FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XRQ8P

Calculation Name: 3HV4-B-Xray9

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 1-{3-[(6-aminoquinolin-4-yl)amino]phenyl}-3-[3-tert-butyl-1-(4-methylphenyl)-1h-pyrazol-5-yl]urea

ligand 3-letter code: L51

PDB ID: 3HV4

Chain ID: B

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-05-17

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:MMFF94x
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName L51
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5773695.126458
FMO2-HF: Nuclear repulsion 5633130.700752
FMO2-HF: Total energy -140564.425707
FMO2-MP2: Total energy -140975.584921


3D Structure
Snapshot
 
Ligand structure

L51

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-126.057-83.53099.546-41.167-100.9050.016


Interactive mode: IFIE and PIEDA for fragment #347(B:361:L51)


Summations of interaction energy for fragment #347(B:361:L51)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-126.057-83.5399.546-41.167-100.905-0.016
Interaction energy analysis for fragmet #347(B:361:L51)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.016 / q_NPA : -0.038
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1B6PRO10.8560.90615.8550.2530.2530.0000.0000.0000.000
2B7THR00.0940.05818.957-0.042-0.0420.0000.0000.0000.000
3B8PHE00.0520.01813.6830.0310.0310.0000.0000.0000.000
4B9TYR0-0.035-0.01414.9490.0070.0070.0000.0000.0000.000
5B10ARG10.9620.98217.1500.3460.3460.0000.0000.0000.000
6B11GLN00.0490.00515.638-0.009-0.0090.0000.0000.0000.000
7B12GLU-1-0.929-0.95017.447-0.372-0.3720.0000.0000.0000.000
8B13LEU00.0420.02412.3570.0580.0580.0000.0000.0000.000
9B14ASN0-0.0040.00211.069-0.118-0.1180.0000.0000.0000.000
10B15LYS10.8900.92613.8970.2700.2700.0000.0000.0000.000
11B16THR0-0.044-0.01513.091-0.095-0.0950.0000.0000.0000.000
12B17ILE00.0170.01515.3020.0850.0850.0000.0000.0000.000
13B18TRP0-0.017-0.0337.764-0.099-0.0990.0000.0000.0000.000
14B19GLU-1-0.904-0.96113.678-0.323-0.3230.0000.0000.0000.000
15B20VAL00.0070.00910.968-0.100-0.1000.0000.0000.0000.000
16B21PRO0-0.023-0.00111.8620.0570.0570.0000.0000.0000.000
17B22GLU-1-0.876-0.96014.5310.0670.0670.0000.0000.0000.000
18B23ARG10.8070.93412.993-0.013-0.0130.0000.0000.0000.000
19B24TYR0-0.021-0.02210.0920.1360.1360.0000.0000.0000.000
20B25GLN0-0.0050.00413.069-0.097-0.0970.0000.0000.0000.000
21B26ASN0-0.034-0.03213.2630.1890.1890.0000.0000.0000.000
22B27LEU00.0410.01210.3490.1790.1790.0000.0000.0000.000
23B28SER00.0060.0178.411-0.353-0.3530.0000.0000.0000.000
24B29PRO0-0.033-0.0337.9360.5350.5350.0000.0000.0000.000
25B30VAL0-0.007-0.0023.059-2.034-0.2781.000-0.707-2.0490.008
