FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XY82P

Calculation Name: 3FLQ-A-Xray12

Preferred Name: MAP kinase p38 alpha

Target Type: SINGLE PROTEIN

Ligand Name: 6-(2,4-difluorophenoxy)-8-methyl-2-{[(1s)-1-methyl-2-(methylsulfonyl)ethyl]amino}pyrido[2,3-d]pyrimidin-7(8h)-one

ligand 3-letter code: 891

PDB ID: 3FLQ

Chain ID: A

ChEMBL ID: CHEMBL260

UniProt ID: Q16539

Base Structure: X-ray

Registration Date: 2017-08-22

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Homology modeling
Water No
Procedure Auto-FMO protocol ver. 1.20160629
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 347
LigandResidueName 891
LigandFragmentNumber 347
LigandCharge
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -5765469.038151
FMO2-HF: Nuclear repulsion 5624707.287273
FMO2-HF: Total energy -140761.750878
FMO2-MP2: Total energy -141171.333269


3D Structure
Snapshot
 
Ligand structure

891

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-110.620-75.42553.760-29.323-59.636-0.013


Interactive mode: IFIE and PIEDA for fragment #347(A:361:891)


Summations of interaction energy for fragment #347(A:361:891)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-110.62-75.42553.76-29.323-59.6360.013
Interaction energy analysis for fragmet #347(A:361:891)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.012 / q_NPA : 0.001
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1A6PRO10.8520.90315.333-0.143-0.1430.0000.0000.0000.000
2A7THR00.0820.05818.3760.0500.0500.0000.0000.0000.000
3A8PHE00.0190.01613.024-0.051-0.0510.0000.0000.0000.000
4A9TYR0-0.032-0.02514.444-0.009-0.0090.0000.0000.0000.000
5A10ARG10.9510.96515.996-0.403-0.4030.0000.0000.0000.000
6A11GLN00.0470.01714.955-0.077-0.0770.0000.0000.0000.000
7A12GLU-1-0.981-0.97515.3950.6280.6280.0000.0000.0000.000
8A13LEU00.0210.00811.175-0.125-0.1250.0000.0000.0000.000
9A14ASN00.0270.0148.396-0.151-0.1510.0000.0000.0000.000
10A15LYS10.9300.95712.273-0.348-0.3480.0000.0000.0000.000
11A16THR00.0130.01913.1970.0880.0880.0000.0000.0000.000
12A17ILE00.014-0.00414.911-0.080-0.0800.0000.0000.0000.000
13A18TRP0-0.020-0.0186.337-0.028-0.0280.0000.0000.0000.000
14A19GLU-1-0.916-0.97112.9610.3640.3640.0000.0000.0000.000
15A20VAL00.0160.0139.9370.0950.0950.0000.0000.0000.000
16A21PRO0-0.034-0.00711.155-0.090-0.0900.0000.0000.0000.000
17A22GLU-1-0.866-0.95813.618-0.061-0.0610.0000.0000.0000.000
18A23ARG10.7850.89811.9340.2690.2690.0000.0000.0000.000
19A24TYR0-0.043-0.0368.925-0.159-0.1590.0000.0000.0000.000
20A25GLN00.015-0.00212.2050.0960.0960.0000.0000.0000.000
21A26ASN0-0.014-0.02213.127-0.017-0.0170.0000.0000.0000.000
22A27LEU00.0130.02110.115-0.163-0.1630.0000.0000.0000.000
