FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XRYZ8

Calculation Name: 2G1Y-A-Xray38

Preferred Name: Renin

Target Type: SINGLE PROTEIN

Ligand Name: 6-(2,4-diamino-6-ethylpyrimidin-5-yl)-4-(3-methoxypropyl)-2,2-dimethyl-2h-1,4-benzoxazin-3(4h)-one

ligand 3-letter code: 5IG

PDB ID: 2G1Y

Chain ID: A

ChEMBL ID: CHEMBL286

UniProt ID: P00797

Base Structure: X-ray

Registration Date: 2019-02-14

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20171228
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 331
LigandResidueName 5IG
LigandFragmentNumber 331
LigandCharge 5IG=1
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5197422.420158
FMO2-HF: Nuclear repulsion 5066863.245057
FMO2-HF: Total energy -130559.175101
FMO2-MP2: Total energy -130937.270881


3D Structure
Snapshot
 
Ligand structure

5IG

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-323.212-295.746107.309-47.438-87.3340.317


Interactive mode: IFIE and PIEDA for fragment #331(A:885:5IG)


Summations of interaction energy for fragment #331(A:885:5IG)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-323.212-295.746107.309-47.438-87.334-0.317
Interaction energy analysis for fragmet #331(A:885:5IG)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.682 / q_NPA : 0.835
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A3SER10.8010.88917.34115.17215.1720.0000.0000.0000.000
2A4SER00.0330.03814.514-0.495-0.4950.0000.0000.0000.000
3A5VAL00.0170.01710.7100.6890.6890.0000.0000.0000.000
4A6ILE00.0120.00211.170-0.675-0.6750.0000.0000.0000.000
5A7LEU0-0.045-0.0205.257-0.681-0.6810.0000.0000.0000.000
6A8THR0-0.029-0.0137.7801.6581.6580.0000.0000.0000.000
7A9ASN0-0.0230.0046.697-2.105-2.1050.0000.0000.0000.000
8A10TYR00.0500.0315.5681.4541.4540.0000.0000.0000.000
9A11MET00.0330.0116.725-0.919-0.9190.0000.0000.0000.000
10A12ASP-1-0.776-0.8866.978-19.361-19.3610.0000.0000.0000.000
11A13THR0-0.109-0.0503.850-2.233-1.8040.002-0.082-0.3490.000
12A14GLN00.0410.0532.059-17.500-11.9777.401-4.288-8.6370.000
13A15TYR00.0180.0102.055-2.899-3.6316.111-1.027-4.3520.012
14A16TYR00.009-0.0112.938-4.079-3.0850.210-0.315-0.888-0.007
15A17GLY00.0570.0205.6382.0272.0270.0000.0000.0000.000
16A18GLU-1-0.990-0.9898.968-16.542-16.5420.0000.0000.0000.000
17A19ILE0-0.032-0.00910.2430.0040.0040.0000.0000.0000.000
18A20GLY0-0.015-0.00213.4100.2270.2270.0000.0000.0000.000
19A21ILE0-0.005-0.00112.429-0.202-0.2020.0000.0000.0000.000
20A22GLY00.0490.03216.8950.3310.3310.0000.0000.0000.000
21A23THR0-0.092-0.02920.4210.1060.1060.0000.0000.0000.000
22A24PRO00.046-0.01223.8480.2920.2920.0000.0000.0000.000
23A25PRO0-0.0070.00419.632-0.245-0.2450.0000.0000.0000.000
24A26GLN00.0340.02617.590-0.373-0.3730.0000.0000.0000.000