26B31GLY00.0150.0152.954-5.549-3.6140.164-1.025-1.075-0.001
27B32SER0-0.002-0.0153.9201.0701.2130.001-0.004-0.1400.000
28B33GLY00.0390.0256.681-0.384-0.3840.0000.0000.0000.000
29B34ALA0-0.024-0.0148.8420.0820.0820.0000.0000.0000.000
30B35TYR0-0.007-0.0103.7930.1260.4730.001-0.031-0.3180.000
31B36GLY00.0390.0116.795-0.483-0.4830.0000.0000.0000.000
32B37SER0-0.063-0.0136.337-0.284-0.2840.0000.0000.0000.000
33B38VAL00.0430.0252.338-4.720-1.1212.023-1.362-4.2600.016
34B39CYS0-0.064-0.0095.543-0.610-0.6100.0000.0000.0000.000
35B40ALA00.0600.0335.4560.6780.6780.0000.0000.0000.000
36B41ALA0-0.011-0.0056.813-0.923-0.9230.0000.0000.0000.000
37B42PHE0-0.042-0.0139.2620.2710.2710.0000.0000.0000.000
38B43ASP-1-0.700-0.82710.9030.1890.1890.0000.0000.0000.000
39B44THR0-0.015-0.00312.640-0.049-0.0490.0000.0000.0000.000
40B45LYS10.8990.95815.544-0.067-0.0670.0000.0000.0000.000
41B46THR0-0.017-0.05612.8890.0110.0110.0000.0000.0000.000
42B47GLY0-0.048-0.01814.6220.0080.0080.0000.0000.0000.000
43B48LEU00.0380.0229.5580.0930.0930.0000.0000.0000.000
44B49ARG10.9440.9687.705-1.564-1.5640.0000.0000.0000.000
45B50VAL0-0.002-0.0075.7090.0000.0000.0000.0000.0000.000
46B51ALA0-0.003-0.0012.660-1.2620.2453.735-1.628-3.6150.013
47B52VAL00.0060.0113.734-3.333-2.4900.014-0.252-0.605-0.001
48B53LYS10.8480.8952.4358.54114.4383.348-2.906-6.3390.035
49B54LYS10.8730.9614.369-0.481-0.2850.001-0.039-0.1580.000
50B55LEU00.0240.0095.346-0.007-0.0070.0000.0000.0000.000
51B56SER0-0.033-0.0088.2720.6540.6540.0000.0000.0000.000
52B57ARG10.8820.9149.2610.8600.8600.0000.0000.0000.000
53B58PRO00.0530.0458.4410.0910.0910.0000.0000.0000.000
54B59PHE00.0390.0119.1400.0570.0570.0000.0000.0000.000
55B60GLN00.0260.02011.9450.1170.1170.0000.0000.0000.000
56B61SER0-0.0010.00310.9250.1030.1030.0000.0000.0000.000
57B62ILE00.1010.04511.435-0.077-0.0770.0000.0000.0000.000
58B63ILE00.0290.0087.011-0.039-0.0390.0000.0000.0000.000
59B64HIS0-0.116-0.0556.6040.0740.0740.0000.0000.0000.000
60B65ALA00.0680.0396.593-0.288-0.2880.0000.0000.0000.000
61B66LYS10.8440.9246.2270.0100.0100.0000.0000.0000.000
62B67ARG10.8930.9502.608-0.4420.6311.035-0.455-1.6520.004
63B68THR0-0.0040.0042.887-2.174-1.2960.507-0.384-1.001-0.009
64B69TYR00.0350.0285.418-0.416-0.4160.0000.0000.0000.000
65B70ARG10.9540.9722.621-4.857-2.4081.606-0.945-3.1100.003
66B71GLU-1-0.738-0.8351.651-46.328-64.20645.831-13.281-14.673-0.093
67B72LEU0-0.0070.0123.392-0.387-0.8560.1231.036-0.6890.001
68B73ARG10.9140.9517.0900.9920.9920.0000.0000.0000.000
69B74LEU00.0220.0121.987-1.651-0.3422.889-0.797-3.401-0.005
70B75LEU00.011-0.0202.343-2.967-1.3886.872-1.579-6.8720.005