23A28SER0-0.010-0.0078.5310.0530.0530.0000.0000.0000.000
24A29PRO0-0.002-0.0037.9450.1630.1630.0000.0000.0000.000
25A30VAL00.0030.0023.175-1.728-0.6320.053-0.198-0.9500.000
26A31GLY00.0040.0064.075-2.034-1.7990.001-0.037-0.1990.000
27A32SER0-0.017-0.0284.9661.4001.481-0.001-0.002-0.0780.000
28A33GLY0-0.027-0.0085.568-0.160-0.1600.0000.0000.0000.000
29A34ALA00.0690.0487.487-0.606-0.6060.0000.0000.0000.000
30A35TYR00.0290.0074.308-1.263-1.156-0.001-0.020-0.0860.000
31A36GLY00.0140.0387.577-1.064-1.0640.0000.0000.0000.000
32A37SER0-0.0270.0155.9631.9441.9440.0000.0000.0000.000
33A38VAL00.015-0.0082.284-5.265-1.9734.657-2.251-5.6980.026
34A39CYS0-0.053-0.0135.142-2.508-2.5080.0000.0000.0000.000
35A40ALA00.0270.0245.1380.2780.2780.0000.0000.0000.000
36A41ALA00.0180.0047.0410.1840.1840.0000.0000.0000.000
37A42PHE0-0.016-0.0029.649-0.313-0.3130.0000.0000.0000.000
38A43ASP-1-0.699-0.81810.239-0.351-0.3510.0000.0000.0000.000
39A44THR0-0.048-0.03512.217-0.008-0.0080.0000.0000.0000.000
40A45LYS10.9120.95514.6330.2150.2150.0000.0000.0000.000
41A46THR0-0.001-0.01712.058-0.016-0.0160.0000.0000.0000.000
42A47GLY0-0.0170.00414.959-0.002-0.0020.0000.0000.0000.000
43A48LEU00.0020.0139.658-0.148-0.1480.0000.0000.0000.000
44A49ARG10.9480.9737.6622.8102.8100.0000.0000.0000.000
45A50VAL00.006-0.0065.989-0.104-0.1040.0000.0000.0000.000
46A51ALA0-0.016-0.0102.746-2.0500.0271.987-1.336-2.7280.008
47A52VAL00.0060.0002.953-5.162-2.9230.242-0.999-1.481-0.007
48A53LYS10.8180.8812.384-16.698-11.0142.582-2.642-5.6240.022
49A54LYS10.8920.9643.955-3.985-3.6490.010-0.091-0.2540.000
50A55LEU0-0.011-0.0076.8980.8480.8480.0000.0000.0000.000
51A56SER0-0.031-0.0519.400-0.539-0.5390.0000.0000.0000.000
52A57ARG10.9270.95112.197-1.664-1.6640.0000.0000.0000.000
53A58PRO00.0540.04512.2970.0000.0000.0000.0000.0000.000
54A59PHE00.0540.00814.022-0.083-0.0830.0000.0000.0000.000
55A60GLN0-0.022-0.00116.836-0.257-0.2570.0000.0000.0000.000
56A61SER00.0470.01919.101-0.059-0.0590.0000.0000.0000.000
57A62ILE00.0890.04319.2340.0840.0840.0000.0000.0000.000
58A63ILE0-0.0030.00217.1910.0380.0380.0000.0000.0000.000
59A64HIS0-0.053-0.03614.6120.2090.2090.0000.0000.0000.000
60A65ALA00.0560.03614.4670.1510.1510.0000.0000.0000.000
61A66LYS10.8410.92314.995-0.747-0.7470.0000.0000.0000.000
62A67ARG10.8630.9458.536-3.727-3.7270.0000.0000.0000.000
63A68THR0-0.016-0.01210.3570.2220.2220.0000.0000.0000.000
64A69TYR00.0260.02710.049-0.057-0.0570.0000.0000.0000.000
65A70ARG10.7950.86111.039-1.228-1.2280.0000.0000.0000.000
66A71GLU-1-0.828-0.8884.4014.3094.5800.001-0.023-0.2490.000
67A72LEU0-0.0110.0046.636-0.426-0.4260.0000.0000.0000.000
68A73ARG10.8620.9118.049-0.691-0.6910.0000.0000.0000.000