25A27THR00.000-0.01115.679-0.613-0.6130.0000.0000.0000.000
26A28PHE00.0300.01310.6900.1180.1180.0000.0000.0000.000
27A29LYS10.9701.0069.62017.79517.7950.0000.0000.0000.000
28A30VAL00.000-0.0086.082-0.991-0.9910.0000.0000.0000.000
29A31VAL00.0560.0332.107-1.4140.3673.929-1.298-4.4110.000
30A32PHE0-0.017-0.0044.247-2.272-2.0030.000-0.027-0.2420.000
31A33ASP-1-0.658-0.7301.511-130.294-149.86646.056-16.491-9.993-0.125
32A34THR0-0.024-0.0044.2080.5660.8780.001-0.067-0.2460.000
33A35GLY00.023-0.0082.0308.4488.1573.383-1.818-1.274-0.002
34A36SER0-0.108-0.0942.6886.52011.2060.758-1.792-3.652-0.015
35A37SER00.024-0.0214.3551.8161.8930.000-0.012-0.0650.000
36A38ASN0-0.036-0.0137.1052.8292.8290.0000.0000.0000.000
37A39VAL00.0390.0226.855-3.339-3.3390.0000.0000.0000.000
38A40TRP0-0.049-0.0274.2154.0264.484-0.001-0.024-0.4340.000
39A41VAL00.0430.0317.936-1.934-1.9340.0000.0000.0000.000
40A42PRO00.0370.0149.5260.8690.8690.0000.0000.0000.000
41A43SER00.0270.04612.3631.0531.0530.0000.0000.0000.000
42A44SER00.0310.02115.798-0.004-0.0040.0000.0000.0000.000
43A45LYS10.8770.93018.65613.84613.8460.0000.0000.0000.000
44A53CYS0-0.065-0.0299.747-0.573-0.5730.0000.0000.0000.000
45A47SER00.0200.02016.5810.5660.5660.0000.0000.0000.000
46A48ARG10.9570.96516.36012.81312.8130.0000.0000.0000.000
47A49LEU0-0.010-0.00816.9170.0920.0920.0000.0000.0000.000
48A50TYR0-0.0110.00512.427-0.288-0.2880.0000.0000.0000.000
49A51THR00.023-0.01212.017-0.147-0.1470.0000.0000.0000.000
50A52ALA00.0620.0258.0360.2620.2620.0000.0000.0000.000
51A54VAL0-0.089-0.03912.5280.5330.5330.0000.0000.0000.000
52A55TYR0-0.038-0.03110.2190.8100.8100.0000.0000.0000.000
53A56HIS00.0020.0275.933-0.201-0.2010.0000.0000.0000.000
54A57LYS10.8150.91511.38116.45716.4570.0000.0000.0000.000
55A58LEU0-0.056-0.04313.257-0.907-0.9070.0000.0000.0000.000
56A59PHE0-0.044-0.02215.1320.6540.6540.0000.0000.0000.000
57A60ASP-1-0.849-0.94416.747-12.267-12.2670.0000.0000.0000.000
58A61ALA00.0070.00120.4520.2940.2940.0000.0000.0000.000
59A62SER0-0.063-0.03021.8990.4670.4670.0000.0000.0000.000
60A63ASP-1-0.916-0.94023.324-10.817-10.8170.0000.0000.0000.000
61A64SER0-0.119-0.08321.7960.1450.1450.0000.0000.0000.000
62A65SER0-0.020-0.02223.9830.0270.0270.0000.0000.0000.000
63A66SER0-0.073-0.04822.5570.3410.3410.0000.0000.0000.000
64A67TYR00.0180.02220.482-0.091-0.0910.0000.0000.0000.000
65A68LYS10.8840.94821.98611.87711.8770.0000.0000.0000.000
66A69HIS00.0470.02921.659-0.610-0.6100.0000.0000.0000.000
67A70ASN00.8390.89320.03313.82813.8280.0000.0000.0000.000
68A71GLY00.0230.00420.4040.4250.4250.0000.0000.0000.000
69A72THR0-0.0230.01518.2190.2710.2710.0000.0000.0000.000
70A73GLU-1-0.902-0.95117.428-15.146-15.1460.0000.0000.0000.000
