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FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-04-05

All entries: 36946

Number of unique PDB entries: 7781

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FMODB ID: XY22P

Calculation Name: 4ANN-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 4ANN

Chain ID: A

ChEMBL ID:

UniProt ID: Q2G185

Base Structure: X-ray

Registration Date: 2017-11-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20171117
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 178
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -1932262.623278
FMO2-HF: Nuclear repulsion 1860959.039034
FMO2-HF: Total energy -71303.584244
FMO2-MP2: Total energy -71515.22232


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:29:ACE)


Summations of interaction energy for fragment #1(A:29:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-1.1860.175-0.013-0.623-0.725-0.002
Interaction energy analysis for fragmet #1(A:29:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.026 / q_NPA : -0.023
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A31ASP-1-0.787-0.8893.852-0.5910.698-0.011-0.601-0.677-0.002
4A32MET0-0.078-0.0034.2060.3100.432-0.001-0.018-0.1030.000
5A33ARG10.8620.9174.793-0.164-0.214-0.001-0.0040.0550.000
6A34GLU-1-0.890-0.9577.1910.4990.4990.0000.0000.0000.000
7A35ILE0-0.041-0.0139.468-0.057-0.0570.0000.0000.0000.000
8A36PRO00.0500.01712.7430.0200.0200.0000.0000.0000.000
9A37LYS10.8460.92215.393-0.110-0.1100.0000.0000.0000.000
10A38SER0-0.059-0.01318.728-0.012-0.0120.0000.0000.0000.000
11A39SER0-0.060-0.03717.038-0.014-0.0140.0000.0000.0000.000
12A40ILE0-0.0030.01017.694-0.016-0.0160.0000.0000.0000.000
13A41LYS10.9640.99120.9790.0270.0270.0000.0000.0000.000
14A42PRO00.0730.02024.536-0.003-0.0030.0000.0000.0000.000
15A43GLU-1-0.896-0.95626.053-0.004-0.0040.0000.0000.0000.000
16A44HIS0-0.013-0.02723.608-0.005-0.0050.0000.0000.0000.000
17A45PHE00.0330.01122.098-0.003-0.0030.0000.0000.0000.000
18A46HIS0-0.056-0.00522.553-0.005-0.0050.0000.0000.0000.000
19A47LEU0-0.011-0.02723.375-0.005-0.0050.0000.0000.0000.000
20A48MET00.0010.01318.390-0.013-0.0130.0000.0000.0000.000
21A49TYR00.0640.03718.938-0.010-0.0100.0000.0000.0000.000
22A50LEU0-0.024-0.00820.765-0.009-0.0090.0000.0000.0000.000
23A51LEU0-0.042-0.02815.018-0.016-0.0160.0000.0000.0000.000
24A52GLU-1-0.861-0.91616.396-0.049-0.0490.0000.0000.0000.000
25A53GLN0-0.073-0.01518.0830.0130.0130.0000.0000.0000.000
26A54HIS0-0.034-0.02820.673-0.010-0.0100.0000.0000.0000.000
27A55SER00.012-0.00420.7670.0120.0120.0000.0000.0000.000
28A56PRO0-0.008-0.00521.721-0.011-0.0110.0000.0000.0000.000
29A57TYR00.003-0.01121.7810.0030.0030.0000.0000.0000.000
30A58PHE0-0.052-0.02516.191-0.009-0.0090.0000.0000.0000.000
31A59ILE0-0.0070.01313.0060.0260.0260.0000.0000.0000.000
32A60ASP-1-0.863-0.91515.970-0.133-0.1330.0000.0000.0000.000