69A74LEU0-0.014-0.0097.947-0.074-0.0740.0000.0000.0000.000
70A75LEU0-0.004-0.0112.432-1.919-0.7301.152-0.595-1.746-0.001
71A76LYS10.7900.8766.023-0.389-0.3890.0000.0000.0000.000
72A77HIS0-0.058-0.0249.031-0.029-0.0290.0000.0000.0000.000
73A78MET0-0.077-0.0177.8510.0710.0710.0000.0000.0000.000
74A79LYS10.9390.9659.702-0.121-0.1210.0000.0000.0000.000
75A80HIS00.0940.04911.6130.0580.0580.0000.0000.0000.000
76A81GLU-1-0.835-0.90811.933-0.165-0.1650.0000.0000.0000.000
77A82ASN00.0010.00012.140-0.060-0.0600.0000.0000.0000.000
78A83VAL0-0.026-0.0068.3860.3190.3190.0000.0000.0000.000
79A84ILE0-0.056-0.0122.712-1.334-0.9272.289-0.518-2.1770.001
80A85GLY00.0680.0366.3910.0400.0400.0000.0000.0000.000
81A86LEU0-0.071-0.0262.712-1.627-0.5580.414-0.425-1.0580.004
82A87LEU0-0.003-0.0084.870-0.132-0.049-0.001-0.004-0.0780.000
83A88ASP-1-0.833-0.9145.4680.0800.0800.0000.0000.0000.000
84A89VAL0-0.022-0.0015.2120.1800.267-0.001-0.003-0.0840.000
85A90PHE0-0.0160.0027.332-0.084-0.0840.0000.0000.0000.000
86A91THR00.009-0.01710.2330.1900.1900.0000.0000.0000.000
87A92PRO00.0030.00213.005-0.098-0.0980.0000.0000.0000.000
88A93ALA0-0.0390.00215.750-0.076-0.0760.0000.0000.0000.000
89A94ARG10.9590.96618.058-0.306-0.3060.0000.0000.0000.000
90A95SER00.0260.01520.840-0.025-0.0250.0000.0000.0000.000
91A96LEU00.0670.03419.7340.0540.0540.0000.0000.0000.000
92A97GLU-1-0.930-0.98421.1130.4430.4430.0000.0000.0000.000
93A98GLU-1-0.967-0.97321.4000.4680.4680.0000.0000.0000.000
94A99PHE0-0.133-0.04313.2470.0760.0760.0000.0000.0000.000
95A100ASN00.009-0.02116.9210.0430.0430.0000.0000.0000.000
96A101ASP-1-0.938-0.95612.6471.5251.5250.0000.0000.0000.000
97A102VAL00.018-0.0077.967-0.202-0.2020.0000.0000.0000.000
98A103TYR00.0120.0066.8470.6350.6350.0000.0000.0000.000
99A104LEU00.0080.0032.536-2.634-0.5501.282-1.136-2.2300.010
100A105VAL00.0050.0112.519-5.379-3.1691.634-1.367-2.478-0.014
101A106THR00.0040.0012.304-4.112-0.2655.076-2.263-6.6610.003
102A107HIS00.1050.0354.193-0.5590.0850.005-0.063-0.5860.000
103A108LEU0-0.078-0.0352.604-8.568-3.3441.789-2.398-4.616-0.003
104A109MET00.0300.0091.957-11.724-14.92117.151-5.322-8.6320.034
105A110GLY00.0190.0131.859-26.401-27.26311.969-5.342-5.765-0.078
106A111ALA0-0.018-0.0093.139-7.414-5.6410.282-0.839-1.216-0.006
107A112ASP-1-0.787-0.8822.5442.0533.9030.981-0.759-2.0720.008
108A113LEU00.0440.0033.914-3.224-3.0120.019-0.077-0.1550.001
109A114ASN0-0.026-0.0186.925-0.584-0.5840.0000.0000.0000.000
110A115ASN0-0.105-0.0555.049-1.491-1.353-0.0010.000-0.1370.000
111A116ILE00.0220.0198.203-0.270-0.2700.0000.0000.0000.000
112A117VAL00.0120.01710.350-0.118-0.1180.0000.0000.0000.000
113A118LYS10.9450.97912.0130.8860.8860.0000.0000.0000.000
