FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XVL1X

Calculation Name: 3MVL-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 4-{[5-(cyclopropylcarbamoyl)-2-methylphenyl]amino}-5-methyl-n-propylpyrrolo[2,1-f][1,2,4]triazine-6-carboxamide

ligand 3-letter code: 38P

PDB ID: 3MVL

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName 38P
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5758216.902117
FMO2-HF: Nuclear repulsion 5617938.813499
FMO2-HF: Total energy -140278.088618
FMO2-MP2: Total energy -140687.837198


3D Structure
Snapshot
 
Ligand structure

38P

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-81.470-87.448135.080-36.327-92.7820.011


Interactive mode: IFIE and PIEDA for fragment #347(A:361:38P)


Summations of interaction energy for fragment #347(A:361:38P)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-81.47-87.448135.08-36.327-92.782-0.011
Interaction energy analysis for fragmet #347(A:361:38P)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.012 / q_NPA : 0.002
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8660.91716.0980.3620.3620.0000.0000.0000.000
2A7THR00.1030.06619.082-0.003-0.0030.0000.0000.0000.000
3A8PHE00.0260.01513.776-0.018-0.0180.0000.0000.0000.000
4A9TYR0-0.049-0.03114.6890.0550.0550.0000.0000.0000.000
5A10ARG11.0071.01216.2670.0200.0200.0000.0000.0000.000
6A11GLN00.0040.00614.8210.0470.0470.0000.0000.0000.000
7A12GLU-1-0.942-0.97716.2300.1100.1100.0000.0000.0000.000
8A13LEU00.0040.00611.6260.0060.0060.0000.0000.0000.000
9A14ASN0-0.021-0.01513.9080.0420.0420.0000.0000.0000.000
10A15LYS10.9620.96915.388-0.237-0.2370.0000.0000.0000.000
11A16THR00.0050.01212.668-0.043-0.0430.0000.0000.0000.000
12A17ILE00.0310.02115.6320.0050.0050.0000.0000.0000.000
13A18TRP00.005-0.0126.809-0.081-0.0810.0000.0000.0000.000
14A19GLU-1-0.935-0.96613.150-0.195-0.1950.0000.0000.0000.000
15A20VAL00.004-0.0049.725-0.084-0.0840.0000.0000.0000.000
16A21PRO0-0.044-0.02411.7680.0490.0490.0000.0000.0000.000
17A22GLU-1-0.930-0.98814.628-0.180-0.1800.0000.0000.0000.000
18A23ARG10.8510.91412.8230.5470.5470.0000.0000.0000.000
19A24TYR0-0.080-0.0679.7640.0170.0170.0000.0000.0000.000
20A25GLN00.0520.03512.6610.0550.0550.0000.0000.0000.000
21A26ASN0-0.039-0.01512.1250.0270.0270.0000.0000.0000.000
22A27LEU00.0450.0229.6410.0090.0090.0000.0000.0000.000
23A28SER0-0.003-0.0238.548-0.042-0.0420.0000.0000.0000.000
24A29PRO00.0110.0078.2440.2080.2080.0000.0000.0000.000
25A30VAL00.0170.0123.860-0.694-0.1160.003-0.059-0.5240.000
26A31GLY00.0160.0145.440-0.835-0.8350.0000.0000.0000.000
27A32SER0-0.080-0.0416.0120.4460.4460.0000.0000.0000.000
28A33GLY00.0490.0312.2410.0690.2871.564-1.150-0.6320.008