33A61ALA00.022-0.00113.631-0.040-0.0400.0000.0000.0000.000
34A62GLU-1-0.908-0.94413.735-0.078-0.0780.0000.0000.0000.000
35A63LEU0-0.039-0.01713.6530.0060.0060.0000.0000.0000.000
36A64THR0-0.049-0.02813.5400.0330.0330.0000.0000.0000.000
37A65GLU-1-0.873-0.93715.4330.0570.0570.0000.0000.0000.000
38A66LEU0-0.036-0.00713.2480.0060.0060.0000.0000.0000.000
39A67ARG10.9120.93317.266-0.201-0.2010.0000.0000.0000.000
40A68ASP-1-0.855-0.93317.9170.1120.1120.0000.0000.0000.000
41A69SER0-0.022-0.01313.027-0.014-0.0140.0000.0000.0000.000
42A70PHE00.0420.02414.584-0.002-0.0020.0000.0000.0000.000
43A71GLN0-0.046-0.0349.9640.0120.0120.0000.0000.0000.000
44A72ILE0-0.008-0.00110.008-0.016-0.0160.0000.0000.0000.000
45A73HIS0-0.012-0.0098.8800.0170.0170.0000.0000.0000.000
46A74TYR00.0070.0037.5620.0290.0290.0000.0000.0000.000
47A75ASP-1-0.788-0.87211.071-0.140-0.1400.0000.0000.0000.000
48A76ILE0-0.062-0.0329.568-0.028-0.0280.0000.0000.0000.000
49A77ASN00.004-0.00813.0460.0050.0050.0000.0000.0000.000
50A78ASP-1-0.868-0.95616.154-0.155-0.1550.0000.0000.0000.000
51A79ASN0-0.208-0.11718.8140.0320.0320.0000.0000.0000.000
52A80HIS0-0.0010.01016.6760.0120.0120.0000.0000.0000.000
53A81THR0-0.044-0.01717.046-0.011-0.0110.0000.0000.0000.000
54A82PRO00.0520.02114.122-0.001-0.0010.0000.0000.0000.000
55A83PHE00.0340.00516.0520.0560.0560.0000.0000.0000.000
56A84ASP-1-0.852-0.94215.001-0.372-0.3720.0000.0000.0000.000
57A85ASN0-0.045-0.02117.4570.0100.0100.0000.0000.0000.000
58A86ILE0-0.013-0.00719.8270.0300.0300.0000.0000.0000.000
59A87LYS10.9250.97818.2600.2930.2930.0000.0000.0000.000
60A88SER0-0.038-0.01123.5090.0130.0130.0000.0000.0000.000
61A89PHE0-0.029-0.00823.7960.0120.0120.0000.0000.0000.000
62A90THR0-0.002-0.01627.5760.0020.0020.0000.0000.0000.000
63A91LYS10.9500.98230.3230.0790.0790.0000.0000.0000.000
64A92ASN00.0370.00631.603-0.006-0.0060.0000.0000.0000.000
65A93GLU-1-0.766-0.85929.106-0.105-0.1050.0000.0000.0000.000
66A94LYS10.8250.91926.0950.1310.1310.0000.0000.0000.000
67A95LEU00.012-0.00227.448-0.009-0.0090.0000.0000.0000.000
68A96ARG10.8180.90429.3320.1090.1090.0000.0000.0000.000
69A97TYR00.0110.01023.2670.0040.0040.0000.0000.0000.000
70A98LEU0-0.012-0.01724.050-0.009-0.0090.0000.0000.0000.000
71A99LEU00.0050.01826.290-0.005-0.0050.0000.0000.0000.000
72A100ASN0-0.032-0.02126.5870.0080.0080.0000.0000.0000.000
73A101ILE0-0.0050.00422.080-0.004-0.0040.0000.0000.0000.000
74A102LYS11.0041.01124.3870.0950.0950.0000.0000.0000.000
75A103ASN00.008-0.00225.9850.0130.0130.0000.0000.0000.000
76A104LEU00.0180.00819.8110.0050.0050.0000.0000.0000.000
77A105GLU-1-0.919-0.95623.875-0.125-0.1250.0000.0000.0000.000
78A106GLU-1-0.963-0.97926.372-0.090-0.0900.0000.0000.0000.000
79A107VAL0-0.033-0.02121.0690.0100.0100.0000.0000.0000.000
80A108ASN00.0190.01624.428-0.001-0.0010.0000.0000.0000.000
81A109ARG10.8890.96426.2570.1080.1080.0000.0000.0000.000
82A110THR0-0.122-0.07124.4010.0070.0070.0000.0000.0000.000