71B76LYS10.7910.8645.4771.5821.5820.0000.0000.0000.000
72B77HIS0-0.114-0.0687.3270.1920.1920.0000.0000.0000.000
73B78MET0-0.084-0.0162.586-0.7850.1010.692-0.232-1.3460.000
74B79LYS10.8880.9276.0110.2390.2390.0000.0000.0000.000
75B80HIS00.1300.0657.2980.0370.0370.0000.0000.0000.000
76B81GLU-1-0.845-0.9138.6030.7290.7290.0000.0000.0000.000
77B82ASN0-0.014-0.0098.6670.0520.0520.0000.0000.0000.000
78B83VAL0-0.027-0.0063.004-0.6930.0770.296-0.158-0.9080.000
79B84ILE0-0.056-0.0142.347-3.543-0.8181.367-0.870-3.2220.004
80B85GLY00.0440.0294.331-0.850-0.6030.000-0.026-0.2210.000
81B86LEU0-0.041-0.0444.498-0.1720.048-0.001-0.009-0.2100.000
82B87LEU0-0.017-0.0106.4610.1960.1960.0000.0000.0000.000
83B88ASP-1-0.855-0.9216.964-0.411-0.4110.0000.0000.0000.000
84B89VAL0-0.0210.0166.614-0.587-0.5870.0000.0000.0000.000
85B90PHE00.008-0.0018.5030.3040.3040.0000.0000.0000.000
86B91THR0-0.039-0.04510.550-0.149-0.1490.0000.0000.0000.000
87B92PRO00.0050.00813.3480.0760.0760.0000.0000.0000.000
88B93ALA0-0.034-0.00216.2500.0610.0610.0000.0000.0000.000
89B94ARG10.9250.96218.2280.3580.3580.0000.0000.0000.000
90B95SER0-0.072-0.03621.0040.0330.0330.0000.0000.0000.000
91B96LEU00.0640.03217.785-0.052-0.0520.0000.0000.0000.000
92B97GLU-1-0.896-0.95619.412-0.454-0.4540.0000.0000.0000.000
93B98GLU-1-0.941-0.96321.091-0.438-0.4380.0000.0000.0000.000
94B99PHE00.0240.02512.769-0.055-0.0550.0000.0000.0000.000
95B100ASN0-0.082-0.07915.0680.0120.0120.0000.0000.0000.000
96B101ASP-1-0.885-0.93213.079-0.992-0.9920.0000.0000.0000.000
97B102VAL0-0.021-0.0218.3100.0980.0980.0000.0000.0000.000
98B103TYR00.0130.0087.081-0.233-0.2330.0000.0000.0000.000
99B104LEU00.008-0.0032.947-1.541-0.0800.321-0.403-1.3800.000
100B105VAL00.0130.0243.125-1.411-0.0780.111-0.624-0.819-0.007
101B106THR00.0180.0112.029-2.813-0.5542.663-1.315-3.607-0.003
102B107HIS00.1080.0494.9550.2170.556-0.001-0.032-0.3060.000
103B108LEU0-0.076-0.0282.623-7.301-2.9321.887-2.255-4.0010.002
104B109MET00.000-0.0022.177-8.848-6.2283.950-2.044-4.5260.012
105B110GLY0-0.031-0.0113.2320.5281.9670.145-0.455-1.128-0.003
106B111ALA00.0120.0105.178-0.347-0.269-0.001-0.003-0.0740.000
107B112ASP-1-0.823-0.9077.1641.0901.0900.0000.0000.0000.000
108B113LEU00.0350.0068.651-0.305-0.3050.0000.0000.0000.000
109B114ASN00.0130.00211.410-0.275-0.2750.0000.0000.0000.000
110B115ASN0-0.042-0.0268.7690.0670.0670.0000.0000.0000.000
111B116ILE00.0560.02312.362-0.045-0.0450.0000.0000.0000.000
112B117VAL0-0.051-0.01615.057-0.054-0.0540.0000.0000.0000.000
113B118LYS10.8580.93213.920-0.099-0.0990.0000.0000.0000.000
114B119CYS0-0.036-0.00416.873-0.036-0.0360.0000.0000.0000.000