29A34ALA00.0010.0132.926-0.153-1.030-0.0111.286-0.398-0.002
30A35TYR0-0.049-0.0345.4500.2280.2280.0000.0000.0000.000
31A36GLY00.0320.0167.097-0.070-0.0700.0000.0000.0000.000
32A37SER0-0.035-0.0086.5710.6300.6300.0000.0000.0000.000
33A38VAL00.0490.0252.272-3.918-2.0464.082-1.443-4.5120.011
34A39CYS0-0.070-0.0294.983-0.707-0.7070.0000.0000.0000.000
35A40ALA00.0080.0275.134-0.222-0.2220.0000.0000.0000.000
36A41ALA0-0.003-0.0146.831-0.147-0.1470.0000.0000.0000.000
37A42PHE0-0.062-0.0278.8330.0410.0410.0000.0000.0000.000
38A43ASP-1-0.785-0.86210.885-0.534-0.5340.0000.0000.0000.000
39A44THR0-0.012-0.02712.5420.0480.0480.0000.0000.0000.000
40A45LYS10.9190.95715.7510.4370.4370.0000.0000.0000.000
41A46THR00.0130.00712.278-0.008-0.0080.0000.0000.0000.000
42A47GLY0-0.0070.01814.7160.0450.0450.0000.0000.0000.000
43A48LEU00.0470.0229.5340.0550.0550.0000.0000.0000.000
44A49ARG10.8850.9246.413-0.464-0.4640.0000.0000.0000.000
45A50VAL00.0140.0255.4250.4660.4660.0000.0000.0000.000
46A51ALA00.0090.0062.481-0.5680.9542.004-0.960-2.5660.002
47A52VAL0-0.002-0.0092.916-3.925-2.1940.402-0.780-1.353-0.008
48A53LYS10.8310.9252.181-0.462-1.66713.541-3.359-8.9780.021
49A54LYS10.8900.9613.450-1.365-1.4590.0260.367-0.2980.001
50A55LEU00.0270.0105.1330.5790.5790.0000.0000.0000.000
51A56SER00.001-0.0178.1360.0910.0910.0000.0000.0000.000
52A57ARG10.9170.95711.614-0.234-0.2340.0000.0000.0000.000
53A58PRO00.0330.01310.2430.0320.0320.0000.0000.0000.000
54A59PHE00.1140.05512.240-0.082-0.0820.0000.0000.0000.000
55A60GLN0-0.035-0.01815.6220.0470.0470.0000.0000.0000.000
56A61SER00.0080.00515.7400.0360.0360.0000.0000.0000.000
57A62ILE00.1100.05515.924-0.070-0.0700.0000.0000.0000.000
58A63ILE00.0010.00812.744-0.081-0.0810.0000.0000.0000.000
59A64HIS0-0.067-0.05711.637-0.045-0.0450.0000.0000.0000.000
60A65ALA00.0400.04811.032-0.226-0.2260.0000.0000.0000.000
61A66LYS10.8990.94911.6650.4360.4360.0000.0000.0000.000
62A67ARG10.8350.9207.6460.2500.2500.0000.0000.0000.000
63A68THR0-0.029-0.0246.478-0.651-0.6510.0000.0000.0000.000
64A69TYR00.0170.0037.196-0.504-0.5040.0000.0000.0000.000
65A70ARG10.8880.9506.0631.1881.1880.0000.0000.0000.000
66A71GLU-1-0.771-0.8701.789-24.004-30.43420.944-6.508-8.006-0.055
67A72LEU0-0.027-0.0073.5310.2500.315-0.0040.175-0.2370.000
68A73ARG10.9190.9696.5561.4941.4940.0000.0000.0000.000
69A74LEU0-0.0280.0032.650-0.8210.0800.445-0.265-1.081-0.001
70A75LEU00.023-0.0092.631-2.535-0.1242.084-0.813-3.6820.003
71A76LYS10.8000.9255.6101.5531.5530.0000.0000.0000.000
72A77HIS0-0.064-0.0387.8140.1820.1820.0000.0000.0000.000
73A78MET0-0.050-0.0265.1170.2590.2590.0000.0000.0000.000