114A119CYS0-0.088-0.04713.707-0.012-0.0120.0000.0000.0000.000
115A120GLN0-0.058-0.01816.349-0.013-0.0130.0000.0000.0000.000
116A121LYS10.9390.97017.3090.1180.1180.0000.0000.0000.000
117A122LEU00.0230.02813.780-0.054-0.0540.0000.0000.0000.000
118A123THR0-0.006-0.00918.4300.0400.0400.0000.0000.0000.000
119A124ASP-1-0.761-0.89020.0710.0370.0370.0000.0000.0000.000
120A125ASP-1-0.832-0.91421.387-0.086-0.0860.0000.0000.0000.000
121A126HIS00.0520.02515.5210.0400.0400.0000.0000.0000.000
122A127VAL0-0.044-0.02316.7600.0770.0770.0000.0000.0000.000
123A128GLN0-0.0090.00617.9410.0650.0650.0000.0000.0000.000
124A129PHE00.0670.04015.3940.0810.0810.0000.0000.0000.000
125A130LEU0-0.007-0.00911.4450.0820.0820.0000.0000.0000.000
126A131ILE0-0.018-0.02614.6060.1250.1250.0000.0000.0000.000
127A132TYR0-0.0080.00416.7100.0500.0500.0000.0000.0000.000
128A133GLN00.0210.00913.8030.0310.0310.0000.0000.0000.000
129A134ILE0-0.043-0.01212.3690.0490.0490.0000.0000.0000.000
130A135LEU0-0.001-0.01414.8130.0010.0010.0000.0000.0000.000
131A136ARG10.8160.91217.628-0.068-0.0680.0000.0000.0000.000
132A137GLY00.0170.00314.625-0.036-0.0360.0000.0000.0000.000
133A138LEU0-0.032-0.03214.551-0.014-0.0140.0000.0000.0000.000
134A139LYS10.8570.92716.636-0.171-0.1710.0000.0000.0000.000
135A140TYR00.0390.03212.427-0.026-0.0260.0000.0000.0000.000
136A141ILE00.0150.01011.196-0.001-0.0010.0000.0000.0000.000
137A142HIS0-0.105-0.09014.919-0.037-0.0370.0000.0000.0000.000
138A143SER0-0.066-0.01718.079-0.021-0.0210.0000.0000.0000.000
139A144ALA00.0010.00215.758-0.019-0.0190.0000.0000.0000.000
140A145ASP-1-0.935-0.95817.6640.3500.3500.0000.0000.0000.000
141A146ILE0-0.085-0.02912.0540.0550.0550.0000.0000.0000.000
142A147ILE0-0.030-0.03615.263-0.013-0.0130.0000.0000.0000.000
143A148HIS0-0.032-0.0198.725-0.118-0.1180.0000.0000.0000.000
144A149ARG10.8460.90912.683-0.705-0.7050.0000.0000.0000.000
145A150ASP-1-0.897-0.96211.3821.7341.7340.0000.0000.0000.000
146A151LEU00.0420.03211.6600.1980.1980.0000.0000.0000.000
147A152LYS10.9320.9608.812-1.801-1.8010.0000.0000.0000.000
148A153PRO00.0710.0289.1820.4090.4090.0000.0000.0000.000
149A154SER0-0.019-0.0155.4870.6800.6800.0000.0000.0000.000
150A155ASN0-0.099-0.0354.3790.5790.690-0.001-0.015-0.0950.000
151A156LEU0-0.023-0.0056.343-0.278-0.2780.0000.0000.0000.000
152A157ALA00.0230.0183.249-0.2690.8510.108-0.302-0.9260.003
153A158VAL0-0.035-0.0044.787-2.021-1.915-0.001-0.011-0.0950.000
154A159ASN0-0.033-0.0016.436-0.817-0.8170.0000.0000.0000.000
155A160GLU-1-0.906-0.9768.550-2.172-2.1720.0000.0000.0000.000
156A161ASP-1-0.933-0.94711.354-0.700-0.7000.0000.0000.0000.000
157A162CYS0-0.082-0.06311.6400.1720.1720.0000.0000.0000.000