115B120GLN00.0490.02518.830-0.026-0.0260.0000.0000.0000.000
116B121LYS10.8160.91721.559-0.299-0.2990.0000.0000.0000.000
117B122LEU0-0.031-0.00718.883-0.016-0.0160.0000.0000.0000.000
118B123THR00.0530.02323.198-0.025-0.0250.0000.0000.0000.000
119B124ASP-1-0.756-0.89423.5740.3330.3330.0000.0000.0000.000
120B125ASP-1-0.869-0.92222.9680.4170.4170.0000.0000.0000.000
121B126HIS00.021-0.00818.214-0.021-0.0210.0000.0000.0000.000
122B127VAL0-0.032-0.02319.0540.0550.0550.0000.0000.0000.000
123B128GLN0-0.053-0.02518.0480.0450.0450.0000.0000.0000.000
124B129PHE00.0770.04417.5890.0260.0260.0000.0000.0000.000
125B130LEU0-0.004-0.00614.5020.0590.0590.0000.0000.0000.000
126B131ILE0-0.029-0.03513.4030.0560.0560.0000.0000.0000.000
127B132TYR0-0.031-0.02913.3710.0420.0420.0000.0000.0000.000
128B133GLN00.0400.00611.5950.0780.0780.0000.0000.0000.000
129B134ILE0-0.047-0.0098.5100.0590.0590.0000.0000.0000.000
130B135LEU0-0.004-0.0028.7150.0050.0050.0000.0000.0000.000
131B136ARG10.8390.91010.912-0.583-0.5830.0000.0000.0000.000
132B137GLY00.0280.0076.982-0.039-0.0390.0000.0000.0000.000
133B138LEU0-0.032-0.0315.986-0.091-0.0910.0000.0000.0000.000
134B139LYS10.8810.9467.677-0.355-0.3550.0000.0000.0000.000
135B140TYR00.0290.0355.575-0.019-0.0190.0000.0000.0000.000
136B141ILE00.0230.0232.357-1.440-0.4221.442-0.346-2.114-0.003
137B142HIS0-0.102-0.0635.584-0.027-0.0270.0000.0000.0000.000
138B143SER0-0.074-0.0378.352-0.067-0.0670.0000.0000.0000.000
139B144ALA00.019-0.0017.119-0.074-0.0740.0000.0000.0000.000
140B145ASP-1-0.930-0.9579.2780.3270.3270.0000.0000.0000.000
141B146ILE0-0.072-0.0213.050-0.4700.1410.098-0.103-0.6050.000
142B147ILE0-0.078-0.0536.225-0.131-0.1310.0000.0000.0000.000
143B148HIS00.0240.0022.471-1.4520.1981.427-0.653-2.424-0.001
144B149ARG10.8990.9434.298-1.431-1.2950.000-0.003-0.1320.000
145B150ASP-1-0.849-0.9076.045-0.611-0.6110.0000.0000.0000.000
146B151LEU00.0630.0435.838-0.019-0.0190.0000.0000.0000.000
147B152LYS10.8100.8507.8290.2230.2230.0000.0000.0000.000
148B153PRO00.0350.0129.3010.2140.2140.0000.0000.0000.000
149B154SER00.0230.0058.0440.2010.2010.0000.0000.0000.000
150B155ASN0-0.029-0.0045.2850.1130.1130.0000.0000.0000.000
151B156LEU0-0.056-0.0195.8270.6470.6470.0000.0000.0000.000
152B157ALA00.0380.0195.821-0.114-0.1140.0000.0000.0000.000
153B158VAL0-0.036-0.0287.882-0.262-0.2620.0000.0000.0000.000
154B159ASN0-0.0010.0129.7950.0010.0010.0000.0000.0000.000
155B160GLU-1-0.930-0.98911.0281.2211.2210.0000.0000.0000.000
156B161ASP-1-0.893-0.93214.3910.6920.6920.0000.0000.0000.000
157B162CYS0-0.103-0.02914.702-0.097-0.0970.0000.0000.0000.000
158B163GLU-1-0.894-0.93012.9170.8730.8730.0000.0000.0000.000