71A74LEU0-0.064-0.03011.181-0.115-0.1150.0000.0000.0000.000
72A75THR0-0.012-0.01010.7740.4250.4250.0000.0000.0000.000
73A76LEU0-0.027-0.0086.6960.2380.2380.0000.0000.0000.000
74A77ARG10.9700.9697.05122.59522.5950.0000.0000.0000.000
75A78TYR00.0420.0342.665-7.182-1.0733.304-1.899-7.514-0.001
76A79SER00.003-0.0182.178-4.456-3.3982.513-1.282-2.290-0.013
77A80THR00.011-0.0012.492-5.140-0.7021.298-1.847-3.890-0.006
78A81GLY00.0330.0183.8903.2243.6370.002-0.046-0.3690.000
79A82THR0-0.067-0.0334.525-2.872-2.668-0.001-0.017-0.1860.000
80A83VAL00.0330.0315.8951.2151.2150.0000.0000.0000.000
81A84SER00.0470.0168.386-0.857-0.8570.0000.0000.0000.000
82A85GLY00.0770.04712.001-0.024-0.0240.0000.0000.0000.000
83A86PHE0-0.0230.01214.5210.5390.5390.0000.0000.0000.000
84A87LEU0-0.029-0.01814.020-0.584-0.5840.0000.0000.0000.000
85A88SER0-0.037-0.03616.2621.3371.3370.0000.0000.0000.000
86A89GLN0-0.015-0.00317.002-0.371-0.3710.0000.0000.0000.000
87A90ASP-1-0.668-0.79618.418-12.845-12.8450.0000.0000.0000.000
88A91ILE0-0.045-0.02018.782-0.580-0.5800.0000.0000.0000.000
89A92ILE00.0320.00213.122-0.225-0.2250.0000.0000.0000.000
90A93THR0-0.060-0.02716.7510.5130.5130.0000.0000.0000.000
91A94VAL00.036-0.00213.056-0.808-0.8080.0000.0000.0000.000
92A95GLY00.0600.02915.5450.3670.3670.0000.0000.0000.000
93A96GLY0-0.022-0.01516.6950.2580.2580.0000.0000.0000.000
94A97ILE0-0.0050.00618.2900.6620.6620.0000.0000.0000.000
95A98THR0-0.015-0.00218.821-0.492-0.4920.0000.0000.0000.000
96A99VAL00.0230.01216.7680.2970.2970.0000.0000.0000.000
97A100THR0-0.0230.00118.743-0.134-0.1340.0000.0000.0000.000
98A101GLN00.0340.01013.5310.6390.6390.0000.0000.0000.000
99A102MET0-0.042-0.01116.0980.8730.8730.0000.0000.0000.000
100A103PHE0-0.021-0.02011.946-1.288-1.2880.0000.0000.0000.000
101A104GLY00.016-0.00511.3141.2971.2970.0000.0000.0000.000
102A105GLU-1-0.776-0.89011.792-16.313-16.3130.0000.0000.0000.000
103A106VAL0-0.011-0.0129.1810.5920.5920.0000.0000.0000.000
104A107THR0-0.022-0.03412.6030.7570.7570.0000.0000.0000.000
105A108GLU-1-0.982-0.99112.283-16.045-16.0450.0000.0000.0000.000
106A109MET00.0290.0137.056-1.289-1.2890.0000.0000.0000.000
107A110PRO0-0.012-0.0026.8261.2931.2930.0000.0000.0000.000
108A111ALA00.0470.0097.505-1.113-1.1130.0000.0000.0000.000
109A112LEU0-0.0330.0306.175-0.600-0.6000.0000.0000.0000.000
110A113PRO00.040-0.0192.026-0.5870.4082.474-1.104-2.3660.002
111A114PHE00.030-0.0143.072-4.784-1.7020.457-1.140-2.398-0.010
112A115MET00.0120.0344.2630.3540.512-0.001-0.004-0.1530.000
113A116LEU0-0.086-0.0433.2210.6661.3870.055-0.128-0.6480.000
114A117ALA0-0.041-0.0142.278-2.898-2.2183.975-1.738-2.917-0.009
115A118GLU-1-0.899-0.9632.998-14.795-16.7390.2382.107-0.401-0.002