158A163GLU-1-0.854-0.92311.978-0.192-0.1920.0000.0000.0000.000
159A164LEU0-0.061-0.0289.1860.1440.1440.0000.0000.0000.000
160A165LYS10.8580.9117.117-0.256-0.2560.0000.0000.0000.000
161A166ILE0-0.019-0.0127.9441.0141.0140.0000.0000.0000.000
162A167LEU0-0.009-0.0173.254-1.889-0.7090.086-0.261-1.0050.002
163A168ASP-1-0.919-0.9514.2744.8225.039-0.001-0.010-0.2060.000
164A169PHE00.0680.0254.657-0.151-0.039-0.001-0.006-0.1060.000
165A170GLY00.022-0.0025.8290.1130.1130.0000.0000.0000.000
166A171LEU0-0.0050.0014.5130.1000.273-0.001-0.008-0.1650.000
167A172ALA0-0.083-0.0648.413-0.499-0.4990.0000.0000.0000.000
168A173ARG10.9290.97511.259-1.612-1.6120.0000.0000.0000.000
169A174HIS0-0.0020.00811.1190.0020.0020.0000.0000.0000.000
170A175THR0-0.028-0.00714.769-0.201-0.2010.0000.0000.0000.000
171A176ASP-1-0.878-0.95517.7960.6920.6920.0000.0000.0000.000
172A177ASP-1-0.945-0.95819.5500.5860.5860.0000.0000.0000.000
173A178GLU-1-0.829-0.90414.1791.5721.5720.0000.0000.0000.000
174A179MET0-0.0350.02316.4510.0120.0120.0000.0000.0000.000
175A180THR0-0.042-0.02518.817-0.094-0.0940.0000.0000.0000.000
176A181GLY00.0290.01820.320-0.013-0.0130.0000.0000.0000.000
177A182TYR0-0.012-0.00819.7530.0350.0350.0000.0000.0000.000
178A183VAL00.0050.01215.844-0.057-0.0570.0000.0000.0000.000
179A184ALA00.0650.01412.4420.0450.0450.0000.0000.0000.000
180A185THR0-0.113-0.09912.2170.0570.0570.0000.0000.0000.000
181A186ARG10.8340.89813.972-0.355-0.3550.0000.0000.0000.000
182A187TRP0-0.045-0.00915.693-0.017-0.0170.0000.0000.0000.000
183A188TYR0-0.050-0.07513.572-0.018-0.0180.0000.0000.0000.000
184A189ARG10.9290.99016.559-0.879-0.8790.0000.0000.0000.000
185A190ALA00.0560.02418.959-0.061-0.0610.0000.0000.0000.000
186A191PRO00.0160.00122.2890.0240.0240.0000.0000.0000.000
187A192GLU-1-0.770-0.89524.6010.4330.4330.0000.0000.0000.000
188A193ILE0-0.0010.00919.0060.0060.0060.0000.0000.0000.000
189A194MET0-0.078-0.01222.1230.0360.0360.0000.0000.0000.000
190A195LEU0-0.023-0.02723.265-0.003-0.0030.0000.0000.0000.000
191A196ASN0-0.043-0.01324.1840.0040.0040.0000.0000.0000.000
192A197TRP0-0.001-0.00626.705-0.027-0.0270.0000.0000.0000.000
193A198MET0-0.008-0.01927.820-0.032-0.0320.0000.0000.0000.000
194A199HIS00.0110.01923.5890.0400.0400.0000.0000.0000.000
195A200TYR00.0250.02019.1690.0020.0020.0000.0000.0000.000
196A201ASN00.0780.05123.0010.0290.0290.0000.0000.0000.000
197A202GLN00.1090.02219.9640.0350.0350.0000.0000.0000.000
198A203THR0-0.024-0.01820.2760.0300.0300.0000.0000.0000.000
199A204VAL0-0.027-0.01218.592-0.004-0.0040.0000.0000.0000.000
200A205ASP-1-0.698-0.83316.2560.7900.7900.0000.0000.0000.000
201A206ILE0-0.019-0.00218.4950.0260.0260.0000.0000.0000.000
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