74A79LYS10.8860.9598.3200.7860.7860.0000.0000.0000.000
75A80HIS00.0820.03710.4210.1100.1100.0000.0000.0000.000
76A81GLU-1-0.779-0.86910.4950.5560.5560.0000.0000.0000.000
77A82ASN00.0080.0239.7740.0510.0510.0000.0000.0000.000
78A83VAL0-0.041-0.0256.2400.5050.5050.0000.0000.0000.000
79A84ILE0-0.090-0.0262.648-4.334-1.3451.976-1.120-3.8460.007
80A85GLY00.0800.0375.320-0.868-0.8680.0000.0000.0000.000
81A86LEU0-0.037-0.0264.925-0.491-0.4910.0000.0000.0000.000
82A87LEU0-0.047-0.0206.5180.2760.2760.0000.0000.0000.000
83A88ASP-1-0.845-0.9007.156-0.685-0.6850.0000.0000.0000.000
84A89VAL0-0.011-0.0036.691-0.535-0.5350.0000.0000.0000.000
85A90PHE0-0.0110.0017.7120.2940.2940.0000.0000.0000.000
86A91THR00.027-0.02010.015-0.023-0.0230.0000.0000.0000.000
87A92PRO0-0.0090.00312.8950.0140.0140.0000.0000.0000.000
88A93ALA0-0.050-0.00815.8160.0450.0450.0000.0000.0000.000
89A94ARG10.9260.96917.9960.2460.2460.0000.0000.0000.000
90A95SER0-0.022-0.00921.1150.0020.0020.0000.0000.0000.000
91A96LEU00.0800.04219.548-0.043-0.0430.0000.0000.0000.000
92A97GLU-1-0.929-0.97620.373-0.335-0.3350.0000.0000.0000.000
93A98GLU-1-0.915-0.96920.328-0.245-0.2450.0000.0000.0000.000
94A99PHE0-0.050-0.01712.551-0.001-0.0010.0000.0000.0000.000
95A100ASN0-0.039-0.04315.873-0.025-0.0250.0000.0000.0000.000
96A101ASP-1-0.904-0.93712.555-0.240-0.2400.0000.0000.0000.000
97A102VAL0-0.021-0.0237.056-0.069-0.0690.0000.0000.0000.000
98A103TYR00.0040.0066.1000.3090.3090.0000.0000.0000.000
99A104LEU00.0100.0132.308-1.365-0.0140.883-0.452-1.783-0.001
100A105VAL00.009-0.0052.649-2.805-0.9890.801-1.066-1.551-0.015
101A106THR00.0370.0122.221-2.658-0.4822.377-0.922-3.631-0.004
102A107HIS00.0820.0374.064-1.300-0.6720.003-0.127-0.5030.000
103A108LEU0-0.094-0.0402.111-7.226-4.1257.378-3.185-7.294-0.003
104A109MET0-0.0060.0041.774-4.665-11.62916.641-4.153-5.5240.035
105A110GLY00.0670.0322.589-6.812-4.6911.216-0.881-2.456-0.022
106A111ALA0-0.075-0.0601.789-3.260-4.1098.861-4.548-3.465-0.008
107A112ASP-1-0.824-0.9022.7763.5250.3900.1064.313-1.284-0.006
108A113LEU00.048-0.0154.092-0.213-0.0580.002-0.023-0.1340.000
109A114ASN0-0.060-0.0157.2150.0660.0660.0000.0000.0000.000
110A115ASN0-0.075-0.0505.219-0.011-0.0110.0000.0000.0000.000
111A116ILE0-0.0130.0146.6030.0030.0030.0000.0000.0000.000
112A117VAL00.0260.0208.8340.0360.0360.0000.0000.0000.000
113A118LYS10.9340.97310.9060.0180.0180.0000.0000.0000.000
114A119CYS0-0.081-0.04710.3630.0250.0250.0000.0000.0000.000
115A120GLN0-0.029-0.01812.574-0.025-0.0250.0000.0000.0000.000
116A121LYS10.8780.95415.012-0.197-0.1970.0000.0000.0000.000
117A122LEU00.0160.01213.017-0.021-0.0210.0000.0000.0000.000
118A123THR0-0.079-0.05117.4130.0170.0170.0000.0000.0000.000