116A119PHE0-0.095-0.0392.381-5.377-0.8152.818-1.461-5.918-0.004
117A120ASP-1-0.793-0.8966.099-19.845-19.8450.0000.0000.0000.000
118A121GLY00.027-0.0156.279-0.146-0.1460.0000.0000.0000.000
119A122VAL0-0.080-0.0222.219-4.172-4.1843.721-0.664-3.045-0.006
120A123VAL00.0170.0154.4224.5214.753-0.001-0.022-0.2100.000
121A124GLY0-0.015-0.0105.721-3.154-3.1540.0000.0000.0000.000
122A125MET0-0.056-0.0386.5125.6375.6370.0000.0000.0000.000
123A126GLY00.0220.0107.0982.4402.4400.0000.0000.0000.000
124A127PHE0-0.045-0.0038.0472.7152.7150.0000.0000.0000.000
125A128ILE00.0540.04010.927-1.540-1.5400.0000.0000.0000.000
126A129GLU-1-0.917-0.96613.436-19.070-19.0700.0000.0000.0000.000
127A130GLN0-0.047-0.0198.745-0.125-0.1250.0000.0000.0000.000
128A131ALA0-0.0210.0029.813-2.169-2.1690.0000.0000.0000.000
129A132ILE00.0120.0149.9572.4412.4410.0000.0000.0000.000
130A133GLY0-0.001-0.01412.5860.3210.3210.0000.0000.0000.000
131A134ARG10.8770.93415.33816.27516.2750.0000.0000.0000.000
132A135VAL0-0.0030.00913.6041.0961.0960.0000.0000.0000.000
133A136THR00.0090.00414.470-1.002-1.0020.0000.0000.0000.000
134A137PRO00.0580.03911.677-0.132-0.1320.0000.0000.0000.000
135A138ILE00.0490.02111.5801.2431.2430.0000.0000.0000.000
136A139PHE00.0240.00112.8661.1971.1970.0000.0000.0000.000
137A140ASP-1-0.800-0.88514.658-18.296-18.2960.0000.0000.0000.000
138A141ASN0-0.003-0.02716.8831.7621.7620.0000.0000.0000.000
139A142ILE0-0.032-0.01115.5440.9260.9260.0000.0000.0000.000
140A143ILE0-0.0040.00817.1340.8460.8460.0000.0000.0000.000
141A144SER0-0.066-0.02520.5870.9480.9480.0000.0000.0000.000
142A145GLN0-0.076-0.03522.0240.4370.4370.0000.0000.0000.000
143A146GLY0-0.0190.00424.3100.4630.4630.0000.0000.0000.000
144A147VAL0-0.040-0.02622.7910.4000.4000.0000.0000.0000.000
145A148LEU0-0.049-0.02418.5900.1670.1670.0000.0000.0000.000
146A149LYS10.9580.98122.66911.39011.3900.0000.0000.0000.000
147A150GLU-1-0.924-0.96421.636-12.609-12.6090.0000.0000.0000.000
148A151ASP-1-0.911-0.95519.480-15.112-15.1120.0000.0000.0000.000
149A152VAL00.0380.02616.804-0.613-0.6130.0000.0000.0000.000
150A153PHE0-0.008-0.00310.1900.3960.3960.0000.0000.0000.000
151A154SER00.0030.01112.792-0.489-0.4890.0000.0000.0000.000
152A155PHE0-0.010-0.0265.162-0.468-0.4680.0000.0000.0000.000
153A156TYR00.0340.0299.2770.4720.4720.0000.0000.0000.000
154A157TYR0-0.031-0.0332.752-0.7330.7520.414-0.679-1.219-0.003
155A158ASN00.0670.0567.7840.5310.5310.0000.0000.0000.000
156A159ARG10.9070.9358.89614.00114.0010.0000.0000.0000.000
157A160ASP-1-0.878-0.94910.696-15.842-15.8420.0000.0000.0000.000
158A161SER0-0.075-0.06611.5490.7500.7500.0000.0000.0000.000
159A162GLU-1-0.964-0.96714.853-11.929-11.9290.0000.0000.0000.000