159B164LEU0-0.032-0.0218.5710.2270.2270.0000.0000.0000.000
160B165LYS10.8630.9426.599-1.563-1.5630.0000.0000.0000.000
161B166ILE0-0.019-0.0152.495-0.2480.2060.730-0.169-1.0150.000
162B167LEU0-0.049-0.0352.035-3.394-0.4865.421-3.057-5.2720.006
163B168ASP-1-0.881-0.9442.365-10.402-6.3943.398-0.401-7.0050.010
164B169PHE00.017-0.0052.801-11.965-5.3924.101-2.669-8.004-0.008
165B170GLY0-0.0130.0203.606-3.238-2.3730.007-0.258-0.615-0.002
166B171LEU0-0.021-0.0212.029-2.227-1.8332.343-0.723-2.0140.001
167B172ALA0-0.033-0.0386.1020.7760.7760.0000.0000.0000.000
168B173ARG10.8070.8438.4631.3291.3290.0000.0000.0000.000
169B174HIS00.0400.0135.1730.6040.6040.0000.0000.0000.000
170B175THR0-0.0320.0299.1820.1330.1330.0000.0000.0000.000
171B176ASP-1-0.859-0.93910.240-0.160-0.1600.0000.0000.0000.000
172B177ASP-1-0.748-0.79913.153-0.648-0.6480.0000.0000.0000.000
173B178GLU-1-0.809-0.88814.110-0.352-0.3520.0000.0000.0000.000
174B179MET0-0.082-0.02810.3540.0600.0600.0000.0000.0000.000
175B180THR0-0.048-0.0479.280-0.116-0.1160.0000.0000.0000.000
176B181GLY00.0110.03912.2630.0190.0190.0000.0000.0000.000
177B182TYR00.000-0.01812.2020.0780.0780.0000.0000.0000.000
178B183VAL0-0.075-0.04711.4970.1020.1020.0000.0000.0000.000
179B184ALA00.0180.02912.640-0.085-0.0850.0000.0000.0000.000
180B185THR00.0340.02311.4870.0310.0310.0000.0000.0000.000
181B186ARG10.7260.81913.9760.3280.3280.0000.0000.0000.000
182B187TRP0-0.016-0.02116.8360.0450.0450.0000.0000.0000.000
183B188TYR0-0.061-0.08412.7590.0300.0300.0000.0000.0000.000
184B189ARG10.8590.9049.975-0.162-0.1620.0000.0000.0000.000
185B190ALA00.0320.01213.870-0.031-0.0310.0000.0000.0000.000
186B191PRO00.0130.01715.766-0.031-0.0310.0000.0000.0000.000
187B192GLU-1-0.729-0.84116.3600.2650.2650.0000.0000.0000.000
188B193ILE00.000-0.00512.126-0.021-0.0210.0000.0000.0000.000
189B194MET0-0.080-0.02616.350-0.041-0.0410.0000.0000.0000.000
190B195LEU0-0.075-0.02418.986-0.035-0.0350.0000.0000.0000.000
191B196ASN0-0.066-0.02717.5560.0000.0000.0000.0000.0000.000
192B197TRP0-0.0080.00318.490-0.021-0.0210.0000.0000.0000.000
193B198MET0-0.038-0.02417.6130.0090.0090.0000.0000.0000.000
194B199HIS00.0100.02216.5710.0420.0420.0000.0000.0000.000
195B200TYR00.019-0.02211.0000.0550.0550.0000.0000.0000.000
196B201ASN00.0490.01713.1090.0660.0660.0000.0000.0000.000
197B202GLN00.0890.0399.546-0.026-0.0260.0000.0000.0000.000
198B203THR00.0140.01410.6790.0700.0700.0000.0000.0000.000
199B204VAL0-0.059-0.03110.230-0.027-0.0270.0000.0000.0000.000
200B205ASP-1-0.716-0.8376.9411.2191.2190.0000.0000.0000.000
201B206ILE0-0.0100.00010.157-0.014-0.0140.0000.0000.0000.000
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