119A124ASP-1-0.815-0.93619.7820.2940.2940.0000.0000.0000.000
120A125ASP-1-0.848-0.89320.9740.2760.2760.0000.0000.0000.000
121A126HIS00.0530.02415.5270.0270.0270.0000.0000.0000.000
122A127VAL00.009-0.00416.3250.0690.0690.0000.0000.0000.000
123A128GLN00.0150.03817.7520.0620.0620.0000.0000.0000.000
124A129PHE00.0770.03714.3010.0430.0430.0000.0000.0000.000
125A130LEU00.000-0.00411.1820.0950.0950.0000.0000.0000.000
126A131ILE0-0.015-0.01514.4940.1440.1440.0000.0000.0000.000
127A132TYR0-0.018-0.01716.9110.0780.0780.0000.0000.0000.000
128A133GLN00.0790.02512.5110.1000.1000.0000.0000.0000.000
129A134ILE0-0.050-0.01812.6520.1310.1310.0000.0000.0000.000
130A135LEU0-0.009-0.02112.8410.0540.0540.0000.0000.0000.000
131A136ARG10.7970.86115.183-0.508-0.5080.0000.0000.0000.000
132A137GLY00.0130.01211.125-0.071-0.0710.0000.0000.0000.000
133A138LEU0-0.066-0.04910.111-0.163-0.1630.0000.0000.0000.000
134A139LYS10.9040.95712.005-0.334-0.3340.0000.0000.0000.000
135A140TYR00.0330.0329.575-0.082-0.0820.0000.0000.0000.000
136A141ILE0-0.037-0.0327.280-0.150-0.1500.0000.0000.0000.000
137A142HIS0-0.048-0.0229.726-0.195-0.1950.0000.0000.0000.000
138A143SER0-0.0080.02712.601-0.068-0.0680.0000.0000.0000.000
139A144ALA00.0110.01810.386-0.029-0.0290.0000.0000.0000.000
140A145ASP-1-0.945-0.98511.624-0.278-0.2780.0000.0000.0000.000
141A146ILE0-0.082-0.0346.212-0.139-0.1390.0000.0000.0000.000
142A147ILE0-0.010-0.0099.1820.1550.1550.0000.0000.0000.000
143A148HIS0-0.068-0.0525.437-1.415-1.4150.0000.0000.0000.000
144A149ARG10.8360.9217.348-0.027-0.0270.0000.0000.0000.000
145A150ASP-1-0.890-0.9468.1411.7911.7910.0000.0000.0000.000
146A151LEU00.0460.0569.1280.5030.5030.0000.0000.0000.000
147A152LYS10.8150.8819.582-2.630-2.6300.0000.0000.0000.000
148A153PRO00.0590.01010.1000.4650.4650.0000.0000.0000.000
149A154SER00.0150.0047.118-0.159-0.1590.0000.0000.0000.000
150A155ASN0-0.041-0.0115.623-0.388-0.3880.0000.0000.0000.000
151A156LEU00.0160.0196.7031.1481.1480.0000.0000.0000.000
152A157ALA00.0130.0112.961-2.793-1.4210.251-0.574-1.0480.006
153A158VAL0-0.002-0.0154.3970.0170.211-0.001-0.012-0.1810.000
154A159ASN00.0670.0354.662-0.261-0.060-0.001-0.008-0.1930.000
155A160GLU-1-0.925-0.9627.072-0.055-0.0550.0000.0000.0000.000
156A161ASP-1-0.919-0.9709.4550.5670.5670.0000.0000.0000.000
157A162CYS0-0.070-0.04310.400-0.002-0.0020.0000.0000.0000.000
158A163GLU-1-0.904-0.92210.3340.7790.7790.0000.0000.0000.000
159A164LEU0-0.051-0.0388.6460.3650.3650.0000.0000.0000.000
160A165LYS10.8640.9094.805-1.534-1.5340.0000.0000.0000.000
161A166ILE0-0.0280.0116.0730.5190.5190.0000.0000.0000.000
162A167LEU00.0240.0052.046-5.803-2.2807.911-2.874-8.5600.012