83A111ARG10.9620.97224.3090.0650.0650.0000.0000.0000.000
84A112TYR0-0.071-0.05019.6340.0060.0060.0000.0000.0000.000
85A113THR0-0.026-0.01018.6450.0010.0010.0000.0000.0000.000
86A114PHE00.0410.01416.641-0.014-0.0140.0000.0000.0000.000
87A115VAL00.0220.01913.6380.0340.0340.0000.0000.0000.000
88A116LEU00.0090.01716.020-0.027-0.0270.0000.0000.0000.000
89A117ALA00.0560.00313.7010.0280.0280.0000.0000.0000.000
90A118PRO00.008-0.00214.002-0.018-0.0180.0000.0000.0000.000
91A119ASP-1-0.890-0.9379.010-1.095-1.0950.0000.0000.0000.000
92A120GLU-1-0.839-0.89510.389-0.912-0.9120.0000.0000.0000.000
93A121LEU0-0.068-0.01212.7580.0870.0870.0000.0000.0000.000
94A122PHE00.0260.00611.140-0.008-0.0080.0000.0000.0000.000
95A123PHE0-0.012-0.01517.0820.0270.0270.0000.0000.0000.000
96A124THR00.0760.04520.5710.0000.0000.0000.0000.0000.000
97A125ARG10.9530.97322.7570.1230.1230.0000.0000.0000.000
98A126ASP-1-0.911-0.95325.257-0.094-0.0940.0000.0000.0000.000
99A127GLY0-0.045-0.01324.9100.0060.0060.0000.0000.0000.000
100A128LEU0-0.029-0.01425.034-0.001-0.0010.0000.0000.0000.000
101A129PRO0-0.0280.00521.288-0.011-0.0110.0000.0000.0000.000
102A130ILE0-0.026-0.00517.3100.0190.0190.0000.0000.0000.000
103A131ALA00.0270.01216.127-0.038-0.0380.0000.0000.0000.000
104A132LYS10.8990.9526.9811.7081.7080.0000.0000.0000.000
105A133THR0-0.090-0.06810.3020.0550.0550.0000.0000.0000.000
106A134ARG10.8540.91712.2560.2390.2390.0000.0000.0000.000
107A135GLY00.0050.01815.1150.0070.0070.0000.0000.0000.000
108A136LEU0-0.069-0.04417.2990.0090.0090.0000.0000.0000.000
109A137GLN00.0760.03020.7440.0090.0090.0000.0000.0000.000
110A138ASN0-0.108-0.06023.6700.0080.0080.0000.0000.0000.000
111A139VAL0-0.086-0.04820.8060.0110.0110.0000.0000.0000.000
112A140VAL00.0280.01715.9660.0120.0120.0000.0000.0000.000
113A141ASP-1-0.848-0.89715.817-0.122-0.1220.0000.0000.0000.000
114A142PRO0-0.010-0.02813.911-0.003-0.0030.0000.0000.0000.000
115A143LEU00.0230.02916.4500.0170.0170.0000.0000.0000.000
116A144PRO0-0.0100.01119.501-0.021-0.0210.0000.0000.0000.000
117A145VAL00.0420.01719.9470.0090.0090.0000.0000.0000.000
118A146SER0-0.014-0.01122.7400.0050.0050.0000.0000.0000.000
119A147GLU-1-0.851-0.92525.638-0.100-0.1000.0000.0000.0000.000
120A148ALA0-0.024-0.02027.709-0.006-0.0060.0000.0000.0000.000
121A149GLU-1-0.843-0.93820.688-0.204-0.2040.0000.0000.0000.000
122A150PHE00.0380.01622.655-0.020-0.0200.0000.0000.0000.000
123A151LEU0-0.010-0.00224.157-0.010-0.0100.0000.0000.0000.000
124A152THR00.0040.00023.3950.0020.0020.0000.0000.0000.000
125A153ARG10.8860.94716.0360.2830.2830.0000.0000.0000.000
126A154TYR0-0.046-0.04221.892-0.011-0.0110.0000.0000.0000.000
127A155LYS10.8260.90023.9570.1080.1080.0000.0000.0000.000
128A156ALA00.0320.02721.3070.0040.0040.0000.0000.0000.000
129A157LEU00.0150.00818.125-0.003-0.0030.0000.0000.0000.000
130A158VAL00.0030.00121.8590.0050.0050.0000.0000.0000.000
