0000.0000.000
178A183VAL00.0330.02912.6960.0390.0390.0000.0000.0000.000
179A184ALA0-0.010-0.02413.058-0.029-0.0290.0000.0000.0000.000
180A185THR0-0.110-0.02813.025-0.058-0.0580.0000.0000.0000.000
181A186ARG10.9100.93215.046-0.272-0.2720.0000.0000.0000.000
182A187TRP0-0.036-0.01815.2460.0150.0150.0000.0000.0000.000
183A188TYR0-0.016-0.03013.537-0.020-0.0200.0000.0000.0000.000
184A189ARG10.8000.88312.200-0.697-0.6970.0000.0000.0000.000
185A190ALA00.0490.02317.158-0.074-0.0740.0000.0000.0000.000
186A191PRO00.0020.00519.166-0.029-0.0290.0000.0000.0000.000
187A192GLU-1-0.725-0.87419.7310.5330.5330.0000.0000.0000.000
188A193ILE0-0.057-0.03414.681-0.023-0.0230.0000.0000.0000.000
189A194MET0-0.058-0.00218.613-0.003-0.0030.0000.0000.0000.000
190A195LEU0-0.061-0.03420.919-0.037-0.0370.0000.0000.0000.000
191A196ASN0-0.034-0.03421.525-0.006-0.0060.0000.0000.0000.000
192A197TRP00.0230.00718.683-0.016-0.0160.0000.0000.0000.000
193A198MET00.0050.06520.610-0.016-0.0160.0000.0000.0000.000
194A199HIS0-0.050-0.04121.804-0.008-0.0080.0000.0000.0000.000
195A200TYR0-0.002-0.01313.281-0.027-0.0270.0000.0000.0000.000
196A201ASN00.0560.04417.7580.0500.0500.0000.0000.0000.000
197A202GLN00.0890.01813.663-0.030-0.0300.0000.0000.0000.000
198A203THR0-0.045-0.03515.1620.1210.1210.0000.0000.0000.000
199A204VAL0-0.032-0.01413.670-0.061-0.0610.0000.0000.0000.000
200A205ASP-1-0.675-0.81611.3562.0382.0380.0000.0000.0000.000
201A206ILE0-0.029-0.01014.258-0.010-0.0100.0000.0000.0000.000
202A207TRP00.0240.02117.612-0.102-0.1020.0000.0000.0000.000
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