163A168ASP-1-0.878-0.9691.7592.827-5.22321.509-5.536-7.9240.023
164A169PHE0-0.0180.0162.170-6.594-9.2387.5270.249-5.132-0.005
165A170GLY00.0520.0012.1781.248-2.9027.627-0.769-2.708-0.014
166A171LEU0-0.047-0.0192.136-0.664-1.2004.934-1.128-3.2700.004
167A172ALA0-0.0070.0015.275-0.0230.008-0.001-0.002-0.0280.000
168A173ARG10.8850.9338.2310.3020.3020.0000.0000.0000.000
169A174HIS00.0110.02111.8060.0870.0870.0000.0000.0000.000
170A175THR0-0.091-0.05413.9930.0390.0390.0000.0000.0000.000
171A176ASP-1-0.799-0.91813.8990.2250.2250.0000.0000.0000.000
172A177ASP-1-0.826-0.90714.172-0.073-0.0730.0000.0000.0000.000
173A178GLU-1-0.900-0.93817.364-0.038-0.0380.0000.0000.0000.000
174A179MET0-0.042-0.01019.7270.0330.0330.0000.0000.0000.000
175A180THR0-0.030-0.01519.0540.0060.0060.0000.0000.0000.000
176A181GLY00.0280.01022.0120.0200.0200.0000.0000.0000.000
177A182TYR0-0.069-0.03514.7920.0320.0320.0000.0000.0000.000
178A183VAL00.0660.04217.6080.0110.0110.0000.0000.0000.000
179A184ALA00.0290.01315.1560.0220.0220.0000.0000.0000.000
180A185THR0-0.073-0.03813.2040.1060.1060.0000.0000.0000.000
181A186ARG10.8920.94315.926-0.716-0.7160.0000.0000.0000.000
182A187TRP0-0.039-0.00515.1430.1560.1560.0000.0000.0000.000
183A188TYR00.0300.01414.796-0.021-0.0210.0000.0000.0000.000
184A189ARG10.8910.97112.256-0.637-0.6370.0000.0000.0000.000
185A190ALA00.0290.01916.174-0.052-0.0520.0000.0000.0000.000
186A191PRO00.0180.00718.178-0.016-0.0160.0000.0000.0000.000
187A192GLU-1-0.798-0.89919.5940.2820.2820.0000.0000.0000.000
188A193ILE0-0.023-0.00114.180-0.013-0.0130.0000.0000.0000.000
189A194MET0-0.076-0.03218.4340.0260.0260.0000.0000.0000.000
190A195LEU0-0.049-0.02320.105-0.019-0.0190.0000.0000.0000.000
191A196ASN00.0190.01621.248-0.015-0.0150.0000.0000.0000.000
192A197TRP0-0.015-0.01223.060-0.017-0.0170.0000.0000.0000.000
193A198MET0-0.020-0.03223.466-0.017-0.0170.0000.0000.0000.000
194A199HIS00.000-0.00322.2090.0110.0110.0000.0000.0000.000
195A200TYR0-0.065-0.04414.168-0.013-0.0130.0000.0000.0000.000
196A201ASN00.0600.02417.434-0.008-0.0080.0000.0000.0000.000
197A202GLN00.026-0.01813.3360.0880.0880.0000.0000.0000.000
198A203THR00.0010.02014.5140.0900.0900.0000.0000.0000.000
199A204VAL0-0.015-0.01313.2330.0400.0400.0000.0000.0000.000
200A205ASP-1-0.698-0.85710.8080.9220.9220.0000.0000.0000.000
201A206ILE0-0.019-0.00913.6570.0760.0760.0000.0000.0000.000
202A207TRP0-0.0040.01616.986-0.043-0.0430.0000.0000.0000.000
203A208SER0-0.005-0.01413.863-0.011-0.0110.0000.0000.0000.000
204A209VAL00.0230.01014.6370.0310.0310.0000.0000.0000.000
205A210GLY00.0640.04416.760-0.035-0.0350.0000.0000.0000.000
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