131A159ILE0-0.022-0.01424.6830.0070.0070.0000.0000.0000.000
132A160CYS0-0.046-0.02220.4420.0000.0000.0000.0000.0000.000
133A161ALA0-0.0040.00522.5020.0020.0020.0000.0000.0000.000
134A162PHE0-0.041-0.03023.8420.0120.0120.0000.0000.0000.000
135A163ASN0-0.013-0.00325.0790.0120.0120.0000.0000.0000.000
136A164GLU-1-0.918-0.96221.848-0.151-0.1510.0000.0000.0000.000
137A165LYS10.8810.94021.1200.1030.1030.0000.0000.0000.000
138A166GLN0-0.068-0.02021.927-0.001-0.0010.0000.0000.0000.000
139A167SER00.0170.01417.537-0.028-0.0280.0000.0000.0000.000
140A168PHE00.048-0.00315.9210.0190.0190.0000.0000.0000.000
141A169ASP-1-0.823-0.90613.594-0.405-0.4050.0000.0000.0000.000
142A170ALA0-0.038-0.02517.1180.0300.0300.0000.0000.0000.000
143A171LEU0-0.090-0.05120.2530.0190.0190.0000.0000.0000.000
144A172VAL0-0.029-0.02219.1090.0160.0160.0000.0000.0000.000
145A173GLU-1-0.958-0.96716.617-0.215-0.2150.0000.0000.0000.000
146A174GLY0-0.0150.01221.4150.0170.0170.0000.0000.0000.000
147A175ASN0-0.065-0.03724.759-0.001-0.0010.0000.0000.0000.000
148A176LEU00.0710.02225.7490.0040.0040.0000.0000.0000.000
149A177GLU-1-0.871-0.94728.426-0.077-0.0770.0000.0000.0000.000
150A178LEU0-0.116-0.04631.1210.0060.0060.0000.0000.0000.000
151A179HIS0-0.054-0.02426.7810.0010.0010.0000.0000.0000.000
152A180LYS10.8860.94330.0940.0700.0700.0000.0000.0000.000
153A181GLY00.0690.02530.211-0.005-0.0050.0000.0000.0000.000
154A182THR0-0.071-0.02631.2200.0080.0080.0000.0000.0000.000
155A183PRO00.0460.00033.598-0.002-0.0020.0000.0000.0000.000
156A184PHE0-0.006-0.00329.2540.0010.0010.0000.0000.0000.000
157A185GLU-1-0.738-0.86628.139-0.117-0.1170.0000.0000.0000.000
158A186THR00.0190.00731.138-0.002-0.0020.0000.0000.0000.000
159A187LYS10.9610.98233.7530.0710.0710.0000.0000.0000.000
160A188VAL0-0.0220.00728.3120.0000.0000.0000.0000.0000.000
161A189ILE0-0.018-0.02128.758-0.003-0.0030.0000.0000.0000.000
162A190GLU-1-0.876-0.93231.041-0.071-0.0710.0000.0000.0000.000
163A191ALA0-0.072-0.00632.4670.0040.0040.0000.0000.0000.000
164A192ALA00.005-0.00733.258-0.004-0.0040.0000.0000.0000.000
165A193THR00.0300.00433.394-0.001-0.0010.0000.0000.0000.000
166A194LEU00.0700.03928.515-0.002-0.0020.0000.0000.0000.000
167A195ASP-1-0.879-0.93031.753-0.085-0.0850.0000.0000.0000.000
168A196LEU0-0.051-0.03334.8630.0020.0020.0000.0000.0000.000
169A197LEU0-0.019-0.00228.0990.0010.0010.0000.0000.0000.000
170A198THR0-0.013-0.01232.232-0.004-0.0040.0000.0000.0000.000
171A199ALA00.0230.02133.1730.0010.0010.0000.0000.0000.000
172A200PHE00.0160.00632.6500.0020.0020.0000.0000.0000.000
173A201LEU0-0.019-0.02628.9750.0010.0010.0000.0000.0000.000
174A202ASP-1-0.910-0.96933.366-0.085-0.0850.0000.0000.0000.000
175A203GLU-1-0.967-0.97536.090-0.066-0.0660.0000.0000.0000.000
176A204GLN0-0.107-0.04733.9000.0030.0030.0000.0000.0000.000
177A205TYR0-0.107-0.04832.7990.0000.0000.0000.0000.0000.000
178A206NME0-0.0030.00737.5190.0030.0030.0000.0000.0000.000