160A163ASN0-0.0390.00017.600-0.093-0.0930.0000.0000.0000.000
161A164SER00.0460.00616.177-0.208-0.2080.0000.0000.0000.000
162A165GLN0-0.034-0.02016.8360.6610.6610.0000.0000.0000.000
163A166SER0-0.0270.00814.8790.2620.2620.0000.0000.0000.000
164A167LEU0-0.013-0.00212.631-0.339-0.3390.0000.0000.0000.000
165A168GLY00.0630.0129.498-0.001-0.0010.0000.0000.0000.000
166A169GLY00.0580.0067.979-1.178-1.1780.0000.0000.0000.000
167A170GLN0-0.063-0.0389.0471.1881.1880.0000.0000.0000.000
168A171ILE0-0.0050.0298.514-0.434-0.4340.0000.0000.0000.000
169A172VAL0-0.017-0.01810.4181.1741.1740.0000.0000.0000.000
170A173LEU0-0.028-0.01812.779-0.634-0.6340.0000.0000.0000.000
171A174GLY0-0.010-0.03115.8280.9450.9450.0000.0000.0000.000
172A175GLY00.0380.01217.3670.8420.8420.0000.0000.0000.000
173A176SER0-0.002-0.00616.424-0.968-0.9680.0000.0000.0000.000
174A177ASP-1-0.835-0.91416.204-12.887-12.8870.0000.0000.0000.000
175A178PRO0-0.012-0.02717.767-0.218-0.2180.0000.0000.0000.000
176A179GLN0-0.067-0.03018.7000.5340.5340.0000.0000.0000.000
177A180HIS0-0.028-0.01414.8010.0740.0740.0000.0000.0000.000
178A181TYR00.0130.01515.983-0.741-0.7410.0000.0000.0000.000
179A182GLU-1-0.943-0.96218.406-11.016-11.0160.0000.0000.0000.000
180A183GLY0-0.040-0.02021.186-0.317-0.3170.0000.0000.0000.000
181A184ASN0-0.022-0.01923.348-0.049-0.0490.0000.0000.0000.000
182A185PHE00.0510.01916.491-0.136-0.1360.0000.0000.0000.000
183A186HIS0-0.088-0.03420.3351.1581.1580.0000.0000.0000.000
184A187TYR0-0.068-0.05919.507-0.297-0.2970.0000.0000.0000.000
185A188ILE0-0.025-0.00417.0460.7490.7490.0000.0000.0000.000
186A189ASN0-0.004-0.00918.057-0.944-0.9440.0000.0000.0000.000
187A190LEU0-0.045-0.00713.296-0.274-0.2740.0000.0000.0000.000
188A191ILE0-0.0230.00814.8320.9090.9090.0000.0000.0000.000
189A192LYS10.8420.92615.56717.68217.6820.0000.0000.0000.000
190A193THR00.0360.02214.807-1.164-1.1640.0000.0000.0000.000
191A194GLY00.063-0.00113.3250.6610.6610.0000.0000.0000.000
192A195VAL00.017-0.0128.632-1.961-1.9610.0000.0000.0000.000
193A196TRP0-0.0100.0207.6743.1953.1950.0000.0000.0000.000
194A197GLN0-0.040-0.0459.402-1.236-1.2360.0000.0000.0000.000
195A198ILE00.005-0.00711.2391.7491.7490.0000.0000.0000.000
196A199GLN00.0390.01814.515-0.891-0.8910.0000.0000.0000.000
197A200MET0-0.077-0.02514.8350.1160.1160.0000.0000.0000.000
198A201LYS10.7480.83717.69914.30114.3010.0000.0000.0000.000
199A202GLY00.0840.04520.0130.6690.6690.0000.0000.0000.000
200A203VAL0-0.0200.00017.511-0.443-0.4430.0000.0000.0000.000
201A204SER0-0.023-0.01120.5800.4830.4830.0000.0000.0000.000
202A205VAL00.0480.03321.674-0.521-0.5210.0000.0000.0000.000
203A206GLY00.0280.02023.9730.4910.4910.0000.0000.0